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Hi, I would like to know about the acquisitions of the cerebellum and subcortical areas.
I ask if you, Freesurfer developers, could recommend any software script that allows me to extract the cerebellum in a high enough quality? Does Freesurfer offers the best known (by you) tool to do so or does somewhere else has a more specialized script for this purpose?
Also, just to confirm, does the current recon-all_clinical register all the subcortical areas? Or do I need to perform an specific command to properly get them?
I want to connect all the intracranial neuro matter (Cortex + Subcortical area + cerebellum) in a single volume, for this purpose I pretend to place the structures in the exact coordinates they're supposed to be, according to each other positions. If there's any suggestion on how I could do it accuratelly, I ask for your assistance.
One last thing, could you inform me of the existence of programs that allows me to analyse my brain data, and through that get outputs showing me possible indications? (I won't use these for clinical purposes, these won't I search for that and