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cotrolling for total gray matter volume
by Clara Kühn 02 Jul '16

02 Jul '16

Dear FreeSurfer experts, I would like to look at longitudinal thickness data and want to control for total gray matter volume. Should I use that information from the CROSS before anything has been registered and smoothed or from the LONG after they have been registered to the BASE? Also I was wondering if it is useful to control for total gray matter volume when looking at surface area? Thanks for your help! Clara -- Clara Kühn, Phd Student Max-Planck-Institute for Human Cognitive and Brain Science Department of Neuropsychology Stephanstrasse 1A 04103 Leipzig, Germany Phone: +49 341 - 9940 2271 Fax: +49 341 - 9940 2260 Web: www.cbs.mpg.de E-Mail: ckuehn(a)cbs.mpg.de

2 1

Fwd: Question about FreeSurfer
by Dorsa Haji Ghaffari 01 Jul '16

01 Jul '16

Hi, I ran the recon-all autorecon1 on my data and then ran this command to segment the subcortical structures :recon-all -subcortseg -subjid test1 but I got errors. I have copied the log here, I appreciate any suggestions: Thu Jun 30 16:28:08 EDT 2016 /usr/local/freesurfer/subjects/test1 /usr/local/freesurfer/bin/recon-all -i LT7616_3TS_0001.dcm -autorecon1 -subjid test1 subjid test1 setenv SUBJECTS_DIR /usr/local/freesurfer/subjects FREESURFER_HOME /usr/local/freesurfer Actual FREESURFER_HOME /usr/local/freesurfer build-stamp.txt: freesurfer-Linux-centos4-stable-pub-v5.3.0 Linux xubuntu-VirtualBox 3.2.0-23-generic #36-Ubuntu SMP Tue Apr 10 20:41:14 UTC 2012 i686 i686 i386 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 5875 maxlocks unlimited maxsignal 5875 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buffers cached Mem: 766528 704348 62180 0 65052 395736 -/+ buffers/cache: 243560 522968 Swap: 1944572 172 1944400 ######################################## program versions used $Id: recon-all,v 1.379.2.73 2013/05/12 23:15:37 nicks Exp $ $Id: mri_motion_correct.fsl,v 1.14 2011/03/02 20:16:39 nicks Exp $ mri_convert -all-info ProgramName: mri_convert ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/06/30-20:28:08-GMT BuildTimeStamp: May 13 2013 18:53:32 CVS: $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $ User: fsuser Machine: xubuntu-VirtualBox Platform: Linux PlatformVersion: 3.2.0-23-generic CompilerName: GCC CompilerVersion: 30400 FLIRT version 5.5 $Id: talairach_avi,v 1.9 2011/03/02 18:38:06 nicks Exp $ mri_convert --version stable5 ProgramName: tkregister2_cmdl ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/06/30-20:28:08-GMT BuildTimeStamp: May 13 2013 18:53:32 CVS: $Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $ User: fsuser Machine: xubuntu-VirtualBox Platform: Linux PlatformVersion: 3.2.0-23-generic CompilerName: GCC CompilerVersion: 30400 Program nu_correct, built from: Package MNI N3, version 1.10, compiled by nicks@fishie (i686-pc-linux-gnu) on 2010-02-20 at 20:19:13 ProgramName: mri_make_uchar ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/06/30-20:28:08-GMT BuildTimeStamp: May 13 2013 18:53:32 CVS: $Id: mri_make_uchar.c,v 1.4 2011/03/02 00:04:14 nicks Exp $ User: fsuser Machine: xubuntu-VirtualBox Platform: Linux PlatformVersion: 3.2.0-23-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: mri_normalize ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/06/30-20:28:08-GMT BuildTimeStamp: May 13 2013 18:53:32 CVS: $Id: mri_normalize.c,v 1.73.2.1 2012/10/17 19:11:32 nicks Exp $ User: fsuser Machine: xubuntu-VirtualBox Platform: Linux PlatformVersion: 3.2.0-23-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: mri_watershed ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/06/30-20:28:08-GMT BuildTimeStamp: May 13 2013 18:53:32 CVS: $Id: mri_watershed.cpp,v 1.96.2.1 2011/11/08 22:18:44 nicks Exp $ User: fsuser Machine: xubuntu-VirtualBox Platform: Linux PlatformVersion: 3.2.0-23-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: mri_gcut ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/06/30-20:28:08-GMT BuildTimeStamp: May 13 2013 18:53:32 CVS: $Id: mri_gcut.cpp,v 1.14 2011/03/02 00:04:16 nicks Exp $ User: fsuser Machine: xubuntu-VirtualBox Platform: Linux PlatformVersion: 3.2.0-23-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: mri_segment ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/06/30-20:28:08-GMT BuildTimeStamp: May 13 2013 18:53:32 CVS: $Id: mri_segment.c,v 1.40 2011/03/02 00:04:24 nicks Exp $ User: fsuser Machine: xubuntu-VirtualBox Platform: Linux PlatformVersion: 3.2.0-23-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: mri_label2label ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/06/30-20:28:08-GMT BuildTimeStamp: May 13 2013 18:53:32 CVS: $Id: mri_label2label.c,v 1.40.2.2 2013/04/02 16:26:15 greve Exp $ User: fsuser Machine: xubuntu-VirtualBox Platform: Linux PlatformVersion: 3.2.0-23-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: mri_em_register ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/06/30-20:28:08-GMT BuildTimeStamp: May 13 2013 18:53:32 CVS: $Id: mri_em_register.c,v 1.84.2.3 2013/02/09 00:49:26 nicks Exp $ User: fsuser Machine: xubuntu-VirtualBox Platform: Linux PlatformVersion: 3.2.0-23-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: mri_ca_normalize ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/06/30-20:28:08-GMT BuildTimeStamp: May 13 2013 18:53:32 CVS: $Id: mri_ca_normalize.c,v 1.52.2.2 2012/10/17 19:11:32 nicks Exp $ User: fsuser Machine: xubuntu-VirtualBox Platform: Linux PlatformVersion: 3.2.0-23-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: mri_ca_register ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/06/30-20:28:08-GMT BuildTimeStamp: May 13 2013 18:53:32 CVS: $Id: mri_ca_register.c,v 1.78.2.3 2013/02/09 00:42:20 nicks Exp $ User: fsuser Machine: xubuntu-VirtualBox Platform: Linux PlatformVersion: 3.2.0-23-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: mri_ca_label ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/06/30-20:28:08-GMT BuildTimeStamp: May 13 2013 18:53:32 CVS: $Id: mri_ca_label.c,v 1.96.2.1 2012/08/28 22:11:20 nicks Exp $ User: fsuser Machine: xubuntu-VirtualBox Platform: Linux PlatformVersion: 3.2.0-23-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: mri_pretess ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/06/30-20:28:08-GMT BuildTimeStamp: May 13 2013 18:53:32 CVS: $Id: mri_pretess.c,v 1.20 2011/03/02 00:04:23 nicks Exp $ User: fsuser Machine: xubuntu-VirtualBox Platform: Linux PlatformVersion: 3.2.0-23-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: mri_fill ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/06/30-20:28:08-GMT BuildTimeStamp: May 13 2013 18:53:32 CVS: $Id: mri_fill.c,v 1.118 2011/03/16 21:23:49 nicks Exp $ User: fsuser Machine: xubuntu-VirtualBox Platform: Linux PlatformVersion: 3.2.0-23-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: mri_tessellate ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/06/30-20:28:08-GMT BuildTimeStamp: May 13 2013 18:53:32 CVS: $Id: mri_tessellate.c,v 1.36 2011/03/02 00:04:25 nicks Exp $ User: fsuser Machine: xubuntu-VirtualBox Platform: Linux PlatformVersion: 3.2.0-23-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: mri_concatenate_lta ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/06/30-20:28:08-GMT BuildTimeStamp: May 13 2013 18:53:32 CVS: $Id: mri_concatenate_lta.c,v 1.10 2011/03/16 21:23:48 nicks Exp $ User: fsuser Machine: xubuntu-VirtualBox Platform: Linux PlatformVersion: 3.2.0-23-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: mri_normalize_tp2 ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/06/30-20:28:08-GMT BuildTimeStamp: May 13 2013 18:53:32 CVS: $Id: mri_normalize_tp2.c,v 1.8 2011/03/02 00:04:23 nicks Exp $ User: fsuser Machine: xubuntu-VirtualBox Platform: Linux PlatformVersion: 3.2.0-23-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: mris_smooth ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/06/30-20:28:09-GMT BuildTimeStamp: May 13 2013 18:53:32 CVS: $Id: mris_smooth.c,v 1.28 2011/03/02 00:04:34 nicks Exp $ User: fsuser Machine: xubuntu-VirtualBox Platform: Linux PlatformVersion: 3.2.0-23-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: mris_inflate ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/06/30-20:28:09-GMT BuildTimeStamp: May 13 2013 18:53:32 CVS: $Id: mris_inflate.c,v 1.43 2011/03/02 00:04:32 nicks Exp $ User: fsuser Machine: xubuntu-VirtualBox Platform: Linux PlatformVersion: 3.2.0-23-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: mris_curvature ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/06/30-20:28:09-GMT BuildTimeStamp: May 13 2013 18:53:32 CVS: $Id: mris_curvature.c,v 1.31 2011/03/02 00:04:30 nicks Exp $ User: fsuser Machine: xubuntu-VirtualBox Platform: Linux PlatformVersion: 3.2.0-23-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: mris_sphere ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/06/30-20:28:09-GMT BuildTimeStamp: May 13 2013 18:53:32 CVS: $Id: mris_sphere.c,v 1.57 2011/03/02 00:04:34 nicks Exp $ User: fsuser Machine: xubuntu-VirtualBox Platform: Linux PlatformVersion: 3.2.0-23-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: mris_fix_topology ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/06/30-20:28:09-GMT BuildTimeStamp: May 13 2013 18:53:32 CVS: $Id: mris_fix_topology.c,v 1.48 2011/03/02 00:04:32 nicks Exp $ User: fsuser Machine: xubuntu-VirtualBox Platform: Linux PlatformVersion: 3.2.0-23-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: mris_topo_fixer ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/06/30-20:28:09-GMT BuildTimeStamp: May 13 2013 18:53:32 CVS: $Id: mris_topo_fixer.cpp,v 1.29 2011/03/02 00:04:34 nicks Exp $ User: fsuser Machine: xubuntu-VirtualBox Platform: Linux PlatformVersion: 3.2.0-23-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: mris_ca_label ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/06/30-20:28:09-GMT BuildTimeStamp: May 13 2013 18:53:32 CVS: $Id: mris_ca_label.c,v 1.35 2011/03/02 00:04:27 nicks Exp $ User: fsuser Machine: xubuntu-VirtualBox Platform: Linux PlatformVersion: 3.2.0-23-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: mris_euler_number ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/06/30-20:28:09-GMT BuildTimeStamp: May 13 2013 18:53:32 CVS: $Id: mris_euler_number.c,v 1.8.2.2 2013/01/14 22:40:07 greve Exp $ User: fsuser Machine: xubuntu-VirtualBox Platform: Linux PlatformVersion: 3.2.0-23-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: mris_make_surfaces ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/06/30-20:28:09-GMT BuildTimeStamp: May 13 2013 18:53:32 CVS: $Id: mris_make_surfaces.c,v 1.127.2.6 2013/05/12 22:28:01 nicks Exp $ User: fsuser Machine: xubuntu-VirtualBox Platform: Linux PlatformVersion: 3.2.0-23-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: mris_register ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/06/30-20:28:09-GMT BuildTimeStamp: May 13 2013 18:53:32 CVS: $Id: mris_register.c,v 1.59 2011/03/02 00:04:33 nicks Exp $ User: fsuser Machine: xubuntu-VirtualBox Platform: Linux PlatformVersion: 3.2.0-23-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: mris_volmask ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/06/30-20:28:09-GMT BuildTimeStamp: May 13 2013 18:53:32 CVS: $Id: mris_volmask.cpp,v 1.25 2011/03/02 00:04:34 nicks Exp $ User: fsuser Machine: xubuntu-VirtualBox Platform: Linux PlatformVersion: 3.2.0-23-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: mris_anatomical_stats ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/06/30-20:28:09-GMT BuildTimeStamp: May 13 2013 18:53:32 CVS: $Id: mris_anatomical_stats.c,v 1.72 2011/03/02 00:04:26 nicks Exp $ User: fsuser Machine: xubuntu-VirtualBox Platform: Linux PlatformVersion: 3.2.0-23-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: mrisp_paint ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/06/30-20:28:09-GMT BuildTimeStamp: May 13 2013 18:53:32 CVS: $Id: mrisp_paint.c,v 1.11 2011/03/02 00:04:35 nicks Exp $ User: fsuser Machine: xubuntu-VirtualBox Platform: Linux PlatformVersion: 3.2.0-23-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: mris_curvature_stats ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/06/30-20:28:09-GMT BuildTimeStamp: May 13 2013 18:53:32 CVS: $Id: mris_curvature_stats.c,v 1.64 2011/03/02 00:04:30 nicks Exp $ User: fsuser Machine: xubuntu-VirtualBox Platform: Linux PlatformVersion: 3.2.0-23-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: mris_calc ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/06/30-20:28:09-GMT BuildTimeStamp: May 13 2013 18:53:32 CVS: $Id: mris_calc.c,v 1.37.2.8 2013/01/28 17:05:17 greve Exp $ User: fsuser Machine: xubuntu-VirtualBox Platform: Linux PlatformVersion: 3.2.0-23-generic CompilerName: GCC CompilerVersion: 30400 $Id: mri_robust_register.cpp,v 1.52.2.3 2012/11/20 17:26:47 mreuter Exp $ ProgramName: mri_robust_register ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/06/30-20:28:09-GMT BuildTimeStamp: May 13 2013 18:53:32 CVS: $Id: mri_robust_register.cpp,v 1.52.2.3 2012/11/20 17:26:47 mreuter Exp $ User: fsuser Machine: xubuntu-VirtualBox Platform: Linux PlatformVersion: 3.2.0-23-generic CompilerName: GCC CompilerVersion: 30400 $Id: mri_robust_template.cpp,v 1.37.2.2 2012/10/10 19:59:06 mreuter Exp $ ProgramName: mri_robust_template ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/06/30-20:28:09-GMT BuildTimeStamp: May 13 2013 18:53:32 CVS: $Id: mri_robust_template.cpp,v 1.37.2.2 2012/10/10 19:59:06 mreuter Exp $ User: fsuser Machine: xubuntu-VirtualBox Platform: Linux PlatformVersion: 3.2.0-23-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: mri_and ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/06/30-20:28:09-GMT BuildTimeStamp: May 13 2013 18:53:32 CVS: $Id: mri_and.c,v 1.4 2011/03/02 00:04:13 nicks Exp $ User: fsuser Machine: xubuntu-VirtualBox Platform: Linux PlatformVersion: 3.2.0-23-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: mri_or ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/06/30-20:28:09-GMT BuildTimeStamp: May 13 2013 18:53:32 CVS: $Id: mri_or.c,v 1.3 2011/03/02 00:04:13 nicks Exp $ User: fsuser Machine: xubuntu-VirtualBox Platform: Linux PlatformVersion: 3.2.0-23-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: mri_fuse_segmentations ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/06/30-20:28:09-GMT BuildTimeStamp: May 13 2013 18:53:32 CVS: $Id: mri_fuse_segmentations.c,v 1.8 2011/03/02 00:04:15 nicks Exp $ User: fsuser Machine: xubuntu-VirtualBox Platform: Linux PlatformVersion: 3.2.0-23-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: mri_segstats ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/06/30-20:28:09-GMT BuildTimeStamp: May 13 2013 18:53:32 CVS: $Id: mri_segstats.c,v 1.75.2.9 2013/02/16 00:09:33 greve Exp $ User: fsuser Machine: xubuntu-VirtualBox Platform: Linux PlatformVersion: 3.2.0-23-generic CompilerName: GCC CompilerVersion: 30400 ####################################### GCADIR /usr/local/freesurfer/average GCA RB_all_2008-03-26.gca GCASkull RB_all_withskull_2008-03-26.gca AvgCurvTif average.curvature.filled.buckner40.tif GCSDIR /usr/local/freesurfer/average GCS curvature.buckner40.filled.desikan_killiany.2010-03-25.gcs ####################################### /usr/local/freesurfer/subjects/test1 mri_convert /home/fsuser/LT7616_3TS_0001.dcm /usr/local/freesurfer/subjects/test1/mri/orig/001.mgz mri_convert /home/fsuser/LT7616_3TS_0001.dcm /usr/local/freesurfer/subjects/test1/mri/orig/001.mgz $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $ reading from /home/fsuser/LT7616_3TS_0001.dcm... Starting DICOMRead2() dcmfile = /home/fsuser/LT7616_3TS_0001.dcm dcmdir = /home/fsuser WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0001.dcm Ref Series No = 602 Found 246 files, checking for dicoms WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0001.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0002.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0003.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0004.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0005.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0006.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0007.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0008.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0009.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0010.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0011.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0012.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0013.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0014.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0015.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0016.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0017.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0018.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0019.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0020.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0021.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0022.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0023.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0024.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0025.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0026.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0027.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0028.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0029.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0030.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0031.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0032.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0033.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0034.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0035.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0036.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0037.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0038.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0039.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0040.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0041.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0042.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0043.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0044.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0045.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0046.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0047.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0048.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0049.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0050.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0051.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0052.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0053.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0054.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0055.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0056.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0057.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0058.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0059.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0060.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0061.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0062.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0063.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0064.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0065.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0066.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0067.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0068.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0069.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0070.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0071.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0072.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0073.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0074.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0075.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0076.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0077.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0078.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0079.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0080.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0081.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0082.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0083.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0084.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0085.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0086.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0087.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0088.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0089.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0090.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0091.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0092.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0093.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0094.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0095.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0096.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0097.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0098.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0099.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0100.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0101.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0102.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0103.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0104.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0105.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0106.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0107.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0108.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0109.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0110.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0111.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0112.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0113.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0114.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0115.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0116.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0117.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0118.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0119.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0120.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0121.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0122.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0123.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0124.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0125.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0126.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0127.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0128.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0129.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0130.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0131.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0132.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0133.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0134.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0135.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0136.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0137.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0138.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0139.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0140.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0141.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0142.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0143.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0144.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0145.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0146.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0147.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0148.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0149.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0150.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0151.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0152.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0153.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0154.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0155.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0156.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0157.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0158.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0159.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0160.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0161.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0162.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0163.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0164.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0165.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0166.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0167.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0168.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0169.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0170.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0171.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0172.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0173.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0174.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0175.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0176.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0177.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0178.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0179.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0180.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0181.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0182.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0183.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0184.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0185.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0186.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0187.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0188.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0189.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0190.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0191.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0192.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0193.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0194.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0195.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0196.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0197.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0198.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0199.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0200.dcm Found 200 dicom files in series. WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0001.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0002.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0003.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0004.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0005.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0006.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0007.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0008.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0009.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0010.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0011.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0012.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0013.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0014.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0015.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0016.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0017.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0018.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0019.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0020.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0021.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0022.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0023.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0024.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0025.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0026.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0027.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0028.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0029.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0030.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0031.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0032.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0033.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0034.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0035.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0036.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0037.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0038.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0039.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0040.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0041.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0042.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0043.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0044.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0045.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0046.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0047.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0048.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0049.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0050.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0051.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0052.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0053.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0054.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0055.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0056.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0057.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0058.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0059.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0060.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0061.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0062.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0063.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0064.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0065.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0066.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0067.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0068.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0069.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0070.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0071.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0072.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0073.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0074.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0075.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0076.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0077.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0078.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0079.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0080.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0081.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0082.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0083.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0084.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0085.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0086.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0087.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0088.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0089.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0090.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0091.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0092.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0093.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0094.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0095.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0096.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0097.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0098.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0099.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0100.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0101.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0102.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0103.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0104.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0105.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0106.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0107.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0108.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0109.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0110.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0111.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0112.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0113.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0114.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0115.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0116.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0117.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0118.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0119.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0120.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0121.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0122.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0123.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0124.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0125.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0126.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0127.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0128.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0129.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0130.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0131.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0132.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0133.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0134.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0135.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0136.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0137.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0138.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0139.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0140.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0141.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0142.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0143.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0144.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0145.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0146.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0147.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0148.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0149.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0150.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0151.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0152.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0153.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0154.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0155.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0156.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0157.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0158.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0159.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0160.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0161.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0162.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0163.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0164.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0165.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0166.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0167.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0168.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0169.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0170.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0171.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0172.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0173.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0174.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0175.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0176.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0177.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0178.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0179.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0180.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0181.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0182.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0183.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0184.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0185.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0186.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0187.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0188.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0189.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0190.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0191.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0192.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0193.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0194.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0195.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0196.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0197.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0198.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0199.dcm WARNING: tag ImageNumber not found in /home/fsuser/LT7616_3TS_0200.dcm First Sorting WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0002.dcm File2: /home/fsuser/LT7616_3TS_0003.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0001.dcm File2: /home/fsuser/LT7616_3TS_0002.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0005.dcm File2: /home/fsuser/LT7616_3TS_0006.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0004.dcm File2: /home/fsuser/LT7616_3TS_0005.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0001.dcm File2: /home/fsuser/LT7616_3TS_0004.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0002.dcm File2: /home/fsuser/LT7616_3TS_0004.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0003.dcm File2: /home/fsuser/LT7616_3TS_0004.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0008.dcm File2: /home/fsuser/LT7616_3TS_0009.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0007.dcm File2: /home/fsuser/LT7616_3TS_0008.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0011.dcm File2: /home/fsuser/LT7616_3TS_0012.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0010.dcm File2: /home/fsuser/LT7616_3TS_0011.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0007.dcm File2: /home/fsuser/LT7616_3TS_0010.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0008.dcm File2: /home/fsuser/LT7616_3TS_0010.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0009.dcm File2: /home/fsuser/LT7616_3TS_0010.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0001.dcm File2: /home/fsuser/LT7616_3TS_0007.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0002.dcm File2: /home/fsuser/LT7616_3TS_0007.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0003.dcm File2: /home/fsuser/LT7616_3TS_0007.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0004.dcm File2: /home/fsuser/LT7616_3TS_0007.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0005.dcm File2: /home/fsuser/LT7616_3TS_0007.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0006.dcm File2: /home/fsuser/LT7616_3TS_0007.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0014.dcm File2: /home/fsuser/LT7616_3TS_0015.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0013.dcm File2: /home/fsuser/LT7616_3TS_0014.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0017.dcm File2: /home/fsuser/LT7616_3TS_0018.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0016.dcm File2: /home/fsuser/LT7616_3TS_0017.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0013.dcm File2: /home/fsuser/LT7616_3TS_0016.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0014.dcm File2: /home/fsuser/LT7616_3TS_0016.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0015.dcm File2: /home/fsuser/LT7616_3TS_0016.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0020.dcm File2: /home/fsuser/LT7616_3TS_0021.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0019.dcm File2: /home/fsuser/LT7616_3TS_0020.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0022.dcm File2: /home/fsuser/LT7616_3TS_0023.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0024.dcm File2: /home/fsuser/LT7616_3TS_0025.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0022.dcm File2: /home/fsuser/LT7616_3TS_0024.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0023.dcm File2: /home/fsuser/LT7616_3TS_0024.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0019.dcm File2: /home/fsuser/LT7616_3TS_0022.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0020.dcm File2: /home/fsuser/LT7616_3TS_0022.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0021.dcm File2: /home/fsuser/LT7616_3TS_0022.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0013.dcm File2: /home/fsuser/LT7616_3TS_0019.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0014.dcm File2: /home/fsuser/LT7616_3TS_0019.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0015.dcm File2: /home/fsuser/LT7616_3TS_0019.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0016.dcm File2: /home/fsuser/LT7616_3TS_0019.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0017.dcm File2: /home/fsuser/LT7616_3TS_0019.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0018.dcm File2: /home/fsuser/LT7616_3TS_0019.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0001.dcm File2: /home/fsuser/LT7616_3TS_0013.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0002.dcm File2: /home/fsuser/LT7616_3TS_0013.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0003.dcm File2: /home/fsuser/LT7616_3TS_0013.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0004.dcm File2: /home/fsuser/LT7616_3TS_0013.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0005.dcm File2: /home/fsuser/LT7616_3TS_0013.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0006.dcm File2: /home/fsuser/LT7616_3TS_0013.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0007.dcm File2: /home/fsuser/LT7616_3TS_0013.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0008.dcm File2: /home/fsuser/LT7616_3TS_0013.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0009.dcm File2: /home/fsuser/LT7616_3TS_0013.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0010.dcm File2: /home/fsuser/LT7616_3TS_0013.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0011.dcm File2: /home/fsuser/LT7616_3TS_0013.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0012.dcm File2: /home/fsuser/LT7616_3TS_0013.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0027.dcm File2: /home/fsuser/LT7616_3TS_0028.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0026.dcm File2: /home/fsuser/LT7616_3TS_0027.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0030.dcm File2: /home/fsuser/LT7616_3TS_0031.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0029.dcm File2: /home/fsuser/LT7616_3TS_0030.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0026.dcm File2: /home/fsuser/LT7616_3TS_0029.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0027.dcm File2: /home/fsuser/LT7616_3TS_0029.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0028.dcm File2: /home/fsuser/LT7616_3TS_0029.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0033.dcm File2: /home/fsuser/LT7616_3TS_0034.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0032.dcm File2: /home/fsuser/LT7616_3TS_0033.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0036.dcm File2: /home/fsuser/LT7616_3TS_0037.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0035.dcm File2: /home/fsuser/LT7616_3TS_0036.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0032.dcm File2: /home/fsuser/LT7616_3TS_0035.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0033.dcm File2: /home/fsuser/LT7616_3TS_0035.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0034.dcm File2: /home/fsuser/LT7616_3TS_0035.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0026.dcm File2: /home/fsuser/LT7616_3TS_0032.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0027.dcm File2: /home/fsuser/LT7616_3TS_0032.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0028.dcm File2: /home/fsuser/LT7616_3TS_0032.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0029.dcm File2: /home/fsuser/LT7616_3TS_0032.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0030.dcm File2: /home/fsuser/LT7616_3TS_0032.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0031.dcm File2: /home/fsuser/LT7616_3TS_0032.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0039.dcm File2: /home/fsuser/LT7616_3TS_0040.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0038.dcm File2: /home/fsuser/LT7616_3TS_0039.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0042.dcm File2: /home/fsuser/LT7616_3TS_0043.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0041.dcm File2: /home/fsuser/LT7616_3TS_0042.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0038.dcm File2: /home/fsuser/LT7616_3TS_0041.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0039.dcm File2: /home/fsuser/LT7616_3TS_0041.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0040.dcm File2: /home/fsuser/LT7616_3TS_0041.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0045.dcm File2: /home/fsuser/LT7616_3TS_0046.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0044.dcm File2: /home/fsuser/LT7616_3TS_0045.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0047.dcm File2: /home/fsuser/LT7616_3TS_0048.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0049.dcm File2: /home/fsuser/LT7616_3TS_0050.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0047.dcm File2: /home/fsuser/LT7616_3TS_0049.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0048.dcm File2: /home/fsuser/LT7616_3TS_0049.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0044.dcm File2: /home/fsuser/LT7616_3TS_0047.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0045.dcm File2: /home/fsuser/LT7616_3TS_0047.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0046.dcm File2: /home/fsuser/LT7616_3TS_0047.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0038.dcm File2: /home/fsuser/LT7616_3TS_0044.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0039.dcm File2: /home/fsuser/LT7616_3TS_0044.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0040.dcm File2: /home/fsuser/LT7616_3TS_0044.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0041.dcm File2: /home/fsuser/LT7616_3TS_0044.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0042.dcm File2: /home/fsuser/LT7616_3TS_0044.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0043.dcm File2: /home/fsuser/LT7616_3TS_0044.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0026.dcm File2: /home/fsuser/LT7616_3TS_0038.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0027.dcm File2: /home/fsuser/LT7616_3TS_0038.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0028.dcm File2: /home/fsuser/LT7616_3TS_0038.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0029.dcm File2: /home/fsuser/LT7616_3TS_0038.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0030.dcm File2: /home/fsuser/LT7616_3TS_0038.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0031.dcm File2: /home/fsuser/LT7616_3TS_0038.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0032.dcm File2: /home/fsuser/LT7616_3TS_0038.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0033.dcm File2: /home/fsuser/LT7616_3TS_0038.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0034.dcm File2: /home/fsuser/LT7616_3TS_0038.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0035.dcm File2: /home/fsuser/LT7616_3TS_0038.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0036.dcm File2: /home/fsuser/LT7616_3TS_0038.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0037.dcm File2: /home/fsuser/LT7616_3TS_0038.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0001.dcm File2: /home/fsuser/LT7616_3TS_0026.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0002.dcm File2: /home/fsuser/LT7616_3TS_0026.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0003.dcm File2: /home/fsuser/LT7616_3TS_0026.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0004.dcm File2: /home/fsuser/LT7616_3TS_0026.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0005.dcm File2: /home/fsuser/LT7616_3TS_0026.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0006.dcm File2: /home/fsuser/LT7616_3TS_0026.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0007.dcm File2: /home/fsuser/LT7616_3TS_0026.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0008.dcm File2: /home/fsuser/LT7616_3TS_0026.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0009.dcm File2: /home/fsuser/LT7616_3TS_0026.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0010.dcm File2: /home/fsuser/LT7616_3TS_0026.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0011.dcm File2: /home/fsuser/LT7616_3TS_0026.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0012.dcm File2: /home/fsuser/LT7616_3TS_0026.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0013.dcm File2: /home/fsuser/LT7616_3TS_0026.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0014.dcm File2: /home/fsuser/LT7616_3TS_0026.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0015.dcm File2: /home/fsuser/LT7616_3TS_0026.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0016.dcm File2: /home/fsuser/LT7616_3TS_0026.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0017.dcm File2: /home/fsuser/LT7616_3TS_0026.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0018.dcm File2: /home/fsuser/LT7616_3TS_0026.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0019.dcm File2: /home/fsuser/LT7616_3TS_0026.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0020.dcm File2: /home/fsuser/LT7616_3TS_0026.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0021.dcm File2: /home/fsuser/LT7616_3TS_0026.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0022.dcm File2: /home/fsuser/LT7616_3TS_0026.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0023.dcm File2: /home/fsuser/LT7616_3TS_0026.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0024.dcm File2: /home/fsuser/LT7616_3TS_0026.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0025.dcm File2: /home/fsuser/LT7616_3TS_0026.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0052.dcm File2: /home/fsuser/LT7616_3TS_0053.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0051.dcm File2: /home/fsuser/LT7616_3TS_0052.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0055.dcm File2: /home/fsuser/LT7616_3TS_0056.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0054.dcm File2: /home/fsuser/LT7616_3TS_0055.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0051.dcm File2: /home/fsuser/LT7616_3TS_0054.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0052.dcm File2: /home/fsuser/LT7616_3TS_0054.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0053.dcm File2: /home/fsuser/LT7616_3TS_0054.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0058.dcm File2: /home/fsuser/LT7616_3TS_0059.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0057.dcm File2: /home/fsuser/LT7616_3TS_0058.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0061.dcm File2: /home/fsuser/LT7616_3TS_0062.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0060.dcm File2: /home/fsuser/LT7616_3TS_0061.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0057.dcm File2: /home/fsuser/LT7616_3TS_0060.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0058.dcm File2: /home/fsuser/LT7616_3TS_0060.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0059.dcm File2: /home/fsuser/LT7616_3TS_0060.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0051.dcm File2: /home/fsuser/LT7616_3TS_0057.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0052.dcm File2: /home/fsuser/LT7616_3TS_0057.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0053.dcm File2: /home/fsuser/LT7616_3TS_0057.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0054.dcm File2: /home/fsuser/LT7616_3TS_0057.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0055.dcm File2: /home/fsuser/LT7616_3TS_0057.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0056.dcm File2: /home/fsuser/LT7616_3TS_0057.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0064.dcm File2: /home/fsuser/LT7616_3TS_0065.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0063.dcm File2: /home/fsuser/LT7616_3TS_0064.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0067.dcm File2: /home/fsuser/LT7616_3TS_0068.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0066.dcm File2: /home/fsuser/LT7616_3TS_0067.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0063.dcm File2: /home/fsuser/LT7616_3TS_0066.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0064.dcm File2: /home/fsuser/LT7616_3TS_0066.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0065.dcm File2: /home/fsuser/LT7616_3TS_0066.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0070.dcm File2: /home/fsuser/LT7616_3TS_0071.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0069.dcm File2: /home/fsuser/LT7616_3TS_0070.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0072.dcm File2: /home/fsuser/LT7616_3TS_0073.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0074.dcm File2: /home/fsuser/LT7616_3TS_0075.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0072.dcm File2: /home/fsuser/LT7616_3TS_0074.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0073.dcm File2: /home/fsuser/LT7616_3TS_0074.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0069.dcm File2: /home/fsuser/LT7616_3TS_0072.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0070.dcm File2: /home/fsuser/LT7616_3TS_0072.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0071.dcm File2: /home/fsuser/LT7616_3TS_0072.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0063.dcm File2: /home/fsuser/LT7616_3TS_0069.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0064.dcm File2: /home/fsuser/LT7616_3TS_0069.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0065.dcm File2: /home/fsuser/LT7616_3TS_0069.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0066.dcm File2: /home/fsuser/LT7616_3TS_0069.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0067.dcm File2: /home/fsuser/LT7616_3TS_0069.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0068.dcm File2: /home/fsuser/LT7616_3TS_0069.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0051.dcm File2: /home/fsuser/LT7616_3TS_0063.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0052.dcm File2: /home/fsuser/LT7616_3TS_0063.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0053.dcm File2: /home/fsuser/LT7616_3TS_0063.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0054.dcm File2: /home/fsuser/LT7616_3TS_0063.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0055.dcm File2: /home/fsuser/LT7616_3TS_0063.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0056.dcm File2: /home/fsuser/LT7616_3TS_0063.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0057.dcm File2: /home/fsuser/LT7616_3TS_0063.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0058.dcm File2: /home/fsuser/LT7616_3TS_0063.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0059.dcm File2: /home/fsuser/LT7616_3TS_0063.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0060.dcm File2: /home/fsuser/LT7616_3TS_0063.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0061.dcm File2: /home/fsuser/LT7616_3TS_0063.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0062.dcm File2: /home/fsuser/LT7616_3TS_0063.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0077.dcm File2: /home/fsuser/LT7616_3TS_0078.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0076.dcm File2: /home/fsuser/LT7616_3TS_0077.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0080.dcm File2: /home/fsuser/LT7616_3TS_0081.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0079.dcm File2: /home/fsuser/LT7616_3TS_0080.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0076.dcm File2: /home/fsuser/LT7616_3TS_0079.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0077.dcm File2: /home/fsuser/LT7616_3TS_0079.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0078.dcm File2: /home/fsuser/LT7616_3TS_0079.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0083.dcm File2: /home/fsuser/LT7616_3TS_0084.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0082.dcm File2: /home/fsuser/LT7616_3TS_0083.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0086.dcm File2: /home/fsuser/LT7616_3TS_0087.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0085.dcm File2: /home/fsuser/LT7616_3TS_0086.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0082.dcm File2: /home/fsuser/LT7616_3TS_0085.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0083.dcm File2: /home/fsuser/LT7616_3TS_0085.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0084.dcm File2: /home/fsuser/LT7616_3TS_0085.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0076.dcm File2: /home/fsuser/LT7616_3TS_0082.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0077.dcm File2: /home/fsuser/LT7616_3TS_0082.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0078.dcm File2: /home/fsuser/LT7616_3TS_0082.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0079.dcm File2: /home/fsuser/LT7616_3TS_0082.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0080.dcm File2: /home/fsuser/LT7616_3TS_0082.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0081.dcm File2: /home/fsuser/LT7616_3TS_0082.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0089.dcm File2: /home/fsuser/LT7616_3TS_0090.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0088.dcm File2: /home/fsuser/LT7616_3TS_0089.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0092.dcm File2: /home/fsuser/LT7616_3TS_0093.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0091.dcm File2: /home/fsuser/LT7616_3TS_0092.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0088.dcm File2: /home/fsuser/LT7616_3TS_0091.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0089.dcm File2: /home/fsuser/LT7616_3TS_0091.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0090.dcm File2: /home/fsuser/LT7616_3TS_0091.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0095.dcm File2: /home/fsuser/LT7616_3TS_0096.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0094.dcm File2: /home/fsuser/LT7616_3TS_0095.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0097.dcm File2: /home/fsuser/LT7616_3TS_0098.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0099.dcm File2: /home/fsuser/LT7616_3TS_0100.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0097.dcm File2: /home/fsuser/LT7616_3TS_0099.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0098.dcm File2: /home/fsuser/LT7616_3TS_0099.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0094.dcm File2: /home/fsuser/LT7616_3TS_0097.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0095.dcm File2: /home/fsuser/LT7616_3TS_0097.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0096.dcm File2: /home/fsuser/LT7616_3TS_0097.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0088.dcm File2: /home/fsuser/LT7616_3TS_0094.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0089.dcm File2: /home/fsuser/LT7616_3TS_0094.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0090.dcm File2: /home/fsuser/LT7616_3TS_0094.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0091.dcm File2: /home/fsuser/LT7616_3TS_0094.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0092.dcm File2: /home/fsuser/LT7616_3TS_0094.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0093.dcm File2: /home/fsuser/LT7616_3TS_0094.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0076.dcm File2: /home/fsuser/LT7616_3TS_0088.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0077.dcm File2: /home/fsuser/LT7616_3TS_0088.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0078.dcm File2: /home/fsuser/LT7616_3TS_0088.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0079.dcm File2: /home/fsuser/LT7616_3TS_0088.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0080.dcm File2: /home/fsuser/LT7616_3TS_0088.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0081.dcm File2: /home/fsuser/LT7616_3TS_0088.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0082.dcm File2: /home/fsuser/LT7616_3TS_0088.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0083.dcm File2: /home/fsuser/LT7616_3TS_0088.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0084.dcm File2: /home/fsuser/LT7616_3TS_0088.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0085.dcm File2: /home/fsuser/LT7616_3TS_0088.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0086.dcm File2: /home/fsuser/LT7616_3TS_0088.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0087.dcm File2: /home/fsuser/LT7616_3TS_0088.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0051.dcm File2: /home/fsuser/LT7616_3TS_0076.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0052.dcm File2: 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/home/fsuser/LT7616_3TS_0059.dcm File2: /home/fsuser/LT7616_3TS_0076.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0060.dcm File2: /home/fsuser/LT7616_3TS_0076.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0061.dcm File2: /home/fsuser/LT7616_3TS_0076.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0062.dcm File2: /home/fsuser/LT7616_3TS_0076.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0063.dcm File2: /home/fsuser/LT7616_3TS_0076.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0064.dcm File2: /home/fsuser/LT7616_3TS_0076.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0065.dcm File2: /home/fsuser/LT7616_3TS_0076.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0066.dcm File2: /home/fsuser/LT7616_3TS_0076.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0067.dcm File2: /home/fsuser/LT7616_3TS_0076.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0068.dcm File2: /home/fsuser/LT7616_3TS_0076.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0069.dcm File2: /home/fsuser/LT7616_3TS_0076.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0070.dcm File2: /home/fsuser/LT7616_3TS_0076.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0071.dcm File2: /home/fsuser/LT7616_3TS_0076.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0072.dcm File2: /home/fsuser/LT7616_3TS_0076.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0073.dcm File2: /home/fsuser/LT7616_3TS_0076.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0074.dcm File2: /home/fsuser/LT7616_3TS_0076.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0075.dcm File2: /home/fsuser/LT7616_3TS_0076.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0001.dcm File2: /home/fsuser/LT7616_3TS_0051.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0002.dcm File2: /home/fsuser/LT7616_3TS_0051.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0003.dcm File2: /home/fsuser/LT7616_3TS_0051.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0004.dcm File2: /home/fsuser/LT7616_3TS_0051.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0005.dcm File2: /home/fsuser/LT7616_3TS_0051.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0006.dcm File2: /home/fsuser/LT7616_3TS_0051.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0007.dcm File2: /home/fsuser/LT7616_3TS_0051.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0008.dcm File2: /home/fsuser/LT7616_3TS_0051.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0009.dcm File2: /home/fsuser/LT7616_3TS_0051.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0010.dcm File2: /home/fsuser/LT7616_3TS_0051.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0011.dcm File2: 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cannot be sorted File1: /home/fsuser/LT7616_3TS_0025.dcm File2: /home/fsuser/LT7616_3TS_0051.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0026.dcm File2: /home/fsuser/LT7616_3TS_0051.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0027.dcm File2: /home/fsuser/LT7616_3TS_0051.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0028.dcm File2: /home/fsuser/LT7616_3TS_0051.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0029.dcm File2: /home/fsuser/LT7616_3TS_0051.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0030.dcm File2: /home/fsuser/LT7616_3TS_0051.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0031.dcm File2: /home/fsuser/LT7616_3TS_0051.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0032.dcm File2: /home/fsuser/LT7616_3TS_0051.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0033.dcm File2: /home/fsuser/LT7616_3TS_0051.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0034.dcm File2: /home/fsuser/LT7616_3TS_0051.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0035.dcm File2: /home/fsuser/LT7616_3TS_0051.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0036.dcm File2: /home/fsuser/LT7616_3TS_0051.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0037.dcm File2: /home/fsuser/LT7616_3TS_0051.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0038.dcm File2: /home/fsuser/LT7616_3TS_0051.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0039.dcm File2: /home/fsuser/LT7616_3TS_0051.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0040.dcm File2: /home/fsuser/LT7616_3TS_0051.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0041.dcm File2: /home/fsuser/LT7616_3TS_0051.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0042.dcm File2: /home/fsuser/LT7616_3TS_0051.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0043.dcm File2: /home/fsuser/LT7616_3TS_0051.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0044.dcm File2: /home/fsuser/LT7616_3TS_0051.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0045.dcm File2: /home/fsuser/LT7616_3TS_0051.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0046.dcm File2: /home/fsuser/LT7616_3TS_0051.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0047.dcm File2: /home/fsuser/LT7616_3TS_0051.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0048.dcm File2: /home/fsuser/LT7616_3TS_0051.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0049.dcm File2: /home/fsuser/LT7616_3TS_0051.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0050.dcm File2: /home/fsuser/LT7616_3TS_0051.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0102.dcm File2: /home/fsuser/LT7616_3TS_0103.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0101.dcm File2: /home/fsuser/LT7616_3TS_0102.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0105.dcm File2: /home/fsuser/LT7616_3TS_0106.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0104.dcm File2: /home/fsuser/LT7616_3TS_0105.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0101.dcm File2: /home/fsuser/LT7616_3TS_0104.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0102.dcm File2: /home/fsuser/LT7616_3TS_0104.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0103.dcm File2: /home/fsuser/LT7616_3TS_0104.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0108.dcm File2: /home/fsuser/LT7616_3TS_0109.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0107.dcm File2: /home/fsuser/LT7616_3TS_0108.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0111.dcm File2: /home/fsuser/LT7616_3TS_0112.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0110.dcm File2: /home/fsuser/LT7616_3TS_0111.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0107.dcm File2: /home/fsuser/LT7616_3TS_0110.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0108.dcm File2: /home/fsuser/LT7616_3TS_0110.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0109.dcm File2: /home/fsuser/LT7616_3TS_0110.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0101.dcm File2: /home/fsuser/LT7616_3TS_0107.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0102.dcm File2: /home/fsuser/LT7616_3TS_0107.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0103.dcm File2: /home/fsuser/LT7616_3TS_0107.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0104.dcm File2: /home/fsuser/LT7616_3TS_0107.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0105.dcm File2: /home/fsuser/LT7616_3TS_0107.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0106.dcm File2: /home/fsuser/LT7616_3TS_0107.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0114.dcm File2: /home/fsuser/LT7616_3TS_0115.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0113.dcm File2: /home/fsuser/LT7616_3TS_0114.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0117.dcm File2: /home/fsuser/LT7616_3TS_0118.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0116.dcm File2: /home/fsuser/LT7616_3TS_0117.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0113.dcm File2: /home/fsuser/LT7616_3TS_0116.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0114.dcm File2: /home/fsuser/LT7616_3TS_0116.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0115.dcm File2: /home/fsuser/LT7616_3TS_0116.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0120.dcm File2: /home/fsuser/LT7616_3TS_0121.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0119.dcm File2: /home/fsuser/LT7616_3TS_0120.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0122.dcm File2: /home/fsuser/LT7616_3TS_0123.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0124.dcm File2: /home/fsuser/LT7616_3TS_0125.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0122.dcm File2: /home/fsuser/LT7616_3TS_0124.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0123.dcm File2: /home/fsuser/LT7616_3TS_0124.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0119.dcm File2: /home/fsuser/LT7616_3TS_0122.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0120.dcm File2: /home/fsuser/LT7616_3TS_0122.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0121.dcm File2: /home/fsuser/LT7616_3TS_0122.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0113.dcm File2: /home/fsuser/LT7616_3TS_0119.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0114.dcm File2: /home/fsuser/LT7616_3TS_0119.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0115.dcm File2: /home/fsuser/LT7616_3TS_0119.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0116.dcm File2: /home/fsuser/LT7616_3TS_0119.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0117.dcm File2: /home/fsuser/LT7616_3TS_0119.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0118.dcm File2: /home/fsuser/LT7616_3TS_0119.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0101.dcm File2: /home/fsuser/LT7616_3TS_0113.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0102.dcm File2: /home/fsuser/LT7616_3TS_0113.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0103.dcm File2: /home/fsuser/LT7616_3TS_0113.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0104.dcm File2: /home/fsuser/LT7616_3TS_0113.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0105.dcm File2: /home/fsuser/LT7616_3TS_0113.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0106.dcm File2: /home/fsuser/LT7616_3TS_0113.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0107.dcm File2: /home/fsuser/LT7616_3TS_0113.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0108.dcm File2: /home/fsuser/LT7616_3TS_0113.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0109.dcm File2: /home/fsuser/LT7616_3TS_0113.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0110.dcm File2: /home/fsuser/LT7616_3TS_0113.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0111.dcm File2: /home/fsuser/LT7616_3TS_0113.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0112.dcm File2: /home/fsuser/LT7616_3TS_0113.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0127.dcm File2: /home/fsuser/LT7616_3TS_0128.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0126.dcm File2: /home/fsuser/LT7616_3TS_0127.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0130.dcm File2: /home/fsuser/LT7616_3TS_0131.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0129.dcm File2: /home/fsuser/LT7616_3TS_0130.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0126.dcm File2: /home/fsuser/LT7616_3TS_0129.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0127.dcm File2: /home/fsuser/LT7616_3TS_0129.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0128.dcm File2: /home/fsuser/LT7616_3TS_0129.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0133.dcm File2: /home/fsuser/LT7616_3TS_0134.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0132.dcm File2: 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cannot be sorted File1: /home/fsuser/LT7616_3TS_0142.dcm File2: /home/fsuser/LT7616_3TS_0143.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0141.dcm File2: /home/fsuser/LT7616_3TS_0142.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0138.dcm File2: /home/fsuser/LT7616_3TS_0141.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0139.dcm File2: /home/fsuser/LT7616_3TS_0141.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0140.dcm File2: /home/fsuser/LT7616_3TS_0141.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0145.dcm File2: /home/fsuser/LT7616_3TS_0146.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0144.dcm File2: /home/fsuser/LT7616_3TS_0145.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0147.dcm File2: /home/fsuser/LT7616_3TS_0148.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0149.dcm File2: /home/fsuser/LT7616_3TS_0150.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0147.dcm File2: /home/fsuser/LT7616_3TS_0149.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0148.dcm File2: /home/fsuser/LT7616_3TS_0149.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0144.dcm File2: /home/fsuser/LT7616_3TS_0147.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0145.dcm File2: /home/fsuser/LT7616_3TS_0147.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0146.dcm File2: /home/fsuser/LT7616_3TS_0147.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0138.dcm File2: /home/fsuser/LT7616_3TS_0144.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0139.dcm File2: /home/fsuser/LT7616_3TS_0144.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0140.dcm File2: /home/fsuser/LT7616_3TS_0144.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0141.dcm File2: /home/fsuser/LT7616_3TS_0144.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0142.dcm File2: /home/fsuser/LT7616_3TS_0144.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0143.dcm File2: /home/fsuser/LT7616_3TS_0144.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0126.dcm File2: 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cannot be sorted File1: /home/fsuser/LT7616_3TS_0103.dcm File2: /home/fsuser/LT7616_3TS_0126.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0104.dcm File2: /home/fsuser/LT7616_3TS_0126.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0105.dcm File2: /home/fsuser/LT7616_3TS_0126.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0106.dcm File2: /home/fsuser/LT7616_3TS_0126.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0107.dcm File2: /home/fsuser/LT7616_3TS_0126.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0108.dcm File2: /home/fsuser/LT7616_3TS_0126.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0109.dcm File2: /home/fsuser/LT7616_3TS_0126.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0110.dcm File2: /home/fsuser/LT7616_3TS_0126.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0111.dcm File2: /home/fsuser/LT7616_3TS_0126.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0112.dcm File2: /home/fsuser/LT7616_3TS_0126.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0113.dcm File2: /home/fsuser/LT7616_3TS_0126.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0114.dcm File2: /home/fsuser/LT7616_3TS_0126.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0115.dcm File2: /home/fsuser/LT7616_3TS_0126.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0116.dcm File2: /home/fsuser/LT7616_3TS_0126.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0117.dcm File2: /home/fsuser/LT7616_3TS_0126.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0118.dcm File2: /home/fsuser/LT7616_3TS_0126.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0119.dcm File2: /home/fsuser/LT7616_3TS_0126.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0120.dcm File2: /home/fsuser/LT7616_3TS_0126.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0121.dcm File2: /home/fsuser/LT7616_3TS_0126.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0122.dcm File2: /home/fsuser/LT7616_3TS_0126.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0123.dcm File2: 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cannot be sorted File1: /home/fsuser/LT7616_3TS_0157.dcm File2: /home/fsuser/LT7616_3TS_0160.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0158.dcm File2: /home/fsuser/LT7616_3TS_0160.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0159.dcm File2: /home/fsuser/LT7616_3TS_0160.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0151.dcm File2: /home/fsuser/LT7616_3TS_0157.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0152.dcm File2: /home/fsuser/LT7616_3TS_0157.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0153.dcm File2: /home/fsuser/LT7616_3TS_0157.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0154.dcm File2: /home/fsuser/LT7616_3TS_0157.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0155.dcm File2: /home/fsuser/LT7616_3TS_0157.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0156.dcm File2: /home/fsuser/LT7616_3TS_0157.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0164.dcm File2: /home/fsuser/LT7616_3TS_0165.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0163.dcm File2: /home/fsuser/LT7616_3TS_0164.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0167.dcm File2: /home/fsuser/LT7616_3TS_0168.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0166.dcm File2: /home/fsuser/LT7616_3TS_0167.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0163.dcm File2: /home/fsuser/LT7616_3TS_0166.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0164.dcm File2: /home/fsuser/LT7616_3TS_0166.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0165.dcm File2: /home/fsuser/LT7616_3TS_0166.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0170.dcm File2: /home/fsuser/LT7616_3TS_0171.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0169.dcm File2: /home/fsuser/LT7616_3TS_0170.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0172.dcm File2: /home/fsuser/LT7616_3TS_0173.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0174.dcm File2: /home/fsuser/LT7616_3TS_0175.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0172.dcm File2: 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cannot be sorted File1: /home/fsuser/LT7616_3TS_0154.dcm File2: /home/fsuser/LT7616_3TS_0163.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0155.dcm File2: /home/fsuser/LT7616_3TS_0163.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0156.dcm File2: /home/fsuser/LT7616_3TS_0163.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0157.dcm File2: /home/fsuser/LT7616_3TS_0163.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0158.dcm File2: /home/fsuser/LT7616_3TS_0163.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0159.dcm File2: /home/fsuser/LT7616_3TS_0163.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0160.dcm File2: /home/fsuser/LT7616_3TS_0163.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0161.dcm File2: /home/fsuser/LT7616_3TS_0163.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0162.dcm File2: /home/fsuser/LT7616_3TS_0163.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0177.dcm File2: /home/fsuser/LT7616_3TS_0178.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0176.dcm File2: /home/fsuser/LT7616_3TS_0177.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0180.dcm File2: /home/fsuser/LT7616_3TS_0181.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0179.dcm File2: /home/fsuser/LT7616_3TS_0180.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0176.dcm File2: /home/fsuser/LT7616_3TS_0179.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0177.dcm File2: /home/fsuser/LT7616_3TS_0179.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0178.dcm File2: /home/fsuser/LT7616_3TS_0179.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0183.dcm File2: /home/fsuser/LT7616_3TS_0184.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0182.dcm File2: /home/fsuser/LT7616_3TS_0183.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0186.dcm File2: /home/fsuser/LT7616_3TS_0187.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0185.dcm File2: /home/fsuser/LT7616_3TS_0186.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0182.dcm File2: 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cannot be sorted File1: /home/fsuser/LT7616_3TS_0189.dcm File2: /home/fsuser/LT7616_3TS_0191.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0190.dcm File2: /home/fsuser/LT7616_3TS_0191.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0195.dcm File2: /home/fsuser/LT7616_3TS_0196.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0194.dcm File2: /home/fsuser/LT7616_3TS_0195.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0197.dcm File2: /home/fsuser/LT7616_3TS_0198.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0199.dcm File2: /home/fsuser/LT7616_3TS_0200.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0197.dcm File2: /home/fsuser/LT7616_3TS_0199.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0198.dcm File2: /home/fsuser/LT7616_3TS_0199.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0194.dcm File2: /home/fsuser/LT7616_3TS_0197.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0195.dcm File2: /home/fsuser/LT7616_3TS_0197.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0196.dcm File2: /home/fsuser/LT7616_3TS_0197.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0188.dcm File2: /home/fsuser/LT7616_3TS_0194.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0189.dcm File2: /home/fsuser/LT7616_3TS_0194.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0190.dcm File2: /home/fsuser/LT7616_3TS_0194.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0191.dcm File2: /home/fsuser/LT7616_3TS_0194.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0192.dcm File2: /home/fsuser/LT7616_3TS_0194.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0193.dcm File2: /home/fsuser/LT7616_3TS_0194.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0176.dcm File2: /home/fsuser/LT7616_3TS_0188.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0177.dcm File2: /home/fsuser/LT7616_3TS_0188.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0178.dcm File2: /home/fsuser/LT7616_3TS_0188.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0179.dcm File2: 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cannot be sorted File1: /home/fsuser/LT7616_3TS_0156.dcm File2: /home/fsuser/LT7616_3TS_0176.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0157.dcm File2: /home/fsuser/LT7616_3TS_0176.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0158.dcm File2: /home/fsuser/LT7616_3TS_0176.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0159.dcm File2: /home/fsuser/LT7616_3TS_0176.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0160.dcm File2: /home/fsuser/LT7616_3TS_0176.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0161.dcm File2: /home/fsuser/LT7616_3TS_0176.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0162.dcm File2: /home/fsuser/LT7616_3TS_0176.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0163.dcm File2: /home/fsuser/LT7616_3TS_0176.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0164.dcm File2: /home/fsuser/LT7616_3TS_0176.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0165.dcm File2: /home/fsuser/LT7616_3TS_0176.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0166.dcm File2: /home/fsuser/LT7616_3TS_0176.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0167.dcm File2: /home/fsuser/LT7616_3TS_0176.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0168.dcm File2: /home/fsuser/LT7616_3TS_0176.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0169.dcm File2: /home/fsuser/LT7616_3TS_0176.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0170.dcm File2: /home/fsuser/LT7616_3TS_0176.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0171.dcm File2: /home/fsuser/LT7616_3TS_0176.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0172.dcm File2: /home/fsuser/LT7616_3TS_0176.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0173.dcm File2: /home/fsuser/LT7616_3TS_0176.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0174.dcm File2: /home/fsuser/LT7616_3TS_0176.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0175.dcm File2: /home/fsuser/LT7616_3TS_0176.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0101.dcm File2: /home/fsuser/LT7616_3TS_0151.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0102.dcm File2: /home/fsuser/LT7616_3TS_0151.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0103.dcm File2: /home/fsuser/LT7616_3TS_0151.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0104.dcm File2: /home/fsuser/LT7616_3TS_0151.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0105.dcm File2: /home/fsuser/LT7616_3TS_0151.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0106.dcm File2: /home/fsuser/LT7616_3TS_0151.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0107.dcm File2: /home/fsuser/LT7616_3TS_0151.dcm WARNING: files are not found to be different and cannot be sorted File1: 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cannot be sorted File1: /home/fsuser/LT7616_3TS_0115.dcm File2: /home/fsuser/LT7616_3TS_0151.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0116.dcm File2: /home/fsuser/LT7616_3TS_0151.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0117.dcm File2: /home/fsuser/LT7616_3TS_0151.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0118.dcm File2: /home/fsuser/LT7616_3TS_0151.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0119.dcm File2: /home/fsuser/LT7616_3TS_0151.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0120.dcm File2: /home/fsuser/LT7616_3TS_0151.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0121.dcm File2: /home/fsuser/LT7616_3TS_0151.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0122.dcm File2: /home/fsuser/LT7616_3TS_0151.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0123.dcm File2: /home/fsuser/LT7616_3TS_0151.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0124.dcm File2: /home/fsuser/LT7616_3TS_0151.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0125.dcm File2: /home/fsuser/LT7616_3TS_0151.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0126.dcm File2: /home/fsuser/LT7616_3TS_0151.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0127.dcm File2: /home/fsuser/LT7616_3TS_0151.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0128.dcm File2: /home/fsuser/LT7616_3TS_0151.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0129.dcm File2: /home/fsuser/LT7616_3TS_0151.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0130.dcm File2: /home/fsuser/LT7616_3TS_0151.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0131.dcm File2: /home/fsuser/LT7616_3TS_0151.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0132.dcm File2: /home/fsuser/LT7616_3TS_0151.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0133.dcm File2: /home/fsuser/LT7616_3TS_0151.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0134.dcm File2: /home/fsuser/LT7616_3TS_0151.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0135.dcm File2: /home/fsuser/LT7616_3TS_0151.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0136.dcm File2: /home/fsuser/LT7616_3TS_0151.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0137.dcm File2: /home/fsuser/LT7616_3TS_0151.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0138.dcm File2: /home/fsuser/LT7616_3TS_0151.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0139.dcm File2: /home/fsuser/LT7616_3TS_0151.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0140.dcm File2: /home/fsuser/LT7616_3TS_0151.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0141.dcm File2: /home/fsuser/LT7616_3TS_0151.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0142.dcm File2: /home/fsuser/LT7616_3TS_0151.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0143.dcm File2: /home/fsuser/LT7616_3TS_0151.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0144.dcm File2: /home/fsuser/LT7616_3TS_0151.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0145.dcm File2: /home/fsuser/LT7616_3TS_0151.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0146.dcm File2: /home/fsuser/LT7616_3TS_0151.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0147.dcm File2: /home/fsuser/LT7616_3TS_0151.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0148.dcm File2: /home/fsuser/LT7616_3TS_0151.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0149.dcm File2: /home/fsuser/LT7616_3TS_0151.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0150.dcm File2: /home/fsuser/LT7616_3TS_0151.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0001.dcm File2: /home/fsuser/LT7616_3TS_0101.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0002.dcm File2: /home/fsuser/LT7616_3TS_0101.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0003.dcm File2: /home/fsuser/LT7616_3TS_0101.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0004.dcm File2: /home/fsuser/LT7616_3TS_0101.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0005.dcm File2: /home/fsuser/LT7616_3TS_0101.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0006.dcm File2: /home/fsuser/LT7616_3TS_0101.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0007.dcm File2: /home/fsuser/LT7616_3TS_0101.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0008.dcm File2: /home/fsuser/LT7616_3TS_0101.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0009.dcm File2: /home/fsuser/LT7616_3TS_0101.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0010.dcm File2: /home/fsuser/LT7616_3TS_0101.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0011.dcm File2: /home/fsuser/LT7616_3TS_0101.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0012.dcm File2: /home/fsuser/LT7616_3TS_0101.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0013.dcm File2: /home/fsuser/LT7616_3TS_0101.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0014.dcm File2: /home/fsuser/LT7616_3TS_0101.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0015.dcm File2: /home/fsuser/LT7616_3TS_0101.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0016.dcm File2: /home/fsuser/LT7616_3TS_0101.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0017.dcm File2: /home/fsuser/LT7616_3TS_0101.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0018.dcm File2: /home/fsuser/LT7616_3TS_0101.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0019.dcm File2: /home/fsuser/LT7616_3TS_0101.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0020.dcm File2: /home/fsuser/LT7616_3TS_0101.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0021.dcm File2: /home/fsuser/LT7616_3TS_0101.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0022.dcm File2: /home/fsuser/LT7616_3TS_0101.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0023.dcm File2: /home/fsuser/LT7616_3TS_0101.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0024.dcm File2: /home/fsuser/LT7616_3TS_0101.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0025.dcm File2: /home/fsuser/LT7616_3TS_0101.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0026.dcm File2: /home/fsuser/LT7616_3TS_0101.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0027.dcm File2: /home/fsuser/LT7616_3TS_0101.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0028.dcm File2: /home/fsuser/LT7616_3TS_0101.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0029.dcm File2: /home/fsuser/LT7616_3TS_0101.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0030.dcm File2: /home/fsuser/LT7616_3TS_0101.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0031.dcm File2: /home/fsuser/LT7616_3TS_0101.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0032.dcm File2: /home/fsuser/LT7616_3TS_0101.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0033.dcm File2: /home/fsuser/LT7616_3TS_0101.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0034.dcm File2: /home/fsuser/LT7616_3TS_0101.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0035.dcm File2: /home/fsuser/LT7616_3TS_0101.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0036.dcm File2: /home/fsuser/LT7616_3TS_0101.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0037.dcm File2: /home/fsuser/LT7616_3TS_0101.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0038.dcm File2: /home/fsuser/LT7616_3TS_0101.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0039.dcm File2: /home/fsuser/LT7616_3TS_0101.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0040.dcm File2: /home/fsuser/LT7616_3TS_0101.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0041.dcm File2: /home/fsuser/LT7616_3TS_0101.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0042.dcm File2: /home/fsuser/LT7616_3TS_0101.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0043.dcm File2: /home/fsuser/LT7616_3TS_0101.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0044.dcm File2: /home/fsuser/LT7616_3TS_0101.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0045.dcm File2: /home/fsuser/LT7616_3TS_0101.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0046.dcm File2: /home/fsuser/LT7616_3TS_0101.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0047.dcm File2: /home/fsuser/LT7616_3TS_0101.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0048.dcm File2: /home/fsuser/LT7616_3TS_0101.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0049.dcm File2: /home/fsuser/LT7616_3TS_0101.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0050.dcm File2: /home/fsuser/LT7616_3TS_0101.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0051.dcm File2: /home/fsuser/LT7616_3TS_0101.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0052.dcm File2: /home/fsuser/LT7616_3TS_0101.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0053.dcm File2: /home/fsuser/LT7616_3TS_0101.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0054.dcm File2: /home/fsuser/LT7616_3TS_0101.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0055.dcm File2: /home/fsuser/LT7616_3TS_0101.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0056.dcm File2: /home/fsuser/LT7616_3TS_0101.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0057.dcm File2: /home/fsuser/LT7616_3TS_0101.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0058.dcm File2: /home/fsuser/LT7616_3TS_0101.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0059.dcm File2: /home/fsuser/LT7616_3TS_0101.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0060.dcm File2: /home/fsuser/LT7616_3TS_0101.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0061.dcm File2: /home/fsuser/LT7616_3TS_0101.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0062.dcm File2: /home/fsuser/LT7616_3TS_0101.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0063.dcm File2: /home/fsuser/LT7616_3TS_0101.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0064.dcm File2: /home/fsuser/LT7616_3TS_0101.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0065.dcm File2: /home/fsuser/LT7616_3TS_0101.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0066.dcm File2: /home/fsuser/LT7616_3TS_0101.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0067.dcm File2: /home/fsuser/LT7616_3TS_0101.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0068.dcm File2: /home/fsuser/LT7616_3TS_0101.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0069.dcm File2: /home/fsuser/LT7616_3TS_0101.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0070.dcm File2: /home/fsuser/LT7616_3TS_0101.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0071.dcm File2: /home/fsuser/LT7616_3TS_0101.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0072.dcm File2: /home/fsuser/LT7616_3TS_0101.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0073.dcm File2: /home/fsuser/LT7616_3TS_0101.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0074.dcm File2: /home/fsuser/LT7616_3TS_0101.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0075.dcm File2: /home/fsuser/LT7616_3TS_0101.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0076.dcm File2: /home/fsuser/LT7616_3TS_0101.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0077.dcm File2: /home/fsuser/LT7616_3TS_0101.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0078.dcm File2: /home/fsuser/LT7616_3TS_0101.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0079.dcm File2: /home/fsuser/LT7616_3TS_0101.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0080.dcm File2: /home/fsuser/LT7616_3TS_0101.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0081.dcm File2: /home/fsuser/LT7616_3TS_0101.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0082.dcm File2: /home/fsuser/LT7616_3TS_0101.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0083.dcm File2: /home/fsuser/LT7616_3TS_0101.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0084.dcm File2: /home/fsuser/LT7616_3TS_0101.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0085.dcm File2: /home/fsuser/LT7616_3TS_0101.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0086.dcm File2: /home/fsuser/LT7616_3TS_0101.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0087.dcm File2: /home/fsuser/LT7616_3TS_0101.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0088.dcm File2: /home/fsuser/LT7616_3TS_0101.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0089.dcm File2: /home/fsuser/LT7616_3TS_0101.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0090.dcm File2: /home/fsuser/LT7616_3TS_0101.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0091.dcm File2: /home/fsuser/LT7616_3TS_0101.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0092.dcm File2: /home/fsuser/LT7616_3TS_0101.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0093.dcm File2: /home/fsuser/LT7616_3TS_0101.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0094.dcm File2: /home/fsuser/LT7616_3TS_0101.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0095.dcm File2: /home/fsuser/LT7616_3TS_0101.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0096.dcm File2: /home/fsuser/LT7616_3TS_0101.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0097.dcm File2: /home/fsuser/LT7616_3TS_0101.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0098.dcm File2: /home/fsuser/LT7616_3TS_0101.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0099.dcm File2: /home/fsuser/LT7616_3TS_0101.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/LT7616_3TS_0100.dcm File2: /home/fsuser/LT7616_3TS_0101.dcm Computing Slice Direction Vs: -0.090428 -0.231171 0.968702 Vs: -0.090428 -0.231171 0.968702 Second Sorting Counting frames nframes = 1 nslices = 200 ndcmfiles = 200 PE Dir = OTHER (dicom read) TransferSyntaxUID: --1.2.840.10008.1.2-- Loading pixel data TR=8.08, TE=3.76, TI=0.00, flip angle=8.00 i_ras = (-0.995718, 0.00224951, 0.0924132) j_ras = (0.0191841, -0.972911, 0.230384) k_ras = (0.090428, 0.231171, 0.968702) writing to /usr/local/freesurfer/subjects/test1/mri/orig/001.mgz... #-------------------------------------------- #@# MotionCor Thu Jun 30 16:28:12 EDT 2016 Found 1 runs /usr/local/freesurfer/subjects/test1/mri/orig/001.mgz Checking for (invalid) multi-frame inputs... WARNING: only one run found. This is OK, but motion correction cannot be performed on one run, so I'll copy the run to rawavg and continue. cp /usr/local/freesurfer/subjects/test1/mri/orig/001.mgz /usr/local/freesurfer/subjects/test1/mri/rawavg.mgz /usr/local/freesurfer/subjects/test1 mri_convert /usr/local/freesurfer/subjects/test1/mri/rawavg.mgz /usr/local/freesurfer/subjects/test1/mri/orig.mgz --conform mri_convert /usr/local/freesurfer/subjects/test1/mri/rawavg.mgz /usr/local/freesurfer/subjects/test1/mri/orig.mgz --conform $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $ reading from /usr/local/freesurfer/subjects/test1/mri/rawavg.mgz... TR=8.08, TE=3.76, TI=0.00, flip angle=8.00 i_ras = (-0.995718, 0.00224951, 0.0924132) j_ras = (0.0191841, -0.972911, 0.230384) k_ras = (0.090428, 0.231171, 0.968702) Original Data has (1, 1, 1) mm size and (240, 240, 200) voxels. Data is conformed to 1 mm size and 256 voxels for all directions changing data type from short to uchar (noscale = 0)... MRIchangeType: Building histogram Reslicing using trilinear interpolation writing to /usr/local/freesurfer/subjects/test1/mri/orig.mgz... mri_add_xform_to_header -c /usr/local/freesurfer/subjects/test1/mri/transforms/talairach.xfm /usr/local/freesurfer/subjects/test1/mri/orig.mgz /usr/local/freesurfer/subjects/test1/mri/orig.mgz INFO: extension is mgz #-------------------------------------------- #@# Talairach Thu Jun 30 16:28:22 EDT 2016 /usr/local/freesurfer/subjects/test1/mri mri_nu_correct.mni --n 1 --proto-iters 1000 --distance 50 --no-rescale --i orig.mgz --o orig_nu.mgz talairach_avi --i orig_nu.mgz --xfm transforms/talairach.auto.xfm cp transforms/talairach.auto.xfm transforms/talairach.xfm #-------------------------------------------- #@# Talairach Failure Detection Thu Jun 30 16:30:02 EDT 2016 /usr/local/freesurfer/subjects/test1/mri talairach_afd -T 0.005 -xfm transforms/talairach.xfm talairach_afd: Talairach Transform: transforms/talairach.xfm OK (p=0.6698, pval=0.3663 >= threshold=0.0050) awk -f /usr/local/freesurfer/bin/extract_talairach_avi_QA.awk /usr/local/freesurfer/subjects/test1/mri/transforms/talairach_avi.log tal_QC_AZS /usr/local/freesurfer/subjects/test1/mri/transforms/talairach_avi.log TalAviQA: 0.96559 z-score: -2 #-------------------------------------------- #@# Nu Intensity Correction Thu Jun 30 16:30:02 EDT 2016 mri_nu_correct.mni --i orig.mgz --o nu.mgz --uchar transforms/talairach.xfm --n 2 /usr/local/freesurfer/subjects/test1/mri /usr/local/freesurfer/bin/mri_nu_correct.mni --i orig.mgz --o nu.mgz --uchar transforms/talairach.xfm --n 2 nIters 2 $Id: mri_nu_correct.mni,v 1.18.2.1 2013/01/09 21:23:42 nicks Exp $ Linux xubuntu-VirtualBox 3.2.0-23-generic #36-Ubuntu SMP Tue Apr 10 20:41:14 UTC 2012 i686 i686 i386 GNU/Linux Thu Jun 30 16:30:02 EDT 2016 Program nu_correct, built from: Package MNI N3, version 1.10, compiled by nicks@fishie (i686-pc-linux-gnu) on 2010-02-20 at 20:19:13 tmpdir is ./tmp.mri_nu_correct.mni.3693 /usr/local/freesurfer/subjects/test1/mri mri_convert orig.mgz ./tmp.mri_nu_correct.mni.3693/nu0.mnc -odt float mri_convert orig.mgz ./tmp.mri_nu_correct.mni.3693/nu0.mnc -odt float $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $ reading from orig.mgz... TR=8.08, TE=3.76, TI=0.00, flip angle=8.00 i_ras = (-1, 0, 7.45058e-09) j_ras = (7.45058e-09, 0, -1) k_ras = (-1.86265e-09, 1, 0) changing data type from uchar to float (noscale = 0)... writing to ./tmp.mri_nu_correct.mni.3693/nu0.mnc... -------------------------------------------------------- Iteration 1 Thu Jun 30 16:30:04 EDT 2016 nu_correct -clobber ./tmp.mri_nu_correct.mni.3693/nu0.mnc ./tmp.mri_nu_correct.mni.3693/nu1.mnc -tmpdir ./tmp.mri_nu_correct.mni.3693/0/ [fsuser@xubuntu-VirtualBox:/usr/local/freesurfer/subjects/test1/mri/] [2016-06-30 16:30:04] running: /usr/local/freesurfer/mni/bin/nu_estimate_np_and_em -parzen -log -sharpen 0.15 0.01 -iterations 50 -stop 0.001 -shrink 4 -auto_mask -nonotify -b_spline 1 -distance 200 -quiet -execute -clobber -nokeeptmp -tmpdir ./tmp.mri_nu_correct.mni.3693/0/ ./tmp.mri_nu_correct.mni.3693/nu0.mnc ./tmp.mri_nu_correct.mni.3693/nu1.imp Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Number of iterations: 50 CV of field change: 0.00136954 [fsuser@xubuntu-VirtualBox:/usr/local/freesurfer/subjects/test1/mri/] [2016-06-30 16:30:30] running: /usr/local/freesurfer/mni/bin/make_template -quiet -shrink 3 ./tmp.mri_nu_correct.mni.3693/nu0.mnc ./tmp.mri_nu_correct.mni.3693/0//template.mnc Transforming slices:......................................................................................Done Transforming slices:................................................................................................................................................................................................................................................................Done -------------------------------------------------------- Iteration 2 Thu Jun 30 16:30:34 EDT 2016 nu_correct -clobber ./tmp.mri_nu_correct.mni.3693/nu1.mnc ./tmp.mri_nu_correct.mni.3693/nu2.mnc -tmpdir ./tmp.mri_nu_correct.mni.3693/1/ [fsuser@xubuntu-VirtualBox:/usr/local/freesurfer/subjects/test1/mri/] [2016-06-30 16:30:34] running: /usr/local/freesurfer/mni/bin/nu_estimate_np_and_em -parzen -log -sharpen 0.15 0.01 -iterations 50 -stop 0.001 -shrink 4 -auto_mask -nonotify -b_spline 1 -distance 200 -quiet -execute -clobber -nokeeptmp -tmpdir ./tmp.mri_nu_correct.mni.3693/1/ ./tmp.mri_nu_correct.mni.3693/nu1.mnc ./tmp.mri_nu_correct.mni.3693/nu2.imp Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Number of iterations: 18 CV of field change: 0.000989408 [fsuser@xubuntu-VirtualBox:/usr/local/freesurfer/subjects/test1/mri/] [2016-06-30 16:30:44] running: /usr/local/freesurfer/mni/bin/make_template -quiet -shrink 3 ./tmp.mri_nu_correct.mni.3693/nu1.mnc ./tmp.mri_nu_correct.mni.3693/1//template.mnc Transforming slices:......................................................................................Done Transforming slices:................................................................................................................................................................................................................................................................Done mri_binarize --i ./tmp.mri_nu_correct.mni.3693/nu2.mnc --min -1 --o ./tmp.mri_nu_correct.mni.3693/ones.mgz $Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $ cwd /usr/local/freesurfer/subjects/test1/mri cmdline mri_binarize --i ./tmp.mri_nu_correct.mni.3693/nu2.mnc --min -1 --o ./tmp.mri_nu_correct.mni.3693/ones.mgz sysname Linux hostname xubuntu-VirtualBox machine i686 user fsuser input ./tmp.mri_nu_correct.mni.3693/nu2.mnc frame 0 nErode3d 0 nErode2d 0 output ./tmp.mri_nu_correct.mni.3693/ones.mgz Binarizing based on threshold min -1 max +infinity binval 1 binvalnot 0 Found 16777216 values in range Counting number of voxels Found 16777216 voxels in final mask mri_binarize done mri_segstats --id 1 --seg ./tmp.mri_nu_correct.mni.3693/ones.mgz --i orig.mgz --sum ./tmp.mri_nu_correct.mni.3693/sum.junk --avgwf ./tmp.mri_nu_correct.mni.3693/input.mean.dat $Id: mri_segstats.c,v 1.75.2.9 2013/02/16 00:09:33 greve Exp $ cwd cmdline mri_segstats --id 1 --seg ./tmp.mri_nu_correct.mni.3693/ones.mgz --i orig.mgz --sum ./tmp.mri_nu_correct.mni.3693/sum.junk --avgwf ./tmp.mri_nu_correct.mni.3693/input.mean.dat sysname Linux hostname xubuntu-VirtualBox machine i686 user fsuser UseRobust 0 Loading ./tmp.mri_nu_correct.mni.3693/ones.mgz Loading orig.mgz Voxel Volume is 1 mm^3 Generating list of segmentation ids Found 1 segmentations Computing statistics for each segmentation 0 1 16777216 16777216.000 Reporting on 1 segmentations Computing spatial average of each frame 0 Writing to ./tmp.mri_nu_correct.mni.3693/input.mean.dat mri_segstats done mri_segstats --id 1 --seg ./tmp.mri_nu_correct.mni.3693/ones.mgz --i ./tmp.mri_nu_correct.mni.3693/nu2.mnc --sum ./tmp.mri_nu_correct.mni.3693/sum.junk --avgwf ./tmp.mri_nu_correct.mni.3693/output.mean.dat $Id: mri_segstats.c,v 1.75.2.9 2013/02/16 00:09:33 greve Exp $ cwd cmdline mri_segstats --id 1 --seg ./tmp.mri_nu_correct.mni.3693/ones.mgz --i ./tmp.mri_nu_correct.mni.3693/nu2.mnc --sum ./tmp.mri_nu_correct.mni.3693/sum.junk --avgwf ./tmp.mri_nu_correct.mni.3693/output.mean.dat sysname Linux hostname xubuntu-VirtualBox machine i686 user fsuser UseRobust 0 Loading ./tmp.mri_nu_correct.mni.3693/ones.mgz Loading ./tmp.mri_nu_correct.mni.3693/nu2.mnc Voxel Volume is 1 mm^3 Generating list of segmentation ids Found 1 segmentations Computing statistics for each segmentation 0 1 16777216 16777216.000 Reporting on 1 segmentations Computing spatial average of each frame 0 Writing to ./tmp.mri_nu_correct.mni.3693/output.mean.dat mri_segstats done mris_calc -o ./tmp.mri_nu_correct.mni.3693/nu2.mnc ./tmp.mri_nu_correct.mni.3693/nu2.mnc mul .97082771882002038830 Saving result to './tmp.mri_nu_correct.mni.3693/nu2.mnc' (type = MINC ) [ ok ] mri_convert ./tmp.mri_nu_correct.mni.3693/nu2.mnc nu.mgz --like orig.mgz mri_convert ./tmp.mri_nu_correct.mni.3693/nu2.mnc nu.mgz --like orig.mgz $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $ reading from ./tmp.mri_nu_correct.mni.3693/nu2.mnc... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 7.45058e-09) j_ras = (7.45058e-09, 0, -1) k_ras = (-1.86265e-09, 1, 0) INFO: transform src into the like-volume: orig.mgz writing to nu.mgz... mri_make_uchar nu.mgz transforms/talairach.xfm nu.mgz type change took 0 minutes and 7 seconds. mapping (29, 172) to ( 3, 110) Thu Jun 30 16:31:21 EDT 2016 mri_nu_correct.mni done mri_add_xform_to_header -c /usr/local/freesurfer/subjects/test1/mri/transforms/talairach.xfm nu.mgz nu.mgz INFO: extension is mgz #-------------------------------------------- #@# Intensity Normalization Thu Jun 30 16:31:22 EDT 2016 /usr/local/freesurfer/subjects/test1/mri mri_normalize -g 1 nu.mgz T1.mgz using max gradient = 1.000 reading from nu.mgz... normalizing image... talairach transform 1.093 -0.010 -0.063 5.827; -0.014 1.129 -0.026 -48.895; 0.106 0.028 1.278 -30.111; 0.000 0.000 0.000 1.000; processing without aseg, no1d=0 MRInormInit(): INFO: Modifying talairach volume c_(r,a,s) based on average_305 MRInormalize(): MRIsplineNormalize(): npeaks = 10 Starting OpenSpline(): npoints = 10 building Voronoi diagram... performing soap bubble smoothing, sigma = 8... Iterating 2 times --------------------------------- 3d normalization pass 1 of 2 white matter peak found at 111 white matter peak found at 109 gm peak at 83 (83), valley at 58 (58) csf peak at 28, setting threshold to 64 building Voronoi diagram... performing soap bubble smoothing, sigma = 8... --------------------------------- 3d normalization pass 2 of 2 white matter peak found at 111 white matter peak found at 110 gm peak at 84 (84), valley at 57 (57) csf peak at 29, setting threshold to 65 building Voronoi diagram... performing soap bubble smoothing, sigma = 8... Done iterating --------------------------------- writing output to T1.mgz 3D bias adjustment took 2 minutes and 26 seconds. #-------------------------------------------- #@# Skull Stripping Thu Jun 30 16:33:48 EDT 2016 /usr/local/freesurfer/subjects/test1/mri mri_em_register -skull nu.mgz /usr/local/freesurfer/average/RB_all_withskull_2008-03-26.gca transforms/talairach_with_skull.lta aligning to atlas containing skull, setting unknown_nbr_spacing = 5 reading 1 input volumes... logging results to talairach_with_skull.log reading '/usr/local/freesurfer/average/RB_all_withskull_2008-03-26.gca'... average std = 23.1 using min determinant for regularization = 53.4 0 singular and 5702 ill-conditioned covariance matrices regularized reading 'nu.mgz'... freeing gibbs priors...done. bounding unknown intensity as < 20.2 or > 943.7 total sample mean = 92.0 (1443 zeros) ************************************************ spacing=8, using 3481 sample points, tol=1.00e-05... ************************************************ register_mri: find_optimal_transform find_optimal_transform: nsamples 3481, passno 0, spacing 8 resetting wm mean[0]: 117 --> 126 resetting gm mean[0]: 74 --> 74 input volume #1 is the most T1-like using real data threshold=24.0 skull bounding box = (52, 48, 34) --> (201, 233, 235) using (102, 110, 135) as brain centroid... mean wm in atlas = 126, using box (84,87,110) --> (120, 132,159) to find MRI wm before smoothing, mri peak at 103 after smoothing, mri peak at 103, scaling input intensities by 1.223 scaling channel 0 by 1.2233 initial log_p = -4.8 ************************************************ First Search limited to translation only. ************************************************ max log p = -4.574532 @ (9.091, -9.091, -9.091) max log p = -4.514342 @ (-4.545, -4.545, -13.636) max log p = -4.410565 @ (-2.273, 2.273, 2.273) max log p = -4.401184 @ (1.136, 1.136, 1.136) max log p = -4.388019 @ (-1.705, -2.841, 0.568) max log p = -4.388019 @ (0.000, 0.000, 0.000) Found translation: (1.7, -13.1, -18.8): log p = -4.388 **************************************** Nine parameter search. iteration 0 nscales = 0 ... **************************************** Result so far: scale 1.000: max_log_p=-4.3, old_max_log_p =-4.4 (thresh=-4.4) 1.055 -0.139 0.000 13.555; 0.161 1.226 0.000 -55.867; 0.000 0.000 1.075 -28.109; 0.000 0.000 0.000 1.000; **************************************** Nine parameter search. iteration 1 nscales = 0 ... **************************************** Result so far: scale 1.000: max_log_p=-4.3, old_max_log_p =-4.3 (thresh=-4.3) 1.055 -0.139 0.000 13.555; 0.161 1.226 0.000 -55.867; 0.000 0.000 1.075 -28.109; 0.000 0.000 0.000 1.000; reducing scale to 0.2500 **************************************** Nine parameter search. iteration 2 nscales = 1 ... **************************************** Result so far: scale 0.250: max_log_p=-4.2, old_max_log_p =-4.3 (thresh=-4.3) 1.019 -0.094 0.033 6.292; 0.120 1.161 -0.034 -39.986; -0.028 0.042 1.014 -20.599; 0.000 0.000 0.000 1.000; **************************************** Nine parameter search. iteration 3 nscales = 1 ... **************************************** Result so far: scale 0.250: max_log_p=-4.2, old_max_log_p =-4.2 (thresh=-4.2) 1.038 -0.095 0.033 4.052; 0.120 1.161 -0.034 -39.986; -0.027 0.041 0.995 -20.100; 0.000 0.000 0.000 1.000; **************************************** Nine parameter search. iteration 4 nscales = 1 ... **************************************** Result so far: scale 0.250: max_log_p=-4.2, old_max_log_p =-4.2 (thresh=-4.2) 1.038 -0.095 0.033 4.052; 0.122 1.182 -0.035 -43.007; -0.027 0.041 0.977 -17.735; 0.000 0.000 0.000 1.000; **************************************** Nine parameter search. iteration 5 nscales = 1 ... **************************************** Result so far: scale 0.250: max_log_p=-4.2, old_max_log_p =-4.2 (thresh=-4.2) 1.038 -0.095 0.033 4.052; 0.122 1.182 -0.035 -43.007; -0.027 0.041 0.977 -17.735; 0.000 0.000 0.000 1.000; reducing scale to 0.0625 **************************************** Nine parameter search. iteration 6 nscales = 2 ... **************************************** Result so far: scale 0.062: max_log_p=-4.2, old_max_log_p =-4.2 (thresh=-4.2) 1.038 -0.076 0.049 -0.453; 0.104 1.186 -0.004 -46.054; -0.047 0.003 0.974 -10.957; 0.000 0.000 0.000 1.000; **************************************** Nine parameter search. iteration 7 nscales = 2 ... **************************************** Result so far: scale 0.062: max_log_p=-4.2, old_max_log_p =-4.2 (thresh=-4.2) 1.038 -0.076 0.049 -0.453; 0.104 1.186 -0.004 -46.054; -0.047 0.003 0.974 -10.957; 0.000 0.000 0.000 1.000; min search scale 0.025000 reached *********************************************** Computing MAP estimate using 3481 samples... *********************************************** dt = 5.00e-06, momentum=0.80, tol=1.00e-05 l_intensity = 1.0000 Aligning input volume to GCA... Transform matrix 1.03835 -0.07591 0.04919 -0.45322; 0.10409 1.18584 -0.00377 -46.05410; -0.04743 0.00343 0.97418 -10.95659; 0.00000 0.00000 0.00000 1.00000; nsamples 3481 Quasinewton: input matrix 1.03835 -0.07591 0.04919 -0.45322; 0.10409 1.18584 -0.00377 -46.05410; -0.04743 0.00343 0.97418 -10.95659; 0.00000 0.00000 0.00000 1.00000; outof QuasiNewtonEMA: 010: -log(p) = -0.0 tol 0.000010 Resulting transform: 1.038 -0.076 0.049 -0.453; 0.104 1.186 -0.004 -46.054; -0.047 0.003 0.974 -10.957; 0.000 0.000 0.000 1.000; pass 1, spacing 8: log(p) = -4.2 (old=-4.8) transform before final EM align: 1.038 -0.076 0.049 -0.453; 0.104 1.186 -0.004 -46.054; -0.047 0.003 0.974 -10.957; 0.000 0.000 0.000 1.000; ************************************************** EM alignment process ... Computing final MAP estimate using 382743 samples. ************************************************** dt = 5.00e-06, momentum=0.80, tol=1.00e-07 l_intensity = 1.0000 Aligning input volume to GCA... Transform matrix 1.03835 -0.07591 0.04919 -0.45322; 0.10409 1.18584 -0.00377 -46.05410; -0.04743 0.00343 0.97418 -10.95659; 0.00000 0.00000 0.00000 1.00000; nsamples 382743 Quasinewton: input matrix 1.03835 -0.07591 0.04919 -0.45322; 0.10409 1.18584 -0.00377 -46.05410; -0.04743 0.00343 0.97418 -10.95659; 0.00000 0.00000 0.00000 1.00000; dfp_em_step_func: 011: -log(p) = 4.6 after pass:transform: ( 1.04, -0.08, 0.05, -0.45) ( 0.10, 1.19, -0.00, -46.05) ( -0.05, 0.00, 0.97, -10.96) dfp_em_step_func: 012: -log(p) = 4.6 after pass:transform: ( 1.04, -0.08, 0.05, -0.45) ( 0.10, 1.19, -0.00, -46.05) ( -0.05, 0.00, 0.97, -10.96) dfp_em_step_func: 013: -log(p) = 4.6 after pass:transform: ( 1.04, -0.08, 0.05, -0.45) ( 0.10, 1.19, -0.00, -46.05) ( -0.05, 0.00, 0.97, -10.96) dfp_em_step_func: 014: -log(p) = 4.6 after pass:transform: ( 1.04, -0.08, 0.05, -0.45) ( 0.10, 1.19, -0.00, -46.05) ( -0.05, 0.00, 0.97, -10.96) dfp_em_step_func: 015: -log(p) = 4.6 after pass:transform: ( 1.04, -0.08, 0.05, -0.45) ( 0.10, 1.19, -0.00, -46.05) ( -0.05, 0.00, 0.97, -10.96) pass 2 through quasi-newton minimization... dfp_em_step_func: 016: -log(p) = 4.6 after pass:transform: ( 1.04, -0.08, 0.05, -0.45) ( 0.10, 1.19, -0.00, -46.05) ( -0.05, 0.00, 0.97, -10.96) dfp_em_step_func: 017: -log(p) = 4.6 after pass:transform: ( 1.04, -0.08, 0.05, -0.45) ( 0.10, 1.19, -0.00, -46.05) ( -0.05, 0.00, 0.97, -10.96) pass 3 through quasi-newton minimization... dfp_em_step_func: 018: -log(p) = 4.6 after pass:transform: ( 1.04, -0.08, 0.05, -0.45) ( 0.10, 1.19, -0.00, -46.05) ( -0.05, 0.00, 0.97, -10.96) dfp_em_step_func: 019: -log(p) = 4.6 after pass:transform: ( 1.04, -0.08, 0.05, -0.45) ( 0.10, 1.19, -0.00, -46.05) ( -0.05, 0.00, 0.97, -10.96) pass 4 through quasi-newton minimization... dfp_em_step_func: 020: -log(p) = 4.6 after pass:transform: ( 1.04, -0.08, 0.05, -0.45) ( 0.10, 1.19, -0.00, -46.05) ( -0.05, 0.00, 0.97, -10.96) dfp_em_step_func: 021: -log(p) = 4.6 after pass:transform: ( 1.04, -0.08, 0.05, -0.45) ( 0.11, 1.19, -0.00, -46.05) ( -0.05, 0.00, 0.98, -10.96) pass 5 through quasi-newton minimization... outof QuasiNewtonEMA: 023: -log(p) = 4.6 tol 0.000000 final transform: 1.039 -0.075 0.050 -0.453; 0.105 1.187 -0.003 -46.054; -0.047 0.004 0.975 -10.957; 0.000 0.000 0.000 1.000; writing output transformation to transforms/talairach_with_skull.lta... registration took 30 minutes and 29 seconds. mri_watershed -T1 -brain_atlas /usr/local/freesurfer/average/RB_all_withskull_2008-03-26.gca transforms/talairach_with_skull.lta T1.mgz brainmask.auto.mgz Mode: T1 normalized volume Mode: Use the information of atlas (default parms, --help for details) ********************************************************* The input file is T1.mgz The output file is brainmask.auto.mgz Weighting the input with atlas information before watershed *************************WATERSHED************************** Sorting... first estimation of the COG coord: x=125 y=123 z=132 r=77 first estimation of the main basin volume: 1938208 voxels Looking for seedpoints 2 found in the cerebellum 16 found in the rest of the brain global maximum in x=146, y=103, z=96, Imax=255 CSF=18, WM_intensity=110, WM_VARIANCE=5 WM_MIN=110, WM_HALF_MIN=110, WM_HALF_MAX=110, WM_MAX=110 preflooding height equal to 10 percent done. Analyze... main basin size=1633335291 voxels, voxel volume =1.000 = 1633335291 mmm3 = 1633335.296 cm3 done. PostAnalyze...Basin Prior 167 basins merged thanks to atlas ***** 0 basin(s) merged in 1 iteration(s) ***** 0 voxel(s) added to the main basin done. Weighting the input with prior template ****************TEMPLATE DEFORMATION**************** second estimation of the COG coord: x=123,y=134, z=124, r=9757 iterations ^^^^^^^^ couldn't find WM with original limits - expanding ^^^^^^ GLOBAL CSF_MIN=1, CSF_intensity=2, CSF_MAX=3 , nb = 43938 RIGHT_CER CSF_MIN=1, CSF_intensity=2, CSF_MAX=3 , nb = -2147481344 LEFT_CER CSF_MIN=1, CSF_intensity=2, CSF_MAX=3 , nb = 3096 RIGHT_BRAIN CSF_MIN=1, CSF_intensity=2, CSF_MAX=3 , nb = -1216649610 LEFT_BRAIN CSF_MIN=1, CSF_intensity=2, CSF_MAX=3 , nb = -1080916408 OTHER CSF_MIN=1, CSF_intensity=2, CSF_MAX=4 , nb = 811501302 CSF_MAX TRANSITION GM_MIN GM GLOBAL before analyzing : 3, 4, 49, 76 after analyzing : 3, 34, 49, 44 RIGHT_CER before analyzing : 3, 5, 58, 80 after analyzing : 3, 40, 58, 50 LEFT_CER before analyzing : 3, 5, 57, 75 after analyzing : 3, 39, 57, 48 RIGHT_BRAIN before analyzing : 3, 4, 49, 77 after analyzing : 3, 34, 49, 44 LEFT_BRAIN before analyzing : 3, 4, 45, 75 after analyzing : 3, 31, 45, 42 OTHER before analyzing : 4, 22, 86, 93 after analyzing : 4, 64, 86, 71 mri_strip_skull: done peeling brain highly tesselated surface with 10242 vertices matching...69 iterations *********************VALIDATION********************* curvature mean = -0.013, std = 0.011 curvature mean = 71.779, std = 7.112 No Rigid alignment: -atlas Mode Off (basic atlas / no registration) before rotation: sse = 7.19, sigma = 11.63 after rotation: sse = 7.19, sigma = 11.63 Localization of inacurate regions: Erosion-Dilation steps the sse mean is 8.18, its var is 12.48 before Erosion-Dilatation 4.86% of inacurate vertices after Erosion-Dilatation 8.47% of inacurate vertices Validation of the shape of the surface done. Scaling of atlas fields onto current surface fields ********FINAL ITERATIVE TEMPLATE DEFORMATION******** Compute Local values csf/gray Fine Segmentation...44 iterations mri_strip_skull: done peeling brain Brain Size = 1739899 voxels, voxel volume = 1.000 mm3 = 1739899 mmm3 = 1739.899 cm3 ****************************** Saving brainmask.auto.mgz done cp brainmask.auto.mgz brainmask.mgz #------------------------------------------ Started at Thu Jun 30 16:28:08 EDT 2016 Ended at Thu Jun 30 17:04:40 EDT 2016 #@#%# recon-all-run-time-hours 0.609 recon-all -s test1 finished without error at Thu Jun 30 17:04:40 EDT 2016 New invocation of recon-all Thu Jun 30 17:27:54 EDT 2016 /usr/local/freesurfer/subjects/test1 /usr/local/freesurfer/bin/recon-all -subcortseg -subjid test1 subjid test1 setenv SUBJECTS_DIR /usr/local/freesurfer/subjects FREESURFER_HOME /usr/local/freesurfer Actual FREESURFER_HOME /usr/local/freesurfer build-stamp.txt: freesurfer-Linux-centos4-stable-pub-v5.3.0 Linux xubuntu-VirtualBox 3.2.0-23-generic #36-Ubuntu SMP Tue Apr 10 20:41:14 UTC 2012 i686 i686 i386 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 5875 maxlocks unlimited maxsignal 5875 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buffers cached Mem: 766528 426604 339924 0 6856 194472 -/+ buffers/cache: 225276 541252 Swap: 1944572 54932 1889640 ######################################## program versions used $Id: recon-all,v 1.379.2.73 2013/05/12 23:15:37 nicks Exp $ $Id: mri_motion_correct.fsl,v 1.14 2011/03/02 20:16:39 nicks Exp $ mri_convert -all-info ProgramName: mri_convert ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/06/30-21:27:54-GMT BuildTimeStamp: May 13 2013 18:53:32 CVS: $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $ User: fsuser Machine: xubuntu-VirtualBox Platform: Linux PlatformVersion: 3.2.0-23-generic CompilerName: GCC CompilerVersion: 30400 FLIRT version 5.5 $Id: talairach_avi,v 1.9 2011/03/02 18:38:06 nicks Exp $ mri_convert --version stable5 ProgramName: tkregister2_cmdl ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/06/30-21:27:54-GMT BuildTimeStamp: May 13 2013 18:53:32 CVS: $Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $ User: fsuser Machine: xubuntu-VirtualBox Platform: Linux PlatformVersion: 3.2.0-23-generic CompilerName: GCC CompilerVersion: 30400 Program nu_correct, built from: Package MNI N3, version 1.10, compiled by nicks@fishie (i686-pc-linux-gnu) on 2010-02-20 at 20:19:13 ProgramName: mri_make_uchar ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/06/30-21:27:55-GMT BuildTimeStamp: May 13 2013 18:53:32 CVS: $Id: mri_make_uchar.c,v 1.4 2011/03/02 00:04:14 nicks Exp $ User: fsuser Machine: xubuntu-VirtualBox Platform: Linux PlatformVersion: 3.2.0-23-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: mri_normalize ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/06/30-21:27:55-GMT BuildTimeStamp: May 13 2013 18:53:32 CVS: $Id: mri_normalize.c,v 1.73.2.1 2012/10/17 19:11:32 nicks Exp $ User: fsuser Machine: xubuntu-VirtualBox Platform: Linux PlatformVersion: 3.2.0-23-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: mri_watershed ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/06/30-21:27:55-GMT BuildTimeStamp: May 13 2013 18:53:32 CVS: $Id: mri_watershed.cpp,v 1.96.2.1 2011/11/08 22:18:44 nicks Exp $ User: fsuser Machine: xubuntu-VirtualBox Platform: Linux PlatformVersion: 3.2.0-23-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: mri_gcut ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/06/30-21:27:55-GMT BuildTimeStamp: May 13 2013 18:53:32 CVS: $Id: mri_gcut.cpp,v 1.14 2011/03/02 00:04:16 nicks Exp $ User: fsuser Machine: xubuntu-VirtualBox Platform: Linux PlatformVersion: 3.2.0-23-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: mri_segment ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/06/30-21:27:55-GMT BuildTimeStamp: May 13 2013 18:53:32 CVS: $Id: mri_segment.c,v 1.40 2011/03/02 00:04:24 nicks Exp $ User: fsuser Machine: xubuntu-VirtualBox Platform: Linux PlatformVersion: 3.2.0-23-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: mri_label2label ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/06/30-21:27:55-GMT BuildTimeStamp: May 13 2013 18:53:32 CVS: $Id: mri_label2label.c,v 1.40.2.2 2013/04/02 16:26:15 greve Exp $ User: fsuser Machine: xubuntu-VirtualBox Platform: Linux PlatformVersion: 3.2.0-23-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: mri_em_register ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/06/30-21:27:55-GMT BuildTimeStamp: May 13 2013 18:53:32 CVS: $Id: mri_em_register.c,v 1.84.2.3 2013/02/09 00:49:26 nicks Exp $ User: fsuser Machine: xubuntu-VirtualBox Platform: Linux PlatformVersion: 3.2.0-23-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: mri_ca_normalize ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/06/30-21:27:55-GMT BuildTimeStamp: May 13 2013 18:53:32 CVS: $Id: mri_ca_normalize.c,v 1.52.2.2 2012/10/17 19:11:32 nicks Exp $ User: fsuser Machine: xubuntu-VirtualBox Platform: Linux PlatformVersion: 3.2.0-23-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: mri_ca_register ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/06/30-21:27:55-GMT BuildTimeStamp: May 13 2013 18:53:32 CVS: $Id: mri_ca_register.c,v 1.78.2.3 2013/02/09 00:42:20 nicks Exp $ User: fsuser Machine: xubuntu-VirtualBox Platform: Linux PlatformVersion: 3.2.0-23-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: mri_ca_label ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/06/30-21:27:55-GMT BuildTimeStamp: May 13 2013 18:53:32 CVS: $Id: mri_ca_label.c,v 1.96.2.1 2012/08/28 22:11:20 nicks Exp $ User: fsuser Machine: xubuntu-VirtualBox Platform: Linux PlatformVersion: 3.2.0-23-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: mri_pretess ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/06/30-21:27:55-GMT BuildTimeStamp: May 13 2013 18:53:32 CVS: $Id: mri_pretess.c,v 1.20 2011/03/02 00:04:23 nicks Exp $ User: fsuser Machine: xubuntu-VirtualBox Platform: Linux PlatformVersion: 3.2.0-23-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: mri_fill ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/06/30-21:27:55-GMT BuildTimeStamp: May 13 2013 18:53:32 CVS: $Id: mri_fill.c,v 1.118 2011/03/16 21:23:49 nicks Exp $ User: fsuser Machine: xubuntu-VirtualBox Platform: Linux PlatformVersion: 3.2.0-23-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: mri_tessellate ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/06/30-21:27:55-GMT BuildTimeStamp: May 13 2013 18:53:32 CVS: $Id: mri_tessellate.c,v 1.36 2011/03/02 00:04:25 nicks Exp $ User: fsuser Machine: xubuntu-VirtualBox Platform: Linux PlatformVersion: 3.2.0-23-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: mri_concatenate_lta ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/06/30-21:27:55-GMT BuildTimeStamp: May 13 2013 18:53:32 CVS: $Id: mri_concatenate_lta.c,v 1.10 2011/03/16 21:23:48 nicks Exp $ User: fsuser Machine: xubuntu-VirtualBox Platform: Linux PlatformVersion: 3.2.0-23-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: mri_normalize_tp2 ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/06/30-21:27:55-GMT BuildTimeStamp: May 13 2013 18:53:32 CVS: $Id: mri_normalize_tp2.c,v 1.8 2011/03/02 00:04:23 nicks Exp $ User: fsuser Machine: xubuntu-VirtualBox Platform: Linux PlatformVersion: 3.2.0-23-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: mris_smooth ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/06/30-21:27:55-GMT BuildTimeStamp: May 13 2013 18:53:32 CVS: $Id: mris_smooth.c,v 1.28 2011/03/02 00:04:34 nicks Exp $ User: fsuser Machine: xubuntu-VirtualBox Platform: Linux PlatformVersion: 3.2.0-23-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: mris_inflate ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/06/30-21:27:55-GMT BuildTimeStamp: May 13 2013 18:53:32 CVS: $Id: mris_inflate.c,v 1.43 2011/03/02 00:04:32 nicks Exp $ User: fsuser Machine: xubuntu-VirtualBox Platform: Linux PlatformVersion: 3.2.0-23-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: mris_curvature ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/06/30-21:27:55-GMT BuildTimeStamp: May 13 2013 18:53:32 CVS: $Id: mris_curvature.c,v 1.31 2011/03/02 00:04:30 nicks Exp $ User: fsuser Machine: xubuntu-VirtualBox Platform: Linux PlatformVersion: 3.2.0-23-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: mris_sphere ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/06/30-21:27:55-GMT BuildTimeStamp: May 13 2013 18:53:32 CVS: $Id: mris_sphere.c,v 1.57 2011/03/02 00:04:34 nicks Exp $ User: fsuser Machine: xubuntu-VirtualBox Platform: Linux PlatformVersion: 3.2.0-23-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: mris_fix_topology ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/06/30-21:27:55-GMT BuildTimeStamp: May 13 2013 18:53:32 CVS: $Id: mris_fix_topology.c,v 1.48 2011/03/02 00:04:32 nicks Exp $ User: fsuser Machine: xubuntu-VirtualBox Platform: Linux PlatformVersion: 3.2.0-23-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: mris_topo_fixer ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/06/30-21:27:55-GMT BuildTimeStamp: May 13 2013 18:53:32 CVS: $Id: mris_topo_fixer.cpp,v 1.29 2011/03/02 00:04:34 nicks Exp $ User: fsuser Machine: xubuntu-VirtualBox Platform: Linux PlatformVersion: 3.2.0-23-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: mris_ca_label ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/06/30-21:27:56-GMT BuildTimeStamp: May 13 2013 18:53:32 CVS: $Id: mris_ca_label.c,v 1.35 2011/03/02 00:04:27 nicks Exp $ User: fsuser Machine: xubuntu-VirtualBox Platform: Linux PlatformVersion: 3.2.0-23-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: mris_euler_number ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/06/30-21:27:56-GMT BuildTimeStamp: May 13 2013 18:53:32 CVS: $Id: mris_euler_number.c,v 1.8.2.2 2013/01/14 22:40:07 greve Exp $ User: fsuser Machine: xubuntu-VirtualBox Platform: Linux PlatformVersion: 3.2.0-23-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: mris_make_surfaces ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/06/30-21:27:56-GMT BuildTimeStamp: May 13 2013 18:53:32 CVS: $Id: mris_make_surfaces.c,v 1.127.2.6 2013/05/12 22:28:01 nicks Exp $ User: fsuser Machine: xubuntu-VirtualBox Platform: Linux PlatformVersion: 3.2.0-23-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: mris_register ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/06/30-21:27:56-GMT BuildTimeStamp: May 13 2013 18:53:32 CVS: $Id: mris_register.c,v 1.59 2011/03/02 00:04:33 nicks Exp $ User: fsuser Machine: xubuntu-VirtualBox Platform: Linux PlatformVersion: 3.2.0-23-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: mris_volmask ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/06/30-21:27:56-GMT BuildTimeStamp: May 13 2013 18:53:32 CVS: $Id: mris_volmask.cpp,v 1.25 2011/03/02 00:04:34 nicks Exp $ User: fsuser Machine: xubuntu-VirtualBox Platform: Linux PlatformVersion: 3.2.0-23-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: mris_anatomical_stats ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/06/30-21:27:56-GMT BuildTimeStamp: May 13 2013 18:53:32 CVS: $Id: mris_anatomical_stats.c,v 1.72 2011/03/02 00:04:26 nicks Exp $ User: fsuser Machine: xubuntu-VirtualBox Platform: Linux PlatformVersion: 3.2.0-23-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: mrisp_paint ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/06/30-21:27:56-GMT BuildTimeStamp: May 13 2013 18:53:32 CVS: $Id: mrisp_paint.c,v 1.11 2011/03/02 00:04:35 nicks Exp $ User: fsuser Machine: xubuntu-VirtualBox Platform: Linux PlatformVersion: 3.2.0-23-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: mris_curvature_stats ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/06/30-21:27:56-GMT BuildTimeStamp: May 13 2013 18:53:32 CVS: $Id: mris_curvature_stats.c,v 1.64 2011/03/02 00:04:30 nicks Exp $ User: fsuser Machine: xubuntu-VirtualBox Platform: Linux PlatformVersion: 3.2.0-23-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: mris_calc ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/06/30-21:27:56-GMT BuildTimeStamp: May 13 2013 18:53:32 CVS: $Id: mris_calc.c,v 1.37.2.8 2013/01/28 17:05:17 greve Exp $ User: fsuser Machine: xubuntu-VirtualBox Platform: Linux PlatformVersion: 3.2.0-23-generic CompilerName: GCC CompilerVersion: 30400 $Id: mri_robust_register.cpp,v 1.52.2.3 2012/11/20 17:26:47 mreuter Exp $ ProgramName: mri_robust_register ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/06/30-21:27:56-GMT BuildTimeStamp: May 13 2013 18:53:32 CVS: $Id: mri_robust_register.cpp,v 1.52.2.3 2012/11/20 17:26:47 mreuter Exp $ User: fsuser Machine: xubuntu-VirtualBox Platform: Linux PlatformVersion: 3.2.0-23-generic CompilerName: GCC CompilerVersion: 30400 $Id: mri_robust_template.cpp,v 1.37.2.2 2012/10/10 19:59:06 mreuter Exp $ ProgramName: mri_robust_template ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/06/30-21:27:56-GMT BuildTimeStamp: May 13 2013 18:53:32 CVS: $Id: mri_robust_template.cpp,v 1.37.2.2 2012/10/10 19:59:06 mreuter Exp $ User: fsuser Machine: xubuntu-VirtualBox Platform: Linux PlatformVersion: 3.2.0-23-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: mri_and ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/06/30-21:27:56-GMT BuildTimeStamp: May 13 2013 18:53:32 CVS: $Id: mri_and.c,v 1.4 2011/03/02 00:04:13 nicks Exp $ User: fsuser Machine: xubuntu-VirtualBox Platform: Linux PlatformVersion: 3.2.0-23-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: mri_or ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/06/30-21:27:56-GMT BuildTimeStamp: May 13 2013 18:53:32 CVS: $Id: mri_or.c,v 1.3 2011/03/02 00:04:13 nicks Exp $ User: fsuser Machine: xubuntu-VirtualBox Platform: Linux PlatformVersion: 3.2.0-23-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: mri_fuse_segmentations ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/06/30-21:27:56-GMT BuildTimeStamp: May 13 2013 18:53:32 CVS: $Id: mri_fuse_segmentations.c,v 1.8 2011/03/02 00:04:15 nicks Exp $ User: fsuser Machine: xubuntu-VirtualBox Platform: Linux PlatformVersion: 3.2.0-23-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: mri_segstats ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/06/30-21:27:56-GMT BuildTimeStamp: May 13 2013 18:53:32 CVS: $Id: mri_segstats.c,v 1.75.2.9 2013/02/16 00:09:33 greve Exp $ User: fsuser Machine: xubuntu-VirtualBox Platform: Linux PlatformVersion: 3.2.0-23-generic CompilerName: GCC CompilerVersion: 30400 ####################################### GCADIR /usr/local/freesurfer/average GCA RB_all_2008-03-26.gca GCASkull RB_all_withskull_2008-03-26.gca AvgCurvTif average.curvature.filled.buckner40.tif GCSDIR /usr/local/freesurfer/average GCS curvature.buckner40.filled.desikan_killiany.2010-03-25.gcs ####################################### #------------------------------------- #@# EM Registration Thu Jun 30 17:27:56 EDT 2016 /usr/local/freesurfer/subjects/test1/mri mri_em_register -uns 3 -mask brainmask.mgz nu.mgz /usr/local/freesurfer/average/RB_all_2008-03-26.gca transforms/talairach.lta aligning to atlas containing skull, setting unknown_nbr_spacing = 3 using MR volume brainmask.mgz to mask input volume... reading 1 input volumes... logging results to talairach.log reading '/usr/local/freesurfer/average/RB_all_2008-03-26.gca'... average std = 6.9 using min determinant for regularization = 4.7 0 singular and 1812 ill-conditioned covariance matrices regularized reading 'nu.mgz'... freeing gibbs priors...done. bounding unknown intensity as < 14.9 or > 790.2 total sample mean = 84.4 (994 zeros) ************************************************ spacing=8, using 2772 sample points, tol=1.00e-05... ************************************************ register_mri: find_optimal_transform find_optimal_transform: nsamples 2772, passno 0, spacing 8 resetting wm mean[0]: 102 --> 107 resetting gm mean[0]: 64 --> 64 input volume #1 is the most T1-like using real data threshold=26.0 skull bounding box = (58, 70, 47) --> (192, 211, 213) using (103, 117, 130) as brain centroid... mean wm in atlas = 107, using box (87,100,110) --> (119, 134,150) to find MRI wm before smoothing, mri peak at 104 after smoothing, mri peak at 104, scaling input intensities by 1.029 scaling channel 0 by 1.02885 initial log_p = -4.3 ************************************************ First Search limited to translation only. ************************************************ max log p = -4.172815 @ (-9.091, -9.091, -9.091) max log p = -4.007531 @ (4.545, -4.545, -4.545) max log p = -3.826370 @ (6.818, 2.273, -2.273) max log p = -3.807444 @ (1.136, 1.136, -1.136) max log p = -3.807444 @ (0.000, 0.000, 0.000) max log p = -3.803349 @ (-3.125, -1.989, -0.284) Found translation: (0.3, -12.2, -17.3): log p = -3.803 **************************************** Nine parameter search. iteration 0 nscales = 0 ... **************************************** Result so far: scale 1.000: max_log_p=-3.6, old_max_log_p =-3.8 (thresh=-3.8) 0.991 -0.149 0.017 18.784; 0.140 1.215 -0.139 -33.613; 0.000 0.150 0.991 -35.956; 0.000 0.000 0.000 1.000; **************************************** Nine parameter search. iteration 1 nscales = 0 ... **************************************** Result so far: scale 1.000: max_log_p=-3.6, old_max_log_p =-3.6 (thresh=-3.6) 0.991 -0.149 0.017 18.784; 0.140 1.215 -0.139 -33.613; 0.000 0.150 0.991 -35.956; 0.000 0.000 0.000 1.000; reducing scale to 0.2500 **************************************** Nine parameter search. iteration 2 nscales = 1 ... **************************************** Result so far: scale 0.250: max_log_p=-3.5, old_max_log_p =-3.6 (thresh=-3.6) 1.036 -0.071 0.017 3.464; 0.070 1.163 -0.041 -34.050; -0.016 0.029 1.000 -20.011; 0.000 0.000 0.000 1.000; **************************************** Nine parameter search. iteration 3 nscales = 1 ... **************************************** Result so far: scale 0.250: max_log_p=-3.5, old_max_log_p =-3.5 (thresh=-3.5) 1.016 -0.070 0.017 5.777; 0.073 1.180 -0.109 -26.357; -0.011 0.105 0.995 -29.744; 0.000 0.000 0.000 1.000; reducing scale to 0.0625 **************************************** Nine parameter search. iteration 4 nscales = 2 ... **************************************** Result so far: scale 0.062: max_log_p=-3.5, old_max_log_p =-3.5 (thresh=-3.5) 1.018 -0.070 0.017 6.104; 0.073 1.181 -0.109 -26.527; -0.011 0.105 0.997 -29.902; 0.000 0.000 0.000 1.000; **************************************** Nine parameter search. iteration 5 nscales = 2 ... **************************************** Result so far: scale 0.062: max_log_p=-3.5, old_max_log_p =-3.5 (thresh=-3.5) 1.019 -0.070 0.017 5.963; 0.073 1.181 -0.109 -26.527; -0.011 0.105 0.997 -29.902; 0.000 0.000 0.000 1.000; min search scale 0.025000 reached *********************************************** Computing MAP estimate using 2772 samples... *********************************************** dt = 5.00e-06, momentum=0.80, tol=1.00e-05 l_intensity = 1.0000 Aligning input volume to GCA... Transform matrix 1.01882 -0.06982 0.01678 5.96254; 0.07273 1.18150 -0.10867 -26.52695; -0.01135 0.10511 0.99661 -29.90190; 0.00000 0.00000 0.00000 1.00000; nsamples 2772 Quasinewton: input matrix 1.01882 -0.06982 0.01678 5.96254; 0.07273 1.18150 -0.10867 -26.52695; -0.01135 0.10511 0.99661 -29.90190; 0.00000 0.00000 0.00000 1.00000; outof QuasiNewtonEMA: 008: -log(p) = -0.0 tol 0.000010 Resulting transform: 1.019 -0.070 0.017 5.963; 0.073 1.181 -0.109 -26.527; -0.011 0.105 0.997 -29.902; 0.000 0.000 0.000 1.000; pass 1, spacing 8: log(p) = -3.5 (old=-4.3) transform before final EM align: 1.019 -0.070 0.017 5.963; 0.073 1.181 -0.109 -26.527; -0.011 0.105 0.997 -29.902; 0.000 0.000 0.000 1.000; ************************************************** EM alignment process ... Computing final MAP estimate using 312841 samples. ************************************************** dt = 5.00e-06, momentum=0.80, tol=1.00e-07 l_intensity = 1.0000 Aligning input volume to GCA... Transform matrix 1.01882 -0.06982 0.01678 5.96254; 0.07273 1.18150 -0.10867 -26.52695; -0.01135 0.10511 0.99661 -29.90190; 0.00000 0.00000 0.00000 1.00000; nsamples 312841 Quasinewton: input matrix 1.01882 -0.06982 0.01678 5.96254; 0.07273 1.18150 -0.10867 -26.52695; -0.01135 0.10511 0.99661 -29.90190; 0.00000 0.00000 0.00000 1.00000; outof QuasiNewtonEMA: 010: -log(p) = 3.9 tol 0.000000 final transform: 1.019 -0.070 0.017 5.963; 0.073 1.181 -0.109 -26.527; -0.011 0.105 0.997 -29.902; 0.000 0.000 0.000 1.000; writing output transformation to transforms/talairach.lta... registration took 17 minutes and 38 seconds. #-------------------------------------- #@# CA Normalize Thu Jun 30 17:45:35 EDT 2016 /usr/local/freesurfer/subjects/test1/mri mri_ca_normalize -c ctrl_pts.mgz -mask brainmask.mgz nu.mgz /usr/local/freesurfer/average/RB_all_2008-03-26.gca transforms/talairach.lta norm.mgz writing control point volume to ctrl_pts.mgz using MR volume brainmask.mgz to mask input volume... reading 1 input volume reading atlas from '/usr/local/freesurfer/average/RB_all_2008-03-26.gca'... reading transform from 'transforms/talairach.lta'... reading input volume from nu.mgz... resetting wm mean[0]: 102 --> 107 resetting gm mean[0]: 64 --> 64 input volume #1 is the most T1-like using real data threshold=26.0 skull bounding box = (58, 70, 47) --> (192, 211, 213) using (103, 117, 130) as brain centroid... mean wm in atlas = 107, using box (87,100,110) --> (119, 134,150) to find MRI wm before smoothing, mri peak at 104 after smoothing, mri peak at 104, scaling input intensities by 1.029 scaling channel 0 by 1.02885 using 244171 sample points... INFO: compute sample coordinates transform 1.019 -0.070 0.017 5.963; 0.073 1.181 -0.109 -26.527; -0.011 0.105 0.997 -29.902; 0.000 0.000 0.000 1.000; INFO: transform used finding control points in Left_Cerebral_White_Matter.... found 41584 control points for structure... bounding box (124, 68, 43) --> (190, 170, 212) Left_Cerebral_White_Matter: limiting intensities to 97.0 --> 212.0 0 of 2729 (0.0%) samples deleted finding control points in Right_Cerebral_White_Matter.... found 40735 control points for structure... bounding box (60, 70, 44) --> (125, 174, 212) Right_Cerebral_White_Matter: limiting intensities to 97.0 --> 212.0 3 of 3091 (0.1%) samples deleted finding control points in Left_Cerebellum_White_Matter.... found 3012 control points for structure... bounding box (128, 136, 63) --> (177, 173, 118) Left_Cerebellum_White_Matter: limiting intensities to 91.0 --> 212.0 0 of 157 (0.0%) samples deleted finding control points in Right_Cerebellum_White_Matter.... found 2764 control points for structure... bounding box (83, 137, 60) --> (127, 176, 117) Right_Cerebellum_White_Matter: limiting intensities to 89.0 --> 212.0 0 of 107 (0.0%) samples deleted finding control points in Brain_Stem.... found 3520 control points for structure... bounding box (110, 135, 94) --> (143, 192, 129) Brain_Stem: limiting intensities to 88.0 --> 212.0 0 of 226 (0.0%) samples deleted using 6310 total control points for intensity normalization... bias field = 0.991 +- 0.052 4 of 6307 control points discarded finding control points in Left_Cerebral_White_Matter.... found 41584 control points for structure... bounding box (124, 68, 43) --> (190, 170, 212) Left_Cerebral_White_Matter: limiting intensities to 92.0 --> 216.0 0 of 3240 (0.0%) samples deleted finding control points in Right_Cerebral_White_Matter.... found 40735 control points for structure... bounding box (60, 70, 44) --> (125, 174, 212) Right_Cerebral_White_Matter: limiting intensities to 95.0 --> 216.0 4 of 3467 (0.1%) samples deleted finding control points in Left_Cerebellum_White_Matter.... found 3012 control points for structure... bounding box (128, 136, 63) --> (177, 173, 118) Left_Cerebellum_White_Matter: limiting intensities to 81.0 --> 216.0 3 of 144 (2.1%) samples deleted finding control points in Right_Cerebellum_White_Matter.... found 2764 control points for structure... bounding box (83, 137, 60) --> (127, 176, 117) Right_Cerebellum_White_Matter: limiting intensities to 78.0 --> 216.0 0 of 133 (0.0%) samples deleted finding control points in Brain_Stem.... found 3520 control points for structure... bounding box (110, 135, 94) --> (143, 192, 129) Brain_Stem: limiting intensities to 79.0 --> 216.0 0 of 237 (0.0%) samples deleted using 7221 total control points for intensity normalization... bias field = 1.014 +- 0.037 7 of 7214 control points discarded finding control points in Left_Cerebral_White_Matter.... found 41584 control points for structure... bounding box (124, 68, 43) --> (190, 170, 212) Left_Cerebral_White_Matter: limiting intensities to 93.0 --> 219.0 2 of 3395 (0.1%) samples deleted finding control points in Right_Cerebral_White_Matter.... found 40735 control points for structure... bounding box (60, 70, 44) --> (125, 174, 212) Right_Cerebral_White_Matter: limiting intensities to 94.0 --> 219.0 9 of 3509 (0.3%) samples deleted finding control points in Left_Cerebellum_White_Matter.... found 3012 control points for structure... bounding box (128, 136, 63) --> (177, 173, 118) Left_Cerebellum_White_Matter: limiting intensities to 76.0 --> 219.0 0 of 172 (0.0%) samples deleted finding control points in Right_Cerebellum_White_Matter.... found 2764 control points for structure... bounding box (83, 137, 60) --> (127, 176, 117) Right_Cerebellum_White_Matter: limiting intensities to 75.0 --> 219.0 0 of 177 (0.0%) samples deleted finding control points in Brain_Stem.... found 3520 control points for structure... bounding box (110, 135, 94) --> (143, 192, 129) Brain_Stem: limiting intensities to 78.0 --> 219.0 18 of 287 (6.3%) samples deleted using 7540 total control points for intensity normalization... bias field = 1.009 +- 0.034 16 of 7511 control points discarded writing normalized volume to norm.mgz... writing control points to ctrl_pts.mgz freeing GCA...done. normalization took 1 minutes and 45 seconds. #-------------------------------------- #@# CA Reg Thu Jun 30 17:47:20 EDT 2016 /usr/local/freesurfer/subjects/test1/mri mri_ca_register -nobigventricles -T transforms/talairach.lta -align-after -mask brainmask.mgz norm.mgz /usr/local/freesurfer/average/RB_all_2008-03-26.gca transforms/talairach.m3z not handling expanded ventricles... using previously computed transform transforms/talairach.lta renormalizing sequences with structure alignment, equivalent to: -renormalize -regularize_mean 0.500 -regularize 0.500 using MR volume brainmask.mgz to mask input volume... reading 1 input volumes... logging results to talairach.log reading input volume 'norm.mgz'... reading GCA '/usr/local/freesurfer/average/RB_all_2008-03-26.gca'... label assignment complete, 0 changed (0.00%) det(m_affine) = 1.22 (predicted orig area = 6.6) label assignment complete, 0 changed (0.00%) freeing gibbs priors...done. average std[0] = 5.0 **************** pass 1 of 1 ************************ setting smoothness coefficient to 0.039 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.889, neg=0, invalid=96777 0001: dt=129.472000, rms=0.832 (6.410%), neg=0, invalid=96777 0002: dt=129.472000, rms=0.823 (1.122%), neg=0, invalid=96777 0003: dt=369.920000, rms=0.808 (1.838%), neg=0, invalid=96777 0004: dt=32.368000, rms=0.807 (0.067%), neg=0, invalid=96777 0005: dt=32.368000, rms=0.807 (0.053%), neg=0, invalid=96777 0006: dt=32.368000, rms=0.807 (0.012%), neg=0, invalid=96777 0007: dt=32.368000, rms=0.807 (0.002%), neg=0, invalid=96777 0008: dt=517.888000, rms=0.799 (0.933%), neg=0, invalid=96777 0009: dt=32.368000, rms=0.798 (0.135%), neg=0, invalid=96777 0010: dt=32.368000, rms=0.798 (0.031%), neg=0, invalid=96777 0011: dt=32.368000, rms=0.798 (-0.068%), neg=0, invalid=96777 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.798, neg=0, invalid=96777 0012: dt=129.472000, rms=0.794 (0.430%), neg=0, invalid=96777 0013: dt=517.888000, rms=0.788 (0.828%), neg=0, invalid=96777 0014: dt=23.120000, rms=0.788 (0.002%), neg=0, invalid=96777 0015: dt=23.120000, rms=0.788 (-0.001%), neg=0, invalid=96777 setting smoothness coefficient to 0.154 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.789, neg=0, invalid=96777 0016: dt=36.288000, rms=0.784 (0.673%), neg=0, invalid=96777 0017: dt=103.680000, rms=0.773 (1.348%), neg=0, invalid=96777 0018: dt=36.288000, rms=0.767 (0.828%), neg=0, invalid=96777 0019: dt=145.152000, rms=0.753 (1.727%), neg=0, invalid=96777 0020: dt=31.104000, rms=0.748 (0.758%), neg=0, invalid=96777 0021: dt=82.944000, rms=0.744 (0.547%), neg=0, invalid=96777 0022: dt=36.288000, rms=0.740 (0.519%), neg=0, invalid=96777 0023: dt=31.104000, rms=0.738 (0.232%), neg=0, invalid=96777 0024: dt=31.104000, rms=0.736 (0.258%), neg=0, invalid=96777 0025: dt=31.104000, rms=0.733 (0.369%), neg=0, invalid=96777 0026: dt=31.104000, rms=0.730 (0.492%), neg=0, invalid=96777 0027: dt=31.104000, rms=0.726 (0.528%), neg=0, invalid=96777 0028: dt=31.104000, rms=0.722 (0.590%), neg=0, invalid=96777 0029: dt=31.104000, rms=0.717 (0.594%), neg=0, invalid=96777 0030: dt=31.104000, rms=0.714 (0.523%), neg=0, invalid=96777 0031: dt=31.104000, rms=0.710 (0.512%), neg=0, invalid=96777 0032: dt=31.104000, rms=0.707 (0.469%), neg=0, invalid=96777 0033: dt=31.104000, rms=0.703 (0.462%), neg=0, invalid=96777 0034: dt=31.104000, rms=0.701 (0.345%), neg=0, invalid=96777 0035: dt=31.104000, rms=0.699 (0.264%), neg=0, invalid=96777 0036: dt=31.104000, rms=0.698 (0.169%), neg=0, invalid=96777 0037: dt=31.104000, rms=0.697 (0.118%), neg=0, invalid=96777 0038: dt=31.104000, rms=0.696 (0.150%), neg=0, invalid=96777 0039: dt=31.104000, rms=0.695 (0.173%), neg=0, invalid=96777 0040: dt=31.104000, rms=0.694 (0.171%), neg=0, invalid=96777 0041: dt=31.104000, rms=0.693 (0.124%), neg=0, invalid=96777 0042: dt=31.104000, rms=0.692 (0.088%), neg=0, invalid=96777 0043: dt=103.680000, rms=0.691 (0.160%), neg=0, invalid=96777 0044: dt=15.552000, rms=0.691 (0.025%), neg=0, invalid=96777 0045: dt=15.552000, rms=0.691 (0.015%), neg=0, invalid=96777 0046: dt=15.552000, rms=0.691 (0.007%), neg=0, invalid=96777 0047: dt=15.552000, rms=0.691 (0.017%), neg=0, invalid=96777 0048: dt=15.552000, rms=0.690 (0.054%), neg=0, invalid=96777 0049: dt=15.552000, rms=0.690 (0.056%), neg=0, invalid=96777 0050: dt=15.552000, rms=0.690 (0.030%), neg=0, invalid=96777 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.690, neg=0, invalid=96777 0051: dt=31.104000, rms=0.688 (0.224%), neg=0, invalid=96777 0052: dt=62.208000, rms=0.687 (0.114%), neg=0, invalid=96777 0053: dt=62.208000, rms=0.687 (0.044%), neg=0, invalid=96777 0054: dt=62.208000, rms=0.686 (0.101%), neg=0, invalid=96777 0055: dt=62.208000, rms=0.686 (0.069%), neg=0, invalid=96777 0056: dt=62.208000, rms=0.685 (0.102%), neg=0, invalid=96777 0057: dt=62.208000, rms=0.684 (0.100%), neg=0, invalid=96777 setting smoothness coefficient to 0.588 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.712, neg=0, invalid=96777 0058: dt=8.260870, rms=0.710 (0.210%), neg=0, invalid=96777 0059: dt=4.800000, rms=0.710 (0.027%), neg=0, invalid=96777 0060: dt=4.800000, rms=0.710 (0.007%), neg=0, invalid=96777 0061: dt=4.800000, rms=0.710 (-0.048%), neg=0, invalid=96777 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.710, neg=0, invalid=96777 0062: dt=0.000000, rms=0.710 (0.000%), neg=0, invalid=96777 setting smoothness coefficient to 2.000 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.778, neg=0, invalid=96777 0063: dt=5.905085, rms=0.758 (2.555%), neg=0, invalid=96777 0064: dt=5.076923, rms=0.755 (0.347%), neg=0, invalid=96777 0065: dt=1.728000, rms=0.755 (0.016%), neg=0, invalid=96777 0066: dt=1.728000, rms=0.755 (0.012%), neg=0, invalid=96777 0067: dt=1.728000, rms=0.755 (-0.010%), neg=0, invalid=96777 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.755, neg=0, invalid=96777 0068: dt=0.000000, rms=0.755 (0.000%), neg=0, invalid=96777 setting smoothness coefficient to 5.000 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.806, neg=0, invalid=96777 0069: dt=0.000000, rms=0.806 (0.000%), neg=0, invalid=96777 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.806, neg=0, invalid=96777 0070: dt=0.112000, rms=0.806 (0.009%), neg=0, invalid=96777 0071: dt=0.112000, rms=0.806 (0.005%), neg=0, invalid=96777 0072: dt=0.112000, rms=0.806 (0.005%), neg=0, invalid=96777 0073: dt=0.112000, rms=0.806 (-0.005%), neg=0, invalid=96777 resetting metric properties... setting smoothness coefficient to 10.000 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.726, neg=0, invalid=96777 0074: dt=0.320000, rms=0.708 (2.520%), neg=0, invalid=96777 0075: dt=0.000000, rms=0.708 (0.005%), neg=0, invalid=96777 0076: dt=0.050000, rms=0.708 (-0.470%), neg=0, invalid=96777 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.708, neg=0, invalid=96777 0077: dt=0.000000, rms=0.708 (0.000%), neg=0, invalid=96777 renormalizing by structure alignment.... renormalizing input #0 gca peak = 0.11725 (24) mri peak = 0.20153 ( 9) Left_Lateral_Ventricle (4): linear fit = 0.31 x + 0.0 (1109 voxels, overlap=0.005) Left_Lateral_Ventricle (4): linear fit = 0.40 x + 0.0 (1109 voxels, peak = 8), gca=9.6 gca peak = 0.14022 (22) mri peak = 0.20320 ( 9) Right_Lateral_Ventricle (43): linear fit = 0.32 x + 0.0 (1059 voxels, overlap=0.005) Right_Lateral_Ventricle (43): linear fit = 0.40 x + 0.0 (1059 voxels, peak = 7), gca=8.8 gca peak = 0.24234 (100) mri peak = 0.09929 (112) Right_Pallidum (52): linear fit = 1.11 x + 0.0 (564 voxels, overlap=0.119) Right_Pallidum (52): linear fit = 1.11 x + 0.0 (564 voxels, peak = 110), gca=110.5 gca peak = 0.19192 (97) mri peak = 0.05859 (101) Left_Pallidum (13): linear fit = 1.01 x + 0.0 (490 voxels, overlap=1.001) Left_Pallidum (13): linear fit = 1.01 x + 0.0 (490 voxels, peak = 98), gca=98.5 gca peak = 0.24007 (63) mri peak = 0.06266 (73) Right_Hippocampus (53): linear fit = 1.13 x + 0.0 (1004 voxels, overlap=0.044) Right_Hippocampus (53): linear fit = 1.13 x + 0.0 (1004 voxels, peak = 72), gca=71.5 gca peak = 0.29892 (64) mri peak = 0.06250 (77) Left_Hippocampus (17): linear fit = 1.16 x + 0.0 (1055 voxels, overlap=0.025) Left_Hippocampus (17): linear fit = 1.16 x + 0.0 (1055 voxels, peak = 75), gca=74.6 gca peak = 0.12541 (104) mri peak = 0.08757 (107) Right_Cerebral_White_Matter (41): linear fit = 1.03 x + 0.0 (84123 voxels, overlap=0.696) Right_Cerebral_White_Matter (41): linear fit = 1.03 x + 0.0 (84123 voxels, peak = 108), gca=107.6 gca peak = 0.13686 (104) mri peak = 0.06987 (108) Left_Cerebral_White_Matter (2): linear fit = 1.04 x + 0.0 (89877 voxels, overlap=0.772) Left_Cerebral_White_Matter (2): linear fit = 1.04 x + 0.0 (89877 voxels, peak = 109), gca=108.7 gca peak = 0.11691 (63) mri peak = 0.03156 (83) Left_Cerebral_Cortex (3): linear fit = 1.29 x + 0.0 (34583 voxels, overlap=0.022) Left_Cerebral_Cortex (3): linear fit = 1.29 x + 0.0 (34583 voxels, peak = 82), gca=81.6 gca peak = 0.13270 (63) mri peak = 0.03351 (78) Right_Cerebral_Cortex (42): linear fit = 1.25 x + 0.0 (42129 voxels, overlap=0.004) Right_Cerebral_Cortex (42): linear fit = 1.25 x + 0.0 (42129 voxels, peak = 78), gca=78.4 gca peak = 0.15182 (70) mri peak = 0.15909 (89) Right_Caudate (50): linear fit = 1.25 x + 0.0 (416 voxels, overlap=0.012) Right_Caudate (50): linear fit = 1.25 x + 0.0 (416 voxels, peak = 87), gca=87.2 gca peak = 0.14251 (76) mri peak = 0.14977 (100) Left_Caudate (11): linear fit = 1.20 x + 0.0 (954 voxels, overlap=0.012) Left_Caudate (11): linear fit = 1.20 x + 0.0 (954 voxels, peak = 91), gca=90.8 gca peak = 0.12116 (60) mri peak = 0.05461 (76) Left_Cerebellum_Cortex (8): linear fit = 1.26 x + 0.0 (25132 voxels, overlap=0.001) Left_Cerebellum_Cortex (8): linear fit = 1.26 x + 0.0 (25132 voxels, peak = 76), gca=75.9 gca peak = 0.12723 (61) mri peak = 0.05792 (76) Right_Cerebellum_Cortex (47): linear fit = 1.26 x + 0.0 (32182 voxels, overlap=0.001) Right_Cerebellum_Cortex (47): linear fit = 1.26 x + 0.0 (32182 voxels, peak = 77), gca=77.2 gca peak = 0.22684 (88) mri peak = 0.07239 (90) Left_Cerebellum_White_Matter (7): linear fit = 1.09 x + 0.0 (9897 voxels, overlap=0.583) Left_Cerebellum_White_Matter (7): linear fit = 1.09 x + 0.0 (9897 voxels, peak = 95), gca=95.5 gca peak = 0.21067 (87) mri peak = 0.06771 (87) Right_Cerebellum_White_Matter (46): linear fit = 1.02 x + 0.0 (9098 voxels, overlap=0.924) Right_Cerebellum_White_Matter (46): linear fit = 1.02 x + 0.0 (9098 voxels, peak = 89), gca=89.2 gca peak = 0.25455 (62) mri peak = 0.09383 (64) Left_Amygdala (18): linear fit = 1.12 x + 0.0 (405 voxels, overlap=0.866) Left_Amygdala (18): linear fit = 1.12 x + 0.0 (405 voxels, peak = 69), gca=69.1 gca peak = 0.39668 (62) mri peak = 0.12613 (72) Right_Amygdala (54): linear fit = 1.14 x + 0.0 (441 voxels, overlap=0.216) Right_Amygdala (54): linear fit = 1.14 x + 0.0 (441 voxels, peak = 71), gca=71.0 gca peak = 0.10129 (93) mri peak = 0.08480 (107) Left_Thalamus_Proper (10): linear fit = 1.13 x + 0.0 (5478 voxels, overlap=0.033) Left_Thalamus_Proper (10): linear fit = 1.13 x + 0.0 (5478 voxels, peak = 106), gca=105.6 gca peak = 0.12071 (89) mri peak = 0.09729 (102) Right_Thalamus_Proper (49): linear fit = 1.13 x + 0.0 (3589 voxels, overlap=0.069) Right_Thalamus_Proper (49): linear fit = 1.13 x + 0.0 (3589 voxels, peak = 101), gca=101.0 gca peak = 0.13716 (82) mri peak = 0.06213 (97) Left_Putamen (12): linear fit = 1.16 x + 0.0 (2832 voxels, overlap=0.184) Left_Putamen (12): linear fit = 1.16 x + 0.0 (2832 voxels, peak = 96), gca=95.5 gca peak = 0.15214 (84) mri peak = 0.07204 (103) Right_Putamen (51): linear fit = 1.22 x + 0.0 (2862 voxels, overlap=0.028) Right_Putamen (51): linear fit = 1.22 x + 0.0 (2862 voxels, peak = 102), gca=102.1 gca peak = 0.08983 (85) mri peak = 0.06448 (90) Brain_Stem (16): linear fit = 1.09 x + 0.0 (13384 voxels, overlap=0.592) Brain_Stem (16): linear fit = 1.09 x + 0.0 (13384 voxels, peak = 92), gca=92.2 gca peak = 0.11809 (92) mri peak = 0.09191 (105) Right_VentralDC (60): linear fit = 1.12 x + 0.0 (1049 voxels, overlap=0.455) Right_VentralDC (60): linear fit = 1.12 x + 0.0 (1049 voxels, peak = 104), gca=103.5 gca peak = 0.12914 (94) mri peak = 0.08696 (109) Left_VentralDC (28): linear fit = 1.12 x + 0.0 (1338 voxels, overlap=0.330) Left_VentralDC (28): linear fit = 1.12 x + 0.0 (1338 voxels, peak = 106), gca=105.8 gca peak = 0.21100 (36) uniform distribution in MR - rejecting arbitrary fit gca peak = 0.13542 (27) mri peak = 0.11643 (11) Fourth_Ventricle (15): linear fit = 0.37 x + 0.0 (545 voxels, overlap=0.015) Fourth_Ventricle (15): linear fit = 0.37 x + 0.0 (545 voxels, peak = 10), gca=9.9 gca peak Unknown = 0.94427 ( 0) gca peak Left_Inf_Lat_Vent = 0.21802 (40) gca peak Third_Ventricle = 0.21100 (36) gca peak Fourth_Ventricle = 0.13542 (27) gca peak CSF = 0.17123 (45) gca peak Left_Accumbens_area = 0.25875 (69) gca peak Left_undetermined = 0.96240 (36) gca peak Left_vessel = 0.33262 (65) gca peak Left_choroid_plexus = 0.09846 (46) gca peak Right_Inf_Lat_Vent = 0.28113 (34) gca peak Right_Accumbens_area = 0.27120 (72) gca peak Right_vessel = 0.61915 (60) gca peak Right_choroid_plexus = 0.12775 (51) gca peak Fifth_Ventricle = 0.45329 (44) gca peak WM_hypointensities = 0.11729 (81) gca peak non_WM_hypointensities = 0.10912 (56) gca peak Optic_Chiasm = 0.33287 (75) label assignment complete, 0 changed (0.00%) not using caudate to estimate GM means estimating mean gm scale to be 1.18 x + 0.0 estimating mean wm scale to be 1.04 x + 0.0 estimating mean csf scale to be 0.40 x + 0.0 Right_Putamen too bright - rescaling by 0.954 (from 1.215) to 97.3 (was 102.1) Right_Pallidum too bright - rescaling by 0.949 (from 1.105) to 104.9 (was 110.5) saving intensity scales to talairach.label_intensities.txt **************** pass 1 of 1 ************************ setting smoothness coefficient to 0.008 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.732, neg=0, invalid=96777 0078: dt=55.488000, rms=0.715 (2.348%), neg=0, invalid=96777 0079: dt=32.368000, rms=0.714 (0.139%), neg=0, invalid=96777 0080: dt=32.368000, rms=0.714 (0.059%), neg=0, invalid=96777 0081: dt=32.368000, rms=0.713 (0.040%), neg=0, invalid=96777 0082: dt=32.368000, rms=0.713 (0.054%), neg=0, invalid=96777 0083: dt=32.368000, rms=0.713 (0.056%), neg=0, invalid=96777 0084: dt=32.368000, rms=0.712 (0.052%), neg=0, invalid=96777 0085: dt=32.368000, rms=0.712 (0.088%), neg=0, invalid=96777 0086: dt=32.368000, rms=0.710 (0.170%), neg=0, invalid=96777 0087: dt=32.368000, rms=0.709 (0.241%), neg=0, invalid=96777 0088: dt=32.368000, rms=0.706 (0.322%), neg=0, invalid=96777 0089: dt=32.368000, rms=0.704 (0.367%), neg=0, invalid=96777 0090: dt=32.368000, rms=0.701 (0.388%), neg=0, invalid=96777 0091: dt=32.368000, rms=0.698 (0.378%), neg=0, invalid=96777 0092: dt=32.368000, rms=0.696 (0.341%), neg=0, invalid=96777 0093: dt=32.368000, rms=0.694 (0.279%), neg=0, invalid=96777 0094: dt=32.368000, rms=0.693 (0.218%), neg=0, invalid=96777 0095: dt=32.368000, rms=0.691 (0.175%), neg=0, invalid=96777 0096: dt=32.368000, rms=0.690 (0.170%), neg=0, invalid=96777 0097: dt=32.368000, rms=0.689 (0.169%), neg=0, invalid=96777 0098: dt=32.368000, rms=0.688 (0.150%), neg=0, invalid=96777 0099: dt=32.368000, rms=0.687 (0.163%), neg=0, invalid=96777 0100: dt=32.368000, rms=0.686 (0.177%), neg=0, invalid=96777 0101: dt=32.368000, rms=0.684 (0.166%), neg=0, invalid=96777 0102: dt=32.368000, rms=0.683 (0.148%), neg=0, invalid=96777 0103: dt=32.368000, rms=0.683 (0.131%), neg=0, invalid=96777 0104: dt=32.368000, rms=0.682 (0.135%), neg=0, invalid=96777 0105: dt=32.368000, rms=0.681 (0.122%), neg=0, invalid=96777 0106: dt=32.368000, rms=0.680 (0.124%), neg=0, invalid=96777 0107: dt=32.368000, rms=0.679 (0.119%), neg=0, invalid=96777 0108: dt=16.184000, rms=0.679 (0.017%), neg=0, invalid=96777 0109: dt=8.092000, rms=0.679 (0.008%), neg=0, invalid=96777 0110: dt=0.126438, rms=0.679 (0.000%), neg=0, invalid=96777 0111: dt=0.126438, rms=0.679 (0.000%), neg=0, invalid=96777 0112: dt=0.063219, rms=0.679 (0.000%), neg=0, invalid=96777 0113: dt=0.007902, rms=0.679 (0.000%), neg=0, invalid=96777 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.679, neg=0, invalid=96777 0114: dt=0.000000, rms=0.679 (0.000%), neg=0, invalid=96777 setting smoothness coefficient to 0.031 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.679, neg=0, invalid=96777 0115: dt=0.000000, rms=0.679 (0.000%), neg=0, invalid=96777 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.679, neg=0, invalid=96777 0116: dt=0.000000, rms=0.679 (0.000%), neg=0, invalid=96777 setting smoothness coefficient to 0.118 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.681, neg=0, invalid=96777 0117: dt=0.000000, rms=0.681 (0.000%), neg=0, invalid=96777 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.681, neg=0, invalid=96777 0118: dt=0.000000, rms=0.681 (0.000%), neg=0, invalid=96777 setting smoothness coefficient to 0.400 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.685, neg=0, invalid=96777 0119: dt=1.008000, rms=0.677 (1.213%), neg=0, invalid=96777 0120: dt=4.032000, rms=0.647 (4.327%), neg=0, invalid=96777 0121: dt=4.032000, rms=0.628 (2.960%), neg=0, invalid=96777 0122: dt=2.880000, rms=0.618 (1.571%), neg=0, invalid=96777 0123: dt=4.032000, rms=0.607 (1.812%), neg=0, invalid=96777 0124: dt=3.456000, rms=0.601 (1.097%), neg=0, invalid=96777 0125: dt=4.032000, rms=0.594 (1.159%), neg=0, invalid=96777 0126: dt=4.032000, rms=0.589 (0.786%), neg=0, invalid=96777 0127: dt=4.032000, rms=0.584 (0.754%), neg=0, invalid=96777 0128: dt=4.032000, rms=0.581 (0.534%), neg=0, invalid=96777 0129: dt=4.032000, rms=0.578 (0.502%), neg=0, invalid=96777 0130: dt=4.032000, rms=0.576 (0.355%), neg=0, invalid=96777 0131: dt=4.032000, rms=0.574 (0.359%), neg=0, invalid=96777 0132: dt=4.032000, rms=0.573 (0.255%), neg=0, invalid=96777 0133: dt=4.032000, rms=0.571 (0.269%), neg=0, invalid=96777 0134: dt=3.456000, rms=0.570 (0.158%), neg=0, invalid=96777 0135: dt=4.032000, rms=0.569 (0.214%), neg=0, invalid=96777 0136: dt=4.032000, rms=0.568 (0.123%), neg=0, invalid=96777 0137: dt=4.032000, rms=0.567 (0.195%), neg=0, invalid=96777 0138: dt=1.008000, rms=0.567 (0.025%), neg=0, invalid=96777 0139: dt=1.008000, rms=0.567 (0.034%), neg=0, invalid=96777 0140: dt=1.008000, rms=0.567 (0.061%), neg=0, invalid=96777 0141: dt=1.008000, rms=0.566 (0.086%), neg=0, invalid=96777 0142: dt=1.008000, rms=0.566 (0.105%), neg=0, invalid=96777 0143: dt=1.008000, rms=0.565 (0.125%), neg=0, invalid=96777 0144: dt=1.008000, rms=0.564 (0.126%), neg=0, invalid=96777 0145: dt=1.008000, rms=0.564 (0.026%), neg=0, invalid=96777 0146: dt=1.008000, rms=0.564 (0.040%), neg=0, invalid=96777 0147: dt=1.008000, rms=0.563 (0.055%), neg=0, invalid=96777 0148: dt=1.008000, rms=0.563 (0.065%), neg=0, invalid=96777 0149: dt=1.008000, rms=0.563 (0.074%), neg=0, invalid=96777 0150: dt=1.008000, rms=0.562 (0.088%), neg=0, invalid=96777 0151: dt=1.008000, rms=0.562 (0.091%), neg=0, invalid=96777 0152: dt=1.008000, rms=0.561 (0.093%), neg=0, invalid=96777 0153: dt=1.008000, rms=0.561 (0.097%), neg=0, invalid=96777 0154: dt=1.008000, rms=0.560 (0.100%), neg=0, invalid=96777 0155: dt=1.008000, rms=0.559 (0.104%), neg=0, invalid=96777 0156: dt=1.008000, rms=0.559 (0.095%), neg=0, invalid=96777 0157: dt=1.008000, rms=0.558 (0.087%), neg=0, invalid=96777 0158: dt=1.008000, rms=0.558 (0.096%), neg=0, invalid=96777 0159: dt=1.008000, rms=0.558 (0.077%), neg=0, invalid=96777 0160: dt=1.008000, rms=0.557 (0.076%), neg=0, invalid=96777 0161: dt=1.008000, rms=0.557 (0.073%), neg=0, invalid=96777 0162: dt=1.008000, rms=0.556 (0.068%), neg=0, invalid=96777 0163: dt=1.008000, rms=0.556 (0.063%), neg=0, invalid=96777 0164: dt=1.008000, rms=0.556 (0.057%), neg=0, invalid=96777 0165: dt=1.008000, rms=0.555 (0.044%), neg=0, invalid=96777 0166: dt=1.008000, rms=0.555 (0.049%), neg=0, invalid=96777 0167: dt=1.008000, rms=0.555 (0.042%), neg=0, invalid=96777 0168: dt=1.008000, rms=0.555 (0.035%), neg=0, invalid=96777 0169: dt=1.008000, rms=0.555 (0.033%), neg=0, invalid=96777 0170: dt=1.008000, rms=0.554 (0.037%), neg=0, invalid=96777 0171: dt=1.008000, rms=0.554 (0.033%), neg=0, invalid=96777 0172: dt=1.008000, rms=0.554 (0.037%), neg=0, invalid=96777 0173: dt=1.008000, rms=0.554 (0.028%), neg=0, invalid=96777 0174: dt=1.008000, rms=0.554 (0.024%), neg=0, invalid=96777 0175: dt=1.008000, rms=0.553 (0.023%), neg=0, invalid=96777 0176: dt=11.520000, rms=0.553 (0.018%), neg=0, invalid=96777 0177: dt=2.880000, rms=0.553 (0.002%), neg=0, invalid=96777 0178: dt=2.880000, rms=0.553 (-0.003%), neg=0, invalid=96777 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.553, neg=0, invalid=96777 0179: dt=0.000000, rms=0.553 (0.000%), neg=0, invalid=96777 setting smoothness coefficient to 1.000 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.575, neg=0, invalid=96777 0180: dt=0.000000, rms=0.575 (0.000%), neg=0, invalid=96777 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.575, neg=0, invalid=96777 0181: dt=0.000000, rms=0.575 (0.000%), neg=0, invalid=96777 resetting metric properties... setting smoothness coefficient to 2.000 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.538, neg=0, invalid=96777 0182: dt=0.112000, rms=0.533 (1.025%), neg=0, invalid=96777 0183: dt=0.024000, rms=0.532 (0.169%), neg=0, invalid=96777 0184: dt=0.001750, rms=0.532 (0.015%), neg=0, invalid=96777 0185: dt=0.001750, rms=0.532 (0.011%), neg=0, invalid=96777 0186: dt=0.001750, rms=0.532 (0.022%), neg=0, invalid=96777 0187: dt=0.001750, rms=0.531 (0.032%), neg=0, invalid=96777 0188: dt=0.001750, rms=0.531 (0.040%), neg=0, invalid=96777 0189: dt=0.001750, rms=0.531 (0.047%), neg=0, invalid=96777 0190: dt=0.001750, rms=0.531 (0.054%), neg=0, invalid=96777 0191: dt=0.001750, rms=0.530 (0.059%), neg=0, invalid=96777 0192: dt=0.001750, rms=0.530 (0.065%), neg=0, invalid=96777 0193: dt=0.001750, rms=0.530 (0.069%), neg=0, invalid=96777 0194: dt=0.001750, rms=0.529 (0.074%), neg=0, invalid=96777 0195: dt=0.001750, rms=0.529 (0.076%), neg=0, invalid=96777 0196: dt=0.001750, rms=0.528 (0.077%), neg=0, invalid=96777 0197: dt=0.001750, rms=0.528 (0.079%), neg=0, invalid=96777 0198: dt=0.001750, rms=0.528 (0.081%), neg=0, invalid=96777 0199: dt=0.001750, rms=0.527 (0.081%), neg=0, invalid=96777 0200: dt=0.001750, rms=0.527 (0.083%), neg=0, invalid=96777 0201: dt=0.001750, rms=0.526 (0.083%), neg=0, invalid=96777 0202: dt=0.001750, rms=0.526 (0.082%), neg=0, invalid=96777 0203: dt=0.001750, rms=0.525 (0.082%), neg=0, invalid=96777 0204: dt=0.001750, rms=0.525 (0.082%), neg=0, invalid=96777 0205: dt=0.001750, rms=0.525 (0.080%), neg=0, invalid=96777 0206: dt=0.001750, rms=0.524 (0.079%), neg=0, invalid=96777 0207: dt=0.001750, rms=0.524 (0.079%), neg=0, invalid=96777 0208: dt=0.001750, rms=0.523 (0.077%), neg=0, invalid=96777 0209: dt=0.001750, rms=0.523 (0.077%), neg=0, invalid=96777 0210: dt=0.001750, rms=0.523 (0.075%), neg=0, invalid=96777 0211: dt=0.001750, rms=0.522 (0.068%), neg=0, invalid=96777 0212: dt=0.001750, rms=0.522 (0.071%), neg=0, invalid=96777 0213: dt=0.001750, rms=0.521 (0.069%), neg=0, invalid=96777 0214: dt=0.001750, rms=0.521 (0.067%), neg=0, invalid=96777 0215: dt=0.001750, rms=0.521 (0.066%), neg=0, invalid=96777 0216: dt=0.001750, rms=0.520 (0.063%), neg=0, invalid=96777 0217: dt=0.001750, rms=0.520 (0.062%), neg=0, invalid=96777 0218: dt=0.001750, rms=0.520 (0.060%), neg=0, invalid=96777 0219: dt=0.001750, rms=0.520 (0.060%), neg=0, invalid=96777 0220: dt=0.001750, rms=0.519 (0.054%), neg=0, invalid=96777 0221: dt=0.001750, rms=0.519 (0.054%), neg=0, invalid=96777 0222: dt=0.001750, rms=0.519 (0.051%), neg=0, invalid=96777 0223: dt=0.001750, rms=0.518 (0.051%), neg=0, invalid=96777 0224: dt=0.001750, rms=0.518 (0.048%), neg=0, invalid=96777 0225: dt=0.001750, rms=0.518 (0.048%), neg=0, invalid=96777 0226: dt=0.001750, rms=0.518 (0.045%), neg=0, invalid=96777 0227: dt=0.001750, rms=0.517 (0.047%), neg=0, invalid=96777 0228: dt=0.001750, rms=0.517 (0.039%), neg=0, invalid=96777 0229: dt=0.001750, rms=0.517 (0.040%), neg=0, invalid=96777 0230: dt=0.001750, rms=0.517 (0.039%), neg=0, invalid=96777 0231: dt=0.001750, rms=0.517 (0.035%), neg=0, invalid=96777 0232: dt=0.001750, rms=0.516 (0.036%), neg=0, invalid=96777 0233: dt=0.001750, rms=0.516 (0.033%), neg=0, invalid=96777 0234: dt=0.001750, rms=0.516 (0.033%), neg=0, invalid=96777 0235: dt=0.001750, rms=0.516 (0.033%), neg=0, invalid=96777 0236: dt=0.001750, rms=0.516 (0.031%), neg=0, invalid=96777 0237: dt=0.001750, rms=0.516 (0.032%), neg=0, invalid=96777 0238: dt=0.001750, rms=0.515 (0.028%), neg=0, invalid=96777 0239: dt=0.001750, rms=0.515 (0.025%), neg=0, invalid=96777 0240: dt=0.001750, rms=0.515 (0.026%), neg=0, invalid=96777 0241: dt=0.001750, rms=0.515 (0.025%), neg=0, invalid=96777 0242: dt=0.001750, rms=0.515 (0.027%), neg=0, invalid=96777 0243: dt=0.001750, rms=0.515 (0.026%), neg=0, invalid=96777 0244: dt=0.001750, rms=0.515 (0.023%), neg=0, invalid=96777 0245: dt=0.001750, rms=0.515 (0.021%), neg=0, invalid=96777 0246: dt=0.384000, rms=0.513 (0.296%), neg=0, invalid=96777 0247: dt=0.001750, rms=0.513 (-0.000%), neg=0, invalid=96777 0248: dt=0.001750, rms=0.513 (0.001%), neg=0, invalid=96777 0249: dt=0.001750, rms=0.513 (0.002%), neg=0, invalid=96777 0250: dt=0.001750, rms=0.513 (0.002%), neg=0, invalid=96777 0251: dt=0.001750, rms=0.513 (0.003%), neg=0, invalid=96777 0252: dt=0.001750, rms=0.513 (0.004%), neg=0, invalid=96777 0253: dt=0.001750, rms=0.513 (0.004%), neg=0, invalid=96777 0254: dt=0.001750, rms=0.513 (0.005%), neg=0, invalid=96777 0255: dt=0.001750, rms=0.513 (0.006%), neg=0, invalid=96777 0256: dt=0.001750, rms=0.513 (0.005%), neg=0, invalid=96777 0257: dt=0.001750, rms=0.513 (0.006%), neg=0, invalid=96777 0258: dt=0.001750, rms=0.513 (0.006%), neg=0, invalid=96777 0259: dt=0.001750, rms=0.513 (0.007%), neg=0, invalid=96777 0260: dt=0.001750, rms=0.513 (0.005%), neg=0, invalid=96777 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.513, neg=0, invalid=96777 0261: dt=0.028000, rms=0.512 (0.099%), neg=0, invalid=96777 0262: dt=0.005000, rms=0.512 (0.017%), neg=0, invalid=96777 0263: dt=0.001250, rms=0.512 (0.005%), neg=0, invalid=96777 0264: dt=0.001250, rms=0.512 (0.004%), neg=0, invalid=96777 0265: dt=0.001250, rms=0.512 (0.008%), neg=0, invalid=96777 0266: dt=0.001250, rms=0.512 (0.012%), neg=0, invalid=96777 0267: dt=0.001250, rms=0.512 (0.017%), neg=0, invalid=96777 0268: dt=0.001250, rms=0.512 (0.017%), neg=0, invalid=96777 0269: dt=0.001250, rms=0.512 (0.019%), neg=0, invalid=96777 0270: dt=0.001250, rms=0.512 (0.020%), neg=0, invalid=96777 0271: dt=0.001250, rms=0.512 (0.023%), neg=0, invalid=96777 0272: dt=0.001250, rms=0.511 (0.025%), neg=0, invalid=96777 0273: dt=0.001250, rms=0.511 (0.026%), neg=0, invalid=96777 0274: dt=0.001250, rms=0.511 (0.028%), neg=0, invalid=96777 0275: dt=0.001250, rms=0.511 (0.028%), neg=0, invalid=96777 0276: dt=0.001250, rms=0.511 (0.029%), neg=0, invalid=96777 0277: dt=0.001250, rms=0.511 (0.030%), neg=0, invalid=96777 0278: dt=0.001250, rms=0.511 (0.030%), neg=0, invalid=96777 0279: dt=0.001250, rms=0.510 (0.031%), neg=0, invalid=96777 0280: dt=0.001250, rms=0.510 (0.032%), neg=0, invalid=96777 0281: dt=0.001250, rms=0.510 (0.029%), neg=0, invalid=96777 0282: dt=0.001250, rms=0.510 (0.031%), neg=0, invalid=96777 0283: dt=0.001250, rms=0.510 (0.031%), neg=0, invalid=96777 0284: dt=0.001250, rms=0.510 (0.030%), neg=0, invalid=96777 0285: dt=0.001250, rms=0.509 (0.030%), neg=0, invalid=96777 0286: dt=0.001250, rms=0.509 (0.030%), neg=0, invalid=96777 0287: dt=0.001250, rms=0.509 (0.033%), neg=0, invalid=96777 0288: dt=0.001250, rms=0.509 (0.030%), neg=0, invalid=96777 0289: dt=0.001250, rms=0.509 (0.030%), neg=0, invalid=96777 0290: dt=0.001250, rms=0.509 (0.029%), neg=0, invalid=96777 0291: dt=0.001250, rms=0.509 (0.029%), neg=0, invalid=96777 0292: dt=0.001250, rms=0.508 (0.029%), neg=0, invalid=96777 0293: dt=0.001250, rms=0.508 (0.027%), neg=0, invalid=96777 0294: dt=0.001250, rms=0.508 (0.026%), neg=0, invalid=96777 0295: dt=0.001250, rms=0.508 (0.027%), neg=0, invalid=96777 0296: dt=0.001250, rms=0.508 (0.026%), neg=0, invalid=96777 0297: dt=0.001250, rms=0.508 (0.026%), neg=0, invalid=96777 0298: dt=0.001250, rms=0.508 (0.025%), neg=0, invalid=96777 0299: dt=0.001250, rms=0.507 (0.025%), neg=0, invalid=96777 0300: dt=0.001250, rms=0.507 (0.024%), neg=0, invalid=96777 0301: dt=0.028000, rms=0.507 (0.041%), neg=0, invalid=96777 0302: dt=0.024000, rms=0.507 (0.029%), neg=0, invalid=96777 0303: dt=0.001500, rms=0.507 (0.007%), neg=0, invalid=96777 0304: dt=0.001500, rms=0.507 (0.004%), neg=0, invalid=96777 0305: dt=0.001500, rms=0.507 (0.005%), neg=0, invalid=96777 0306: dt=0.001500, rms=0.507 (0.007%), neg=0, invalid=96777 0307: dt=0.001500, rms=0.507 (0.004%), neg=0, invalid=96777 label assignment complete, 0 changed (0.00%) ********************************************************************************************* ********************************************************************************************* ********************************************************************************************* ********************* ALLOWING NEGATIVE NODES IN DEFORMATION ******************************** ********************************************************************************************* ********************************************************************************************* ********************************************************************************************* **************** pass 1 of 1 ************************ setting smoothness coefficient to 0.008 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.505, neg=0, invalid=96777 0308: dt=0.000000, rms=0.505 (0.000%), neg=0, invalid=96777 0309: dt=0.000000, rms=0.505 (0.000%), neg=0, invalid=96777 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.505, neg=0, invalid=96777 0310: dt=0.000000, rms=0.505 (0.000%), neg=0, invalid=96777 setting smoothness coefficient to 0.031 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.505, neg=0, invalid=96777 iter 0, gcam->neg = 1 after 4 iterations, nbhd size=0, neg = 0 0311: dt=9.072000, rms=0.505 (0.020%), neg=0, invalid=96777 0312: dt=15.552000, rms=0.505 (0.025%), neg=0, invalid=96777 0313: dt=25.920000, rms=0.505 (0.041%), neg=0, invalid=96777 0314: dt=82.944000, rms=0.504 (0.121%), neg=0, invalid=96777 0315: dt=15.552000, rms=0.504 (0.029%), neg=0, invalid=96777 0316: dt=15.552000, rms=0.504 (0.071%), neg=0, invalid=96777 0317: dt=15.552000, rms=0.503 (0.078%), neg=0, invalid=96777 0318: dt=15.552000, rms=0.503 (0.092%), neg=0, invalid=96777 iter 0, gcam->neg = 1 after 5 iterations, nbhd size=1, neg = 0 0319: dt=15.552000, rms=0.502 (0.108%), neg=0, invalid=96777 0320: dt=15.552000, rms=0.502 (0.086%), neg=0, invalid=96777 iter 0, gcam->neg = 3 after 7 iterations, nbhd size=1, neg = 0 0321: dt=15.552000, rms=0.502 (0.029%), neg=0, invalid=96777 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.502, neg=0, invalid=96777 0322: dt=36.288000, rms=0.501 (0.227%), neg=0, invalid=96777 0323: dt=82.944000, rms=0.499 (0.294%), neg=0, invalid=96777 0324: dt=9.072000, rms=0.499 (0.053%), neg=0, invalid=96777 0325: dt=9.072000, rms=0.499 (0.020%), neg=0, invalid=96777 0326: dt=9.072000, rms=0.499 (0.010%), neg=0, invalid=96777 0327: dt=9.072000, rms=0.499 (0.012%), neg=0, invalid=96777 0328: dt=9.072000, rms=0.499 (0.033%), neg=0, invalid=96777 0329: dt=9.072000, rms=0.498 (0.071%), neg=0, invalid=96777 0330: dt=9.072000, rms=0.498 (0.086%), neg=0, invalid=96777 0331: dt=9.072000, rms=0.497 (0.069%), neg=0, invalid=96777 0332: dt=25.920000, rms=0.497 (0.006%), neg=0, invalid=96777 setting smoothness coefficient to 0.118 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.498, neg=0, invalid=96777 iter 0, gcam->neg = 36 after 22 iterations, nbhd size=2, neg = 0 0333: dt=25.600000, rms=0.496 (0.418%), neg=0, invalid=96777 iter 0, gcam->neg = 2 after 2 iterations, nbhd size=0, neg = 0 0334: dt=1.304348, rms=0.496 (0.015%), neg=0, invalid=96777 0335: dt=1.304348, rms=0.495 (0.035%), neg=0, invalid=96777 iter 0, gcam->neg = 1 after 0 iterations, nbhd size=0, neg = 0 0336: dt=1.304348, rms=0.495 (0.076%), neg=0, invalid=96777 iter 0, gcam->neg = 2 after 0 iterations, nbhd size=0, neg = 0 0337: dt=1.304348, rms=0.494 (0.106%), neg=0, invalid=96777 iter 0, gcam->neg = 1 after 1 iterations, nbhd size=0, neg = 0 0338: dt=1.304348, rms=0.494 (0.113%), neg=0, invalid=96777 iter 0, gcam->neg = 1 after 1 iterations, nbhd size=0, neg = 0 0339: dt=1.304348, rms=0.493 (0.120%), neg=0, invalid=96777 iter 0, gcam->neg = 4 after 9 iterations, nbhd size=1, neg = 0 0340: dt=1.304348, rms=0.493 (0.105%), neg=0, invalid=96777 0341: dt=1.304348, rms=0.492 (0.093%), neg=0, invalid=96777 iter 0, gcam->neg = 2 after 6 iterations, nbhd size=1, neg = 0 0342: dt=11.200000, rms=0.492 (0.149%), neg=0, invalid=96777 iter 0, gcam->neg = 5 after 5 iterations, nbhd size=1, neg = 0 0343: dt=32.000000, rms=0.490 (0.230%), neg=0, invalid=96777 iter 0, gcam->neg = 5 after 8 iterations, nbhd size=1, neg = 0 0344: dt=9.600000, rms=0.490 (0.142%), neg=0, invalid=96777 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.490, neg=0, invalid=96777 iter 0, gcam->neg = 11 after 17 iterations, nbhd size=2, neg = 0 0345: dt=25.600000, rms=0.487 (0.535%), neg=0, invalid=96777 iter 0, gcam->neg = 1 after 0 iterations, nbhd size=0, neg = 0 0346: dt=6.666667, rms=0.486 (0.171%), neg=0, invalid=96777 0347: dt=6.666667, rms=0.485 (0.186%), neg=0, invalid=96777 0348: dt=6.666667, rms=0.484 (0.221%), neg=0, invalid=96777 iter 0, gcam->neg = 1 after 0 iterations, nbhd size=0, neg = 0 0349: dt=6.666667, rms=0.483 (0.238%), neg=0, invalid=96777 0350: dt=6.666667, rms=0.482 (0.183%), neg=0, invalid=96777 iter 0, gcam->neg = 6 after 7 iterations, nbhd size=1, neg = 0 0351: dt=6.666667, rms=0.482 (0.151%), neg=0, invalid=96777 0352: dt=6.666667, rms=0.481 (0.158%), neg=0, invalid=96777 iter 0, gcam->neg = 2 after 6 iterations, nbhd size=1, neg = 0 0353: dt=6.666667, rms=0.480 (0.192%), neg=0, invalid=96777 0354: dt=6.666667, rms=0.479 (0.215%), neg=0, invalid=96777 iter 0, gcam->neg = 1 after 6 iterations, nbhd size=1, neg = 0 0355: dt=6.666667, rms=0.478 (0.226%), neg=0, invalid=96777 iter 0, gcam->neg = 3 after 13 iterations, nbhd size=2, neg = 0 0356: dt=6.666667, rms=0.477 (0.209%), neg=0, invalid=96777 iter 0, gcam->neg = 4 after 6 iterations, nbhd size=1, neg = 0 0357: dt=6.666667, rms=0.476 (0.200%), neg=0, invalid=96777 iter 0, gcam->neg = 8 after 10 iterations, nbhd size=1, neg = 0 0358: dt=6.666667, rms=0.475 (0.100%), neg=0, invalid=96777 iter 0, gcam->neg = 3 after 0 iterations, nbhd size=0, neg = 0 0359: dt=6.666667, rms=0.475 (0.139%), neg=0, invalid=96777 iter 0, gcam->neg = 4 after 9 iterations, nbhd size=1, neg = 0 0360: dt=6.666667, rms=0.474 (0.101%), neg=0, invalid=96777 iter 0, gcam->neg = 1 after 1 iterations, nbhd size=0, neg = 0 0361: dt=6.666667, rms=0.473 (0.160%), neg=0, invalid=96777 iter 0, gcam->neg = 2 after 0 iterations, nbhd size=0, neg = 0 0362: dt=6.666667, rms=0.473 (0.164%), neg=0, invalid=96777 iter 0, gcam->neg = 2 after 10 iterations, nbhd size=1, neg = 0 0363: dt=6.666667, rms=0.472 (0.064%), neg=0, invalid=96777 iter 0, gcam->neg = 4 after 14 iterations, nbhd size=2, neg = 0 0364: dt=6.666667, rms=0.472 (0.118%), neg=0, invalid=96777 iter 0, gcam->neg = 2 after 12 iterations, nbhd size=2, neg = 0 0365: dt=6.666667, rms=0.471 (0.124%), neg=0, invalid=96777 iter 0, gcam->neg = 2 after 14 iterations, nbhd size=2, neg = 0 0366: dt=6.666667, rms=0.471 (0.067%), neg=0, invalid=96777 iter 0, gcam->neg = 3 after 14 iterations, nbhd size=2, neg = 0 0367: dt=11.200000, rms=0.470 (0.112%), neg=0, invalid=96777 0368: dt=2.800000, rms=0.470 (0.015%), neg=0, invalid=96777 0369: dt=2.800000, rms=0.470 (0.008%), neg=0, invalid=96777 0370: dt=2.800000, rms=0.470 (0.009%), neg=0, invalid=96777 0371: dt=2.800000, rms=0.470 (0.008%), neg=0, invalid=96777 0372: dt=2.800000, rms=0.470 (0.017%), neg=0, invalid=96777 0373: dt=2.800000, rms=0.470 (0.015%), neg=0, invalid=96777 setting smoothness coefficient to 0.400 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.475, neg=0, invalid=96777 iter 0, gcam->neg = 5 after 6 iterations, nbhd size=1, neg = 0 0374: dt=2.304000, rms=0.475 (0.052%), neg=0, invalid=96777 0375: dt=1.008000, rms=0.475 (0.008%), neg=0, invalid=96777 iter 0, gcam->neg = 5 after 0 iterations, nbhd size=0, neg = 0 0376: dt=1.008000, rms=0.475 (0.018%), neg=0, invalid=96777 iter 0, gcam->neg = 11 after 8 iterations, nbhd size=1, neg = 0 0377: dt=1.008000, rms=0.475 (0.026%), neg=0, invalid=96777 iter 0, gcam->neg = 22 after 31 iterations, nbhd size=3, neg = 0 0378: dt=1.008000, rms=0.475 (-0.092%), neg=0, invalid=96777 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.475, neg=0, invalid=96777 0379: dt=0.045000, rms=0.475 (0.000%), neg=0, invalid=96777 0380: dt=0.252000, rms=0.475 (0.001%), neg=0, invalid=96777 iter 0, gcam->neg = 11 after 17 iterations, nbhd size=2, neg = 0 0381: dt=2.880000, rms=0.475 (0.052%), neg=0, invalid=96777 0382: dt=0.252000, rms=0.475 (0.004%), neg=0, invalid=96777 0383: dt=0.252000, rms=0.475 (0.004%), neg=0, invalid=96777 0384: dt=0.252000, rms=0.475 (0.011%), neg=0, invalid=96777 0385: dt=0.252000, rms=0.474 (0.014%), neg=0, invalid=96777 0386: dt=0.252000, rms=0.474 (0.020%), neg=0, invalid=96777 0387: dt=0.252000, rms=0.474 (0.015%), neg=0, invalid=96777 0388: dt=0.252000, rms=0.474 (0.017%), neg=0, invalid=96777 0389: dt=0.252000, rms=0.474 (0.016%), neg=0, invalid=96777 setting smoothness coefficient to 1.000 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.482, neg=0, invalid=96777 0390: dt=0.000000, rms=0.482 (0.002%), neg=0, invalid=96777 0391: dt=0.000000, rms=0.482 (0.000%), neg=0, invalid=96777 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.482, neg=0, invalid=96777 iter 0, gcam->neg = 13 after 18 iterations, nbhd size=2, neg = 0 0392: dt=1.131783, rms=0.481 (0.122%), neg=0, invalid=96777 iter 0, gcam->neg = 1 after 0 iterations, nbhd size=0, neg = 0 0393: dt=0.112000, rms=0.481 (0.008%), neg=0, invalid=96777 0394: dt=0.112000, rms=0.481 (0.027%), neg=0, invalid=96777 iter 0, gcam->neg = 3 after 8 iterations, nbhd size=1, neg = 0 0395: dt=0.112000, rms=0.481 (0.043%), neg=0, invalid=96777 0396: dt=0.112000, rms=0.480 (0.050%), neg=0, invalid=96777 0397: dt=0.112000, rms=0.480 (0.051%), neg=0, invalid=96777 0398: dt=0.112000, rms=0.480 (0.053%), neg=0, invalid=96777 iter 0, gcam->neg = 6 after 8 iterations, nbhd size=1, neg = 0 0399: dt=0.112000, rms=0.480 (0.041%), neg=0, invalid=96777 iter 0, gcam->neg = 1 after 1 iterations, nbhd size=0, neg = 0 0400: dt=0.112000, rms=0.480 (0.025%), neg=0, invalid=96777 resetting metric properties... setting smoothness coefficient to 2.000 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.472, neg=0, invalid=96777 iter 0, gcam->neg = 1109 after 24 iterations, nbhd size=2, neg = 0 0401: dt=1.264923, rms=0.439 (7.015%), neg=0, invalid=96777 0402: dt=0.000109, rms=0.439 (-0.012%), neg=0, invalid=96777 0403: dt=0.000109, rms=0.439 (0.001%), neg=0, invalid=96777 0404: dt=0.000109, rms=0.439 (-0.000%), neg=0, invalid=96777 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.439, neg=0, invalid=96777 0405: dt=0.000313, rms=0.439 (0.001%), neg=0, invalid=96777 0406: dt=0.000000, rms=0.439 (0.000%), neg=0, invalid=96777 label assignment complete, 0 changed (0.00%) label assignment complete, 0 changed (0.00%) ***************** morphing with label term set to 0 ******************************* **************** pass 1 of 1 ************************ setting smoothness coefficient to 0.008 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.432, neg=0, invalid=96777 0407: dt=0.000000, rms=0.433 (-0.173%), neg=0, invalid=96777 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.433, neg=0, invalid=96777 0408: dt=32.368000, rms=0.432 (0.004%), neg=0, invalid=96777 0409: dt=0.000000, rms=0.432 (0.000%), neg=0, invalid=96777 setting smoothness coefficient to 0.031 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.433, neg=0, invalid=96777 0410: dt=0.000000, rms=0.433 (0.000%), neg=0, invalid=96777 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.433, neg=0, invalid=96777 iter 0, gcam->neg = 1 after 5 iterations, nbhd size=1, neg = 0 0411: dt=20.736000, rms=0.432 (0.017%), neg=0, invalid=96777 0412: dt=9.072000, rms=0.432 (0.005%), neg=0, invalid=96777 0413: dt=9.072000, rms=0.432 (0.002%), neg=0, invalid=96777 iter 0, gcam->neg = 5 after 14 iterations, nbhd size=2, neg = 0 0414: dt=9.072000, rms=0.432 (-0.003%), neg=0, invalid=96777 setting smoothness coefficient to 0.118 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.433, neg=0, invalid=96777 iter 0, gcam->neg = 13 after 28 iterations, nbhd size=3, neg = 0 0415: dt=8.000000, rms=0.432 (0.076%), neg=0, invalid=96777 iter 0, gcam->neg = 4 after 30 iterations, nbhd size=4, neg = 0 0416: dt=1.600000, rms=0.432 (-0.019%), neg=0, invalid=96777 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.432, neg=0, invalid=96777 iter 0, gcam->neg = 4 after 41 iterations, nbhd size=2, neg = 0 0417: dt=2.923077, rms=0.432 (0.040%), neg=0, invalid=96777 iter 0, gcam->neg = 17 after 17 iterations, nbhd size=2, neg = 0 0418: dt=9.600000, rms=0.432 (0.108%), neg=0, invalid=96777 iter 0, gcam->neg = 4 after 40 iterations, nbhd size=2, neg = 0 0419: dt=3.000000, rms=0.432 (0.037%), neg=0, invalid=96777 iter 0, gcam->neg = 2 after 14 iterations, nbhd size=2, neg = 0 0420: dt=3.000000, rms=0.431 (0.055%), neg=0, invalid=96777 iter 0, gcam->neg = 11 after 24 iterations, nbhd size=3, neg = 0 0421: dt=3.000000, rms=0.431 (0.060%), neg=0, invalid=96777 iter 0, gcam->neg = 12 after 33 iterations, nbhd size=4, neg = 0 0422: dt=3.000000, rms=0.431 (0.044%), neg=0, invalid=96777 iter 0, gcam->neg = 12 after 44 iterations, nbhd size=1, neg = 0 0423: dt=3.000000, rms=0.431 (0.081%), neg=0, invalid=96777 iter 0, gcam->neg = 15 after 200 iterations, nbhd size=3, neg = 1 starting rms=0.004, neg=1, removing folds in lattice.... iter 1, dt=0.000156: new neg 0, old_neg 1, delta 1, rms=0.003 (22.119%) 0424: dt=3.000000, rms=0.430 (0.086%), neg=0, invalid=96777 iter 0, gcam->neg = 6 after 200 iterations, nbhd size=1, neg = 1 starting rms=0.003, neg=1, removing folds in lattice.... iter 1, dt=0.000125: new neg 0, old_neg 1, delta 1, rms=0.003 (16.135%) 0425: dt=3.000000, rms=0.430 (0.055%), neg=0, invalid=96777 setting smoothness coefficient to 0.400 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.431, neg=0, invalid=96777 iter 0, gcam->neg = 101 after 200 iterations, nbhd size=1, neg = 2 starting rms=0.003, neg=2, removing folds in lattice.... iter 1, dt=0.000000: new neg 2, old_neg 2, delta 0, rms=0.003 (0.000%) ---------- unfolding failed - restoring original position -------------------- 0426: dt=2.844828, rms=0.431 (0.000%), neg=0, invalid=96777 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.431, neg=0, invalid=96777 iter 0, gcam->neg = 172 after 200 iterations, nbhd size=4, neg = 3 starting rms=0.004, neg=3, removing folds in lattice.... iter 1, dt=0.000000: new neg 3, old_neg 3, delta 0, rms=0.004 (0.000%) ---------- unfolding failed - restoring original position -------------------- 0427: dt=6.912000, rms=0.431 (0.000%), neg=0, invalid=96777 setting smoothness coefficient to 1.000 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.434, neg=0, invalid=96777 iter 0, gcam->neg = 3 after 6 iterations, nbhd size=1, neg = 0 0428: dt=0.256000, rms=0.434 (0.016%), neg=0, invalid=96777 0429: dt=0.048000, rms=0.434 (0.002%), neg=0, invalid=96777 iter 0, gcam->neg = 1 after 0 iterations, nbhd size=0, neg = 0 0430: dt=0.048000, rms=0.434 (0.008%), neg=0, invalid=96777 0431: dt=0.048000, rms=0.434 (0.015%), neg=0, invalid=96777 iter 0, gcam->neg = 4 after 36 iterations, nbhd size=1, neg = 0 0432: dt=0.048000, rms=0.434 (-0.006%), neg=0, invalid=96777 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.434, neg=0, invalid=96777 iter 0, gcam->neg = 62 after 200 iterations, nbhd size=2, neg = 1 starting rms=0.003, neg=1, removing folds in lattice.... iter 1, dt=0.000125: new neg 0, old_neg 1, delta 1, rms=0.001 (52.414%) 0433: dt=1.024000, rms=0.433 (0.242%), neg=0, invalid=96777 0434: dt=0.079545, rms=0.433 (0.002%), neg=0, invalid=96777 iter 0, gcam->neg = 1 after 0 iterations, nbhd size=0, neg = 0 0435: dt=0.079545, rms=0.432 (0.023%), neg=0, invalid=96777 iter 0, gcam->neg = 4 after 8 iterations, nbhd size=1, neg = 0 0436: dt=0.079545, rms=0.432 (0.040%), neg=0, invalid=96777 iter 0, gcam->neg = 3 after 8 iterations, nbhd size=1, neg = 0 0437: dt=0.079545, rms=0.432 (0.051%), neg=0, invalid=96777 0438: dt=0.079545, rms=0.432 (0.054%), neg=0, invalid=96777 iter 0, gcam->neg = 6 after 200 iterations, nbhd size=4, neg = 1 starting rms=0.002, neg=1, removing folds in lattice.... iter 1, dt=0.000125: new neg 0, old_neg 1, delta 1, rms=0.001 (50.328%) 0439: dt=0.079545, rms=0.432 (0.001%), neg=0, invalid=96777 iter 0, gcam->neg = 1 after 0 iterations, nbhd size=0, neg = 0 0440: dt=0.079545, rms=0.432 (0.007%), neg=0, invalid=96777 0441: dt=0.079545, rms=0.432 (0.021%), neg=0, invalid=96777 0442: dt=0.079545, rms=0.432 (0.033%), neg=0, invalid=96777 iter 0, gcam->neg = 1 after 0 iterations, nbhd size=0, neg = 0 0443: dt=0.079545, rms=0.431 (0.041%), neg=0, invalid=96777 0444: dt=0.079545, rms=0.431 (0.043%), neg=0, invalid=96777 iter 0, gcam->neg = 3 after 6 iterations, nbhd size=1, neg = 0 0445: dt=0.079545, rms=0.431 (0.038%), neg=0, invalid=96777 resetting metric properties... setting smoothness coefficient to 2.000 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.428, neg=0, invalid=96777 iter 0, gcam->neg = 503 after 26 iterations, nbhd size=2, neg = 0 0446: dt=0.510574, rms=0.416 (2.625%), neg=0, invalid=96777 iter 0, gcam->neg = 1 after 0 iterations, nbhd size=0, neg = 0 0447: dt=0.001250, rms=0.416 (0.002%), neg=0, invalid=96777 0448: dt=0.001250, rms=0.416 (0.001%), neg=0, invalid=96777 iter 0, gcam->neg = 1 after 0 iterations, nbhd size=0, neg = 0 0449: dt=0.001250, rms=0.416 (0.001%), neg=0, invalid=96777 iter 0, gcam->neg = 2 after 6 iterations, nbhd size=1, neg = 0 0450: dt=0.001250, rms=0.416 (0.001%), neg=0, invalid=96777 0451: dt=0.001250, rms=0.416 (0.002%), neg=0, invalid=96777 0452: dt=0.001250, rms=0.416 (0.002%), neg=0, invalid=96777 0453: dt=0.001250, rms=0.416 (0.003%), neg=0, invalid=96777 0454: dt=0.001250, rms=0.416 (0.003%), neg=0, invalid=96777 0455: dt=0.001250, rms=0.416 (0.004%), neg=0, invalid=96777 0456: dt=0.001250, rms=0.416 (0.004%), neg=0, invalid=96777 iter 0, gcam->neg = 1 after 5 iterations, nbhd size=1, neg = 0 0457: dt=0.001250, rms=0.416 (0.004%), neg=0, invalid=96777 0458: dt=0.001250, rms=0.416 (0.005%), neg=0, invalid=96777 0459: dt=0.001250, rms=0.416 (0.005%), neg=0, invalid=96777 0460: dt=0.001250, rms=0.416 (0.005%), neg=0, invalid=96777 0461: dt=0.001250, rms=0.416 (0.005%), neg=0, invalid=96777 0462: dt=0.001250, rms=0.416 (0.006%), neg=0, invalid=96777 0463: dt=0.001250, rms=0.416 (0.006%), neg=0, invalid=96777 0464: dt=0.001250, rms=0.416 (0.006%), neg=0, invalid=96777 0465: dt=0.001250, rms=0.416 (0.006%), neg=0, invalid=96777 0466: dt=0.001250, rms=0.416 (0.006%), neg=0, invalid=96777 iter 0, gcam->neg = 11 after 9 iterations, nbhd size=1, neg = 0 0467: dt=0.064000, rms=0.416 (0.022%), neg=0, invalid=96777 0468: dt=0.001000, rms=0.416 (0.000%), neg=0, invalid=96777 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.416, neg=0, invalid=96777 iter 0, gcam->neg = 5 after 6 iterations, nbhd size=1, neg = 0 0469: dt=0.007000, rms=0.416 (0.017%), neg=0, invalid=96777 iter 0, gcam->neg = 49 after 17 iterations, nbhd size=2, neg = 0 0470: dt=0.080000, rms=0.415 (0.207%), neg=0, invalid=96777 iter 0, gcam->neg = 1 after 0 iterations, nbhd size=0, neg = 0 0471: dt=0.001750, rms=0.415 (0.004%), neg=0, invalid=96777 0472: dt=0.001750, rms=0.415 (0.005%), neg=0, invalid=96777 iter 0, gcam->neg = 1 after 0 iterations, nbhd size=0, neg = 0 0473: dt=0.001750, rms=0.415 (0.009%), neg=0, invalid=96777 iter 0, gcam->neg = 2 after 6 iterations, nbhd size=1, neg = 0 0474: dt=0.001750, rms=0.415 (0.012%), neg=0, invalid=96777 iter 0, gcam->neg = 2 after 0 iterations, nbhd size=0, neg = 0 0475: dt=0.001750, rms=0.415 (0.016%), neg=0, invalid=96777 iter 0, gcam->neg = 1 after 0 iterations, nbhd size=0, neg = 0 0476: dt=0.001750, rms=0.415 (0.019%), neg=0, invalid=96777 iter 0, gcam->neg = 1 after 0 iterations, nbhd size=0, neg = 0 0477: dt=0.001750, rms=0.415 (0.021%), neg=0, invalid=96777 0478: dt=0.001750, rms=0.415 (0.023%), neg=0, invalid=96777 iter 0, gcam->neg = 1 after 0 iterations, nbhd size=0, neg = 0 0479: dt=0.001750, rms=0.415 (0.025%), neg=0, invalid=96777 0480: dt=0.001750, rms=0.414 (0.027%), neg=0, invalid=96777 0481: dt=0.001750, rms=0.414 (0.028%), neg=0, invalid=96777 0482: dt=0.001750, rms=0.414 (0.029%), neg=0, invalid=96777 0483: dt=0.001750, rms=0.414 (0.030%), neg=0, invalid=96777 0484: dt=0.001750, rms=0.414 (0.030%), neg=0, invalid=96777 0485: dt=0.001750, rms=0.414 (0.031%), neg=0, invalid=96777 iter 0, gcam->neg = 1 after 6 iterations, nbhd size=1, neg = 0 0486: dt=0.001750, rms=0.414 (0.028%), neg=0, invalid=96777 0487: dt=0.001750, rms=0.414 (0.031%), neg=0, invalid=96777 0488: dt=0.001750, rms=0.413 (0.031%), neg=0, invalid=96777 writing output transformation to transforms/talairach.m3z... GCAMwrite registration took 2 hours, 38 minutes and 49 seconds. #-------------------------------------- #@# CA Reg Inv Thu Jun 30 20:26:09 EDT 2016 /usr/local/freesurfer/subjects/test1/mri mri_ca_register -invert-and-save transforms/talairach.m3z Loading, Inverting, Saving, Exiting ... Reading transforms/talairach.m3z Inverting GCAM Saving inverse #-------------------------------------- #@# Remove Neck Thu Jun 30 20:27:25 EDT 2016 mri_remove_neck -radius 25 nu.mgz transforms/talairach.m3z /usr/local/freesurfer/average/RB_all_2008-03-26.gca nu_noneck.mgz erasing everything more than 25 mm from possible brain reading atlas '/usr/local/freesurfer/average/RB_all_2008-03-26.gca'... reading input volume 'nu.mgz'... reading transform 'transforms/talairach.m3z'... removing structures at least 25 mm from brain... 11234047 nonbrain voxels erased writing output to nu_noneck.mgz... nonbrain removal took 1 minutes and 27 seconds. #-------------------------------------- #@# SkullLTA Thu Jun 30 20:28:52 EDT 2016 mri_em_register -skull -t transforms/talairach.lta nu_noneck.mgz /usr/local/freesurfer/average/RB_all_withskull_2008-03-26.gca transforms/talairach_with_skull_2.lta aligning to atlas containing skull, setting unknown_nbr_spacing = 5 using previously computed transform transforms/talairach.lta reading 1 input volumes... logging results to talairach_with_skull_2.log reading '/usr/local/freesurfer/average/RB_all_withskull_2008-03-26.gca'... average std = 23.1 using min determinant for regularization = 53.4 0 singular and 5702 ill-conditioned covariance matrices regularized reading 'nu_noneck.mgz'... freeing gibbs priors...done. bounding unknown intensity as < 20.2 or > 943.7 total sample mean = 92.0 (1443 zeros) ************************************************ spacing=8, using 3481 sample points, tol=1.00e-05... ************************************************ register_mri: find_optimal_transform find_optimal_transform: nsamples 3481, passno 0, spacing 8 resetting wm mean[0]: 117 --> 126 resetting gm mean[0]: 74 --> 74 input volume #1 is the most T1-like using real data threshold=25.0 skull bounding box = (47, 47, 30) --> (203, 216, 233) using (99, 103, 132) as brain centroid... mean wm in atlas = 126, using box (80,82,107) --> (118, 123,157) to find MRI wm before smoothing, mri peak at 104 after smoothing, mri peak at 103, scaling input intensities by 1.223 scaling channel 0 by 1.2233 **************************************** Nine parameter search. iteration 0 nscales = 0 ... **************************************** Result so far: scale 1.000: max_log_p=-4.2, old_max_log_p =-4.1 (thresh=-4.1) 1.019 -0.070 0.017 5.963; 0.073 1.181 -0.109 -26.527; -0.011 0.105 0.997 -29.902; 0.000 0.000 0.000 1.000; reducing scale to 0.2500 **************************************** Nine parameter search. iteration 1 nscales = 1 ... **************************************** Result so far: scale 0.250: max_log_p=-4.2, old_max_log_p =-4.2 (thresh=-4.2) 1.016 -0.109 0.019 11.000; 0.104 1.159 -0.074 -33.687; -0.013 0.065 0.981 -22.542; 0.000 0.000 0.000 1.000; **************************************** Nine parameter search. iteration 2 nscales = 1 ... **************************************** Result so far: scale 0.250: max_log_p=-4.2, old_max_log_p =-4.2 (thresh=-4.2) 1.016 -0.109 0.019 11.000; 0.103 1.161 -0.042 -35.936; -0.017 0.027 0.983 -17.408; 0.000 0.000 0.000 1.000; reducing scale to 0.0625 **************************************** Nine parameter search. iteration 3 nscales = 2 ... **************************************** Result so far: scale 0.062: max_log_p=-4.2, old_max_log_p =-4.2 (thresh=-4.2) 1.017 -0.109 0.019 10.866; 0.104 1.157 -0.082 -31.973; -0.013 0.075 0.983 -24.970; 0.000 0.000 0.000 1.000; **************************************** Nine parameter search. iteration 4 nscales = 2 ... **************************************** Result so far: scale 0.062: max_log_p=-4.2, old_max_log_p =-4.2 (thresh=-4.2) 1.018 -0.109 0.019 10.731; 0.104 1.159 -0.082 -32.152; -0.013 0.075 0.983 -24.970; 0.000 0.000 0.000 1.000; min search scale 0.025000 reached *********************************************** Computing MAP estimate using 3481 samples... *********************************************** dt = 5.00e-06, momentum=0.80, tol=1.00e-05 l_intensity = 1.0000 Aligning input volume to GCA... Transform matrix 1.01829 -0.10879 0.01930 10.73140; 0.10374 1.15865 -0.08206 -32.15164; -0.01265 0.07476 0.98255 -24.97047; 0.00000 0.00000 0.00000 1.00000; nsamples 3481 Quasinewton: input matrix 1.01829 -0.10879 0.01930 10.73140; 0.10374 1.15865 -0.08206 -32.15164; -0.01265 0.07476 0.98255 -24.97047; 0.00000 0.00000 0.00000 1.00000; outof QuasiNewtonEMA: 006: -log(p) = -0.0 tol 0.000010 Resulting transform: 1.018 -0.109 0.019 10.731; 0.104 1.159 -0.082 -32.152; -0.013 0.075 0.983 -24.970; 0.000 0.000 0.000 1.000; pass 1, spacing 8: log(p) = -4.2 (old=-4.1) transform before final EM align: 1.018 -0.109 0.019 10.731; 0.104 1.159 -0.082 -32.152; -0.013 0.075 0.983 -24.970; 0.000 0.000 0.000 1.000; ************************************************** EM alignment process ... Computing final MAP estimate using 382743 samples. ************************************************** dt = 5.00e-06, momentum=0.80, tol=1.00e-07 l_intensity = 1.0000 Aligning input volume to GCA... Transform matrix 1.01829 -0.10879 0.01930 10.73140; 0.10374 1.15865 -0.08206 -32.15164; -0.01265 0.07476 0.98255 -24.97047; 0.00000 0.00000 0.00000 1.00000; nsamples 382743 Quasinewton: input matrix 1.01829 -0.10879 0.01930 10.73140; 0.10374 1.15865 -0.08206 -32.15164; -0.01265 0.07476 0.98255 -24.97047; 0.00000 0.00000 0.00000 1.00000; outof QuasiNewtonEMA: 008: -log(p) = 4.6 tol 0.000000 final transform: 1.018 -0.109 0.019 10.731; 0.104 1.159 -0.082 -32.152; -0.013 0.075 0.983 -24.970; 0.000 0.000 0.000 1.000; writing output transformation to transforms/talairach_with_skull_2.lta... registration took 17 minutes and 52 seconds. #-------------------------------------- #@# SubCort Seg Thu Jun 30 20:46:43 EDT 2016 mri_ca_label -align norm.mgz transforms/talairach.m3z /usr/local/freesurfer/average/RB_all_2008-03-26.gca aseg.auto_noCCseg.mgz sysname Linux hostname xubuntu-VirtualBox machine i686 setenv SUBJECTS_DIR /usr/local/freesurfer/subjects cd /usr/local/freesurfer/subjects/test1/mri mri_ca_label -align norm.mgz transforms/talairach.m3z /usr/local/freesurfer/average/RB_all_2008-03-26.gca aseg.auto_noCCseg.mgz renormalizing sequences with structure alignment, equivalent to: -renormalize -renormalize_mean 0.500 -regularize 0.500 reading 1 input volumes... reading classifier array from /usr/local/freesurfer/average/RB_all_2008-03-26.gca... reading input volume from norm.mgz... average std[0] = 6.9 reading transform from transforms/talairach.m3z... Atlas used for the 3D morph was /usr/local/freesurfer/average/RB_all_2008-03-26.gca average std = 6.9 using min determinant for regularization = 4.7 0 singular and 0 ill-conditioned covariance matrices regularized labeling volume... renormalizing by structure alignment.... renormalizing input #0 gca peak = 0.15151 (27) mri peak = 0.13602 ( 7) Left_Lateral_Ventricle (4): linear fit = 0.22 x + 0.0 (2770 voxels, overlap=0.007) Left_Lateral_Ventricle (4): linear fit = 0.40 x + 0.0 (2770 voxels, peak = 6), gca=10.8 gca peak = 0.14982 (20) mri peak = 0.15308 ( 8) Right_Lateral_Ventricle (43): linear fit = 0.31 x + 0.0 (2878 voxels, overlap=0.007) Right_Lateral_Ventricle (43): linear fit = 0.40 x + 0.0 (2878 voxels, peak = 6), gca=8.0 gca peak = 0.28003 (97) mri peak = 0.09901 (107) Right_Pallidum (52): linear fit = 1.09 x + 0.0 (303 voxels, overlap=0.386) Right_Pallidum (52): linear fit = 1.09 x + 0.0 (303 voxels, peak = 105), gca=105.2 gca peak = 0.18160 (96) mri peak = 0.11949 (107) Left_Pallidum (13): linear fit = 1.10 x + 0.0 (342 voxels, overlap=0.475) Left_Pallidum (13): linear fit = 1.10 x + 0.0 (342 voxels, peak = 105), gca=105.1 gca peak = 0.27536 (62) mri peak = 0.09990 (72) Right_Hippocampus (53): linear fit = 1.11 x + 0.0 (456 voxels, overlap=0.404) Right_Hippocampus (53): linear fit = 1.11 x + 0.0 (456 voxels, peak = 69), gca=68.5 gca peak = 0.32745 (63) mri peak = 0.10335 (72) Left_Hippocampus (17): linear fit = 1.13 x + 0.0 (484 voxels, overlap=0.247) Left_Hippocampus (17): linear fit = 1.13 x + 0.0 (484 voxels, peak = 72), gca=71.5 gca peak = 0.08597 (105) mri peak = 0.09660 (107) Right_Cerebral_White_Matter (41): linear fit = 1.03 x + 0.0 (41921 voxels, overlap=0.608) Right_Cerebral_White_Matter (41): linear fit = 1.03 x + 0.0 (41921 voxels, peak = 109), gca=108.7 gca peak = 0.09209 (106) mri peak = 0.08877 (111) Left_Cerebral_White_Matter (2): linear fit = 1.04 x + 0.0 (34480 voxels, overlap=0.613) Left_Cerebral_White_Matter (2): linear fit = 1.04 x + 0.0 (34480 voxels, peak = 111), gca=110.8 gca peak = 0.07826 (63) mri peak = 0.03767 (80) Left_Cerebral_Cortex (3): linear fit = 1.25 x + 0.0 (34200 voxels, overlap=0.143) Left_Cerebral_Cortex (3): linear fit = 1.25 x + 0.0 (34200 voxels, peak = 78), gca=78.4 gca peak = 0.08598 (64) mri peak = 0.03774 (78) Right_Cerebral_Cortex (42): linear fit = 1.23 x + 0.0 (32944 voxels, overlap=0.075) Right_Cerebral_Cortex (42): linear fit = 1.23 x + 0.0 (32944 voxels, peak = 78), gca=78.4 gca peak = 0.24164 (71) mri peak = 0.17221 (92) Right_Caudate (50): linear fit = 1.25 x + 0.0 (513 voxels, overlap=0.018) Right_Caudate (50): linear fit = 1.25 x + 0.0 (513 voxels, peak = 88), gca=88.4 gca peak = 0.18227 (75) mri peak = 0.13713 (94) Left_Caudate (11): linear fit = 1.21 x + 0.0 (668 voxels, overlap=0.019) Left_Caudate (11): linear fit = 1.21 x + 0.0 (668 voxels, peak = 90), gca=90.4 gca peak = 0.10629 (62) mri peak = 0.07821 (78) Left_Cerebellum_Cortex (8): linear fit = 1.26 x + 0.0 (21413 voxels, overlap=0.001) Left_Cerebellum_Cortex (8): linear fit = 1.26 x + 0.0 (21413 voxels, peak = 78), gca=78.4 gca peak = 0.11668 (59) mri peak = 0.08240 (76) Right_Cerebellum_Cortex (47): linear fit = 1.25 x + 0.0 (22229 voxels, overlap=0.001) Right_Cerebellum_Cortex (47): linear fit = 1.25 x + 0.0 (22229 voxels, peak = 74), gca=74.0 gca peak = 0.17849 (88) mri peak = 0.09314 (93) Left_Cerebellum_White_Matter (7): linear fit = 1.08 x + 0.0 (7945 voxels, overlap=0.722) Left_Cerebellum_White_Matter (7): linear fit = 1.08 x + 0.0 (7945 voxels, peak = 95), gca=94.6 gca peak = 0.16819 (86) mri peak = 0.07247 (91) Right_Cerebellum_White_Matter (46): linear fit = 1.07 x + 0.0 (9568 voxels, overlap=0.897) Right_Cerebellum_White_Matter (46): linear fit = 1.07 x + 0.0 (9568 voxels, peak = 92), gca=91.6 gca peak = 0.41688 (64) mri peak = 0.14474 (72) Left_Amygdala (18): linear fit = 1.11 x + 0.0 (228 voxels, overlap=0.873) Left_Amygdala (18): linear fit = 1.11 x + 0.0 (228 voxels, peak = 71), gca=70.7 gca peak = 0.42394 (62) mri peak = 0.08377 (66) Right_Amygdala (54): linear fit = 1.04 x + 0.0 (189 voxels, overlap=0.914) Right_Amygdala (54): linear fit = 1.04 x + 0.0 (189 voxels, peak = 65), gca=64.8 gca peak = 0.10041 (96) mri peak = 0.09225 (107) Left_Thalamus_Proper (10): linear fit = 1.13 x + 0.0 (4568 voxels, overlap=0.098) Left_Thalamus_Proper (10): linear fit = 1.13 x + 0.0 (4568 voxels, peak = 109), gca=109.0 gca peak = 0.13978 (88) mri peak = 0.11264 (103) Right_Thalamus_Proper (49): linear fit = 1.15 x + 0.0 (3638 voxels, overlap=0.055) Right_Thalamus_Proper (49): linear fit = 1.15 x + 0.0 (3638 voxels, peak = 102), gca=101.6 gca peak = 0.08514 (81) mri peak = 0.08819 (98) Left_Putamen (12): linear fit = 1.16 x + 0.0 (936 voxels, overlap=0.049) Left_Putamen (12): linear fit = 1.16 x + 0.0 (936 voxels, peak = 94), gca=94.4 gca peak = 0.09624 (82) mri peak = 0.09220 (97) Right_Putamen (51): linear fit = 1.18 x + 0.0 (1277 voxels, overlap=0.086) Right_Putamen (51): linear fit = 1.18 x + 0.0 (1277 voxels, peak = 97), gca=97.2 gca peak = 0.07543 (88) mri peak = 0.06015 (93) Brain_Stem (16): linear fit = 1.09 x + 0.0 (12407 voxels, overlap=0.600) Brain_Stem (16): linear fit = 1.09 x + 0.0 (12407 voxels, peak = 95), gca=95.5 gca peak = 0.12757 (95) mri peak = 0.08993 (105) Right_VentralDC (60): linear fit = 1.12 x + 0.0 (1172 voxels, overlap=0.524) Right_VentralDC (60): linear fit = 1.12 x + 0.0 (1172 voxels, peak = 106), gca=105.9 gca peak = 0.17004 (92) mri peak = 0.12716 (109) Left_VentralDC (28): linear fit = 1.12 x + 0.0 (1079 voxels, overlap=0.337) Left_VentralDC (28): linear fit = 1.12 x + 0.0 (1079 voxels, peak = 104), gca=103.5 gca peak = 0.21361 (36) mri peak = 0.22727 (14) gca peak = 0.26069 (23) mri peak = 0.30952 (11) gca peak Unknown = 0.94427 ( 0) gca peak Left_Inf_Lat_Vent = 0.31795 (35) gca peak Third_Ventricle = 0.21361 (36) gca peak Fourth_Ventricle = 0.26069 (23) gca peak CSF = 0.14367 (38) gca peak Left_Accumbens_area = 0.57033 (70) gca peak Left_undetermined = 1.00000 (35) gca peak Left_vessel = 0.65201 (62) gca peak Left_choroid_plexus = 0.09084 (48) gca peak Right_Inf_Lat_Vent = 0.31129 (32) gca peak Right_Accumbens_area = 0.30219 (72) gca peak Right_vessel = 0.83418 (60) gca peak Right_choroid_plexus = 0.10189 (48) gca peak Fifth_Ventricle = 0.72939 (42) gca peak WM_hypointensities = 0.14821 (82) gca peak non_WM_hypointensities = 0.10354 (53) gca peak Optic_Chiasm = 0.34849 (76) not using caudate to estimate GM means estimating mean gm scale to be 1.14 x + 0.0 estimating mean wm scale to be 1.04 x + 0.0 estimating mean csf scale to be 0.40 x + 0.0 saving intensity scales to aseg.auto_noCCseg.label_intensities.txt renormalizing by structure alignment.... renormalizing input #0 gca peak = 0.31600 (11) mri peak = 0.13602 ( 7) Left_Lateral_Ventricle (4): linear fit = 0.52 x + 0.0 (2770 voxels, overlap=0.781) Left_Lateral_Ventricle (4): linear fit = 0.52 x + 0.0 (2770 voxels, peak = 6), gca=5.8 gca peak = 0.29325 ( 9) mri peak = 0.15308 ( 8) Right_Lateral_Ventricle (43): linear fit = 0.76 x + 0.0 (2878 voxels, overlap=0.911) Right_Lateral_Ventricle (43): linear fit = 0.76 x + 0.0 (2878 voxels, peak = 7), gca=6.9 gca peak = 0.21376 (106) mri peak = 0.09901 (107) Right_Pallidum (52): linear fit = 1.00 x + 0.0 (303 voxels, overlap=1.013) Right_Pallidum (52): linear fit = 1.00 x + 0.0 (303 voxels, peak = 105), gca=105.5 gca peak = 0.17393 (106) mri peak = 0.11949 (107) Left_Pallidum (13): linear fit = 1.00 x + 0.0 (342 voxels, overlap=0.900) Left_Pallidum (13): linear fit = 1.00 x + 0.0 (342 voxels, peak = 106), gca=106.0 gca peak = 0.22491 (68) mri peak = 0.09990 (72) Right_Hippocampus (53): linear fit = 1.03 x + 0.0 (456 voxels, overlap=1.000) Right_Hippocampus (53): linear fit = 1.03 x + 0.0 (456 voxels, peak = 70), gca=70.4 gca peak = 0.22860 (72) mri peak = 0.10335 (72) Left_Hippocampus (17): linear fit = 1.00 x + 0.0 (484 voxels, overlap=0.999) Left_Hippocampus (17): linear fit = 1.00 x + 0.0 (484 voxels, peak = 72), gca=71.6 gca peak = 0.08276 (109) mri peak = 0.09660 (107) Right_Cerebral_White_Matter (41): linear fit = 1.00 x + 0.0 (41921 voxels, overlap=0.713) Right_Cerebral_White_Matter (41): linear fit = 1.00 x + 0.0 (41921 voxels, peak = 109), gca=109.0 gca peak = 0.08557 (111) mri peak = 0.08877 (111) Left_Cerebral_White_Matter (2): linear fit = 1.00 x + 0.0 (34480 voxels, overlap=0.754) Left_Cerebral_White_Matter (2): linear fit = 1.00 x + 0.0 (34480 voxels, peak = 111), gca=111.0 gca peak = 0.06420 (78) mri peak = 0.03767 (80) Left_Cerebral_Cortex (3): linear fit = 0.99 x + 0.0 (34200 voxels, overlap=0.844) Left_Cerebral_Cortex (3): linear fit = 0.99 x + 0.0 (34200 voxels, peak = 77), gca=76.8 gca peak = 0.07105 (77) mri peak = 0.03774 (78) Right_Cerebral_Cortex (42): linear fit = 1.01 x + 0.0 (32944 voxels, overlap=0.818) Right_Cerebral_Cortex (42): linear fit = 1.01 x + 0.0 (32944 voxels, peak = 78), gca=78.2 gca peak = 0.19790 (88) mri peak = 0.17221 (92) Right_Caudate (50): linear fit = 1.00 x + 0.0 (513 voxels, overlap=0.989) Right_Caudate (50): linear fit = 1.00 x + 0.0 (513 voxels, peak = 88), gca=88.0 gca peak = 0.13093 (90) mri peak = 0.13713 (94) Left_Caudate (11): linear fit = 1.01 x + 0.0 (668 voxels, overlap=0.807) Left_Caudate (11): linear fit = 1.01 x + 0.0 (668 voxels, peak = 91), gca=91.3 gca peak = 0.08810 (79) mri peak = 0.07821 (78) Left_Cerebellum_Cortex (8): linear fit = 0.99 x + 0.0 (21413 voxels, overlap=0.904) Left_Cerebellum_Cortex (8): linear fit = 0.99 x + 0.0 (21413 voxels, peak = 78), gca=77.8 gca peak = 0.09547 (76) mri peak = 0.08240 (76) Right_Cerebellum_Cortex (47): linear fit = 1.00 x + 0.0 (22229 voxels, overlap=0.909) Right_Cerebellum_Cortex (47): linear fit = 1.00 x + 0.0 (22229 voxels, peak = 76), gca=75.6 gca peak = 0.17137 (94) mri peak = 0.09314 (93) Left_Cerebellum_White_Matter (7): linear fit = 0.99 x + 0.0 (7945 voxels, overlap=0.990) Left_Cerebellum_White_Matter (7): linear fit = 0.99 x + 0.0 (7945 voxels, peak = 93), gca=92.6 gca peak = 0.16064 (92) mri peak = 0.07247 (91) Right_Cerebellum_White_Matter (46): linear fit = 0.98 x + 0.0 (9568 voxels, overlap=0.998) Right_Cerebellum_White_Matter (46): linear fit = 0.98 x + 0.0 (9568 voxels, peak = 90), gca=89.7 gca peak = 0.37857 (70) mri peak = 0.14474 (72) Left_Amygdala (18): linear fit = 1.01 x + 0.0 (228 voxels, overlap=1.018) Left_Amygdala (18): linear fit = 1.01 x + 0.0 (228 voxels, peak = 71), gca=71.0 gca peak = 0.48003 (65) mri peak = 0.08377 (66) Right_Amygdala (54): linear fit = 1.09 x + 0.0 (189 voxels, overlap=1.021) Right_Amygdala (54): linear fit = 1.09 x + 0.0 (189 voxels, peak = 71), gca=70.5 gca peak = 0.09559 (107) mri peak = 0.09225 (107) Left_Thalamus_Proper (10): linear fit = 1.00 x + 0.0 (4568 voxels, overlap=0.890) Left_Thalamus_Proper (10): linear fit = 1.00 x + 0.0 (4568 voxels, peak = 106), gca=106.5 gca peak = 0.09529 (101) mri peak = 0.11264 (103) Right_Thalamus_Proper (49): linear fit = 1.00 x + 0.0 (3638 voxels, overlap=0.866) Right_Thalamus_Proper (49): linear fit = 1.00 x + 0.0 (3638 voxels, peak = 101), gca=101.0 gca peak = 0.09365 (94) mri peak = 0.08819 (98) Left_Putamen (12): linear fit = 1.02 x + 0.0 (936 voxels, overlap=0.829) Left_Putamen (12): linear fit = 1.02 x + 0.0 (936 voxels, peak = 96), gca=96.3 gca peak = 0.09484 (90) mri peak = 0.09220 (97) Right_Putamen (51): linear fit = 1.00 x + 0.0 (1277 voxels, overlap=0.949) Right_Putamen (51): linear fit = 1.00 x + 0.0 (1277 voxels, peak = 90), gca=90.0 gca peak = 0.07332 (96) mri peak = 0.06015 (93) Brain_Stem (16): linear fit = 1.00 x + 0.0 (12407 voxels, overlap=0.815) Brain_Stem (16): linear fit = 1.00 x + 0.0 (12407 voxels, peak = 96), gca=96.5 gca peak = 0.10941 (106) mri peak = 0.08993 (105) Right_VentralDC (60): linear fit = 1.00 x + 0.0 (1172 voxels, overlap=0.767) Right_VentralDC (60): linear fit = 1.00 x + 0.0 (1172 voxels, peak = 107), gca=106.5 gca peak = 0.14243 (104) mri peak = 0.12716 (109) Left_VentralDC (28): linear fit = 1.03 x + 0.0 (1079 voxels, overlap=0.731) Left_VentralDC (28): linear fit = 1.03 x + 0.0 (1079 voxels, peak = 108), gca=107.6 gca peak = 0.35640 (14) mri peak = 0.22727 (14) gca peak = 0.33827 ( 9) mri peak = 0.30952 (11) gca peak Unknown = 0.94427 ( 0) gca peak Left_Inf_Lat_Vent = 0.26012 (40) gca peak Third_Ventricle = 0.35640 (14) gca peak Fourth_Ventricle = 0.33827 ( 9) gca peak CSF = 0.30128 (18) gca peak Left_Accumbens_area = 0.52977 (84) gca peak Left_undetermined = 1.00000 (35) gca peak Left_vessel = 0.63638 (62) gca peak Left_choroid_plexus = 0.09084 (48) gca peak Right_Inf_Lat_Vent = 0.30243 (35) gca peak Right_Accumbens_area = 0.25077 (91) gca peak Right_vessel = 0.83418 (60) gca peak Right_choroid_plexus = 0.10189 (48) gca peak Fifth_Ventricle = 0.45329 (19) gca peak WM_hypointensities = 0.17579 (85) gca peak non_WM_hypointensities = 0.12111 (55) gca peak Optic_Chiasm = 0.34483 (76) not using caudate to estimate GM means estimating mean gm scale to be 1.02 x + 0.0 estimating mean wm scale to be 1.00 x + 0.0 estimating mean csf scale to be 0.64 x + 0.0 Left_Pallidum too bright - rescaling by 1.007 (from 1.000) to 106.7 (was 106.0) saving intensity scales to aseg.auto_noCCseg.label_intensities.txt saving sequentially combined intensity scales to aseg.auto_noCCseg.label_intensities.txt 39018 gm and wm labels changed (%30 to gray, %70 to white out of all changed labels) 549 hippocampal voxels changed. 0 amygdala voxels changed. pass 1: 81981 changed. image ll: -2.645, PF=1.000 pass 2: 14292 changed. image ll: -2.641, PF=1.000 pass 3: 4913 changed. writing labeled volume to aseg.auto_noCCseg.mgz... auto-labeling took 23 minutes and 26 seconds. mri_cc -aseg aseg.auto_noCCseg.mgz -o aseg.auto.mgz -lta /usr/local/freesurfer/subjects/test1/mri/transforms/cc_up.lta test1 will read input aseg from aseg.auto_noCCseg.mgz writing aseg with cc labels to aseg.auto.mgz will write lta as /usr/local/freesurfer/subjects/test1/mri/transforms/cc_up.lta reading aseg from /usr/local/freesurfer/subjects/test1/mri/aseg.auto_noCCseg.mgz reading norm from /usr/local/freesurfer/subjects/test1/mri/norm.mgz 59671 voxels in left wm, 55866 in right wm, xrange [117, 131] searching rotation angles z=[-2 12], y=[-6 8] searching scale 1 Z rot -2.1 searching scale 1 Z rot -1.9 searching scale 1 Z rot -1.6 searching scale 1 Z rot -1.4 searching scale 1 Z rot -1.1 searching scale 1 Z rot -0.9 searching scale 1 Z rot -0.6 searching scale 1 Z rot -0.4 searching scale 1 Z rot -0.1 searching scale 1 Z rot 0.1 searching scale 1 Z rot 0.4 searching scale 1 Z rot 0.6 searching scale 1 Z rot 0.9 searching scale 1 Z rot 1.1 searching scale 1 Z rot 1.4 searching scale 1 Z rot 1.6 searching scale 1 Z rot 1.9 searching scale 1 Z rot 2.1 searching scale 1 Z rot 2.4 searching scale 1 Z rot 2.6 searching scale 1 Z rot 2.9 searching scale 1 Z rot 3.1 searching scale 1 Z rot 3.4 searching scale 1 Z rot 3.6 searching scale 1 Z rot 3.9 searching scale 1 Z rot 4.1 searching scale 1 Z rot 4.4 searching scale 1 Z rot 4.6 searching scale 1 Z rot 4.9 searching scale 1 Z rot 5.1 searching scale 1 Z rot 5.4 searching scale 1 Z rot 5.6 searching scale 1 Z rot 5.9 searching scale 1 Z rot 6.1 searching scale 1 Z rot 6.4 searching scale 1 Z rot 6.6 searching scale 1 Z rot 6.9 searching scale 1 Z rot 7.1 searching scale 1 Z rot 7.4 searching scale 1 Z rot 7.6 searching scale 1 Z rot 7.9 searching scale 1 Z rot 8.1 searching scale 1 Z rot 8.4 searching scale 1 Z rot 8.6 searching scale 1 Z rot 8.9 searching scale 1 Z rot 9.1 searching scale 1 Z rot 9.4 searching scale 1 Z rot 9.6 searching scale 1 Z rot 9.9 searching scale 1 Z rot 10.1 searching scale 1 Z rot 10.4 searching scale 1 Z rot 10.6 searching scale 1 Z rot 10.9 searching scale 1 Z rot 11.1 searching scale 1 Z rot 11.4 global minimum found at slice 123.0, rotations (0.95, 4.62) final transformation (x=123.0, yr=0.952, zr=4.616): 0.997 -0.080 0.017 12.103; 0.080 0.997 0.001 10.291; -0.017 -0.000 1.000 9.061; 0.000 0.000 0.000 1.000; updating x range to be [124, 132] in xformed coordinates best xformed slice 128 cc center is found at 128 162 173 eigenvectors: -0.002 -0.003 1.000; 0.197 -0.980 -0.002; 0.980 0.197 0.003; error in mid anterior detected - correcting... writing aseg with callosum to /usr/local/freesurfer/subjects/test1/mri/aseg.auto.mgz... corpus callosum matter segmentation took 1.0 minutes #-------------------------------------- #@# Merge ASeg Thu Jun 30 21:11:10 EDT 2016 cp aseg.auto.mgz aseg.mgz #-------------------------------------------- #@# ASeg Stats Thu Jun 30 21:11:10 EDT 2016 INFO: mri_segstats will not calculate Supratentorial due to missing ribbon.mgz file INFO: ?h.white surfaces not available to mri_segstats. /usr/local/freesurfer/subjects/test1 mri_segstats --seg mri/aseg.mgz --sum stats/aseg.stats --pv mri/norm.mgz --empty --brainmask mri/brainmask.mgz --brain-vol-from-seg --excludeid 0 --excl-ctxgmwm --subcortgray --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --etiv --ctab /usr/local/freesurfer/ASegStatsLUT.txt --subject test1 $Id: mri_segstats.c,v 1.75.2.9 2013/02/16 00:09:33 greve Exp $ cwd cmdline mri_segstats --seg mri/aseg.mgz --sum stats/aseg.stats --pv mri/norm.mgz --empty --brainmask mri/brainmask.mgz --brain-vol-from-seg --excludeid 0 --excl-ctxgmwm --subcortgray --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --etiv --ctab /usr/local/freesurfer/ASegStatsLUT.txt --subject test1 sysname Linux hostname xubuntu-VirtualBox machine i686 user fsuser UseRobust 0 atlas_icv (eTIV) = 1229222 mm^3 (det: 1.584827 ) MRISread(/usr/local/freesurfer/subjects/test1/surf/lh.white): could not open file Loading mri/aseg.mgz Getting Brain Volume Statistics No such file or directory Linux xubuntu-VirtualBox 3.2.0-23-generic #36-Ubuntu SMP Tue Apr 10 20:41:14 UTC 2012 i686 i686 i386 GNU/Linux recon-all -s test1 exited with ERRORS at Thu Jun 30 21:11:11 EDT 2016 To report a problem, see http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting On Wed, Jun 29, 2016 at 3:29 PM, Bruce Fischl <fischl(a)nmr.mgh.harvard.edu> wrote: > Hi Dorsa > > no, sorry. It's something we have considered and you can see it pretty > well on high res 7T T2* weighted scans, but we haven't had the resources to > pursue it yet. If you wanted to collect 10-20 subjects and manually label > them we could probably use that to bootstrap an automated procedure > > cheers > Bruce > > > > > On Wed, 29 Jun 2016, Dorsa Haji Ghaffari wrote: > > Hi, >> Thanks for the help. I have been studying about the segmentation >> techniques >> of FreeSurfer and I realized it does not label the Sub-thalamic nucleus. >> For >> my purpose, I need to have STN in my patient models. I wanted to ask if >> you >> have any suggestions for me to do that with or without using FreeSurfer? I >> really appreciate your help. >> >> Thank you >> >> Dorsa >> >> On Tue, Jun 28, 2016 at 5:26 PM, Bruce Fischl <fischl(a)nmr.mgh.harvard.edu >> > >> wrote: >> Hi Dorsa >> >> did you look at the 001.mgz? Make sure it is oriented properly. >> That is, make sure that when freeview lists A is in fact >> anterior, etc.... It may be that the dicom conversion failed >> amid all the warnings. >> >> cheers >> Bruce >> On Tue, 28 Jun 2016, Dorsa Haji Ghaffari wrote: >> >> Hi, >> I changed the subjid so it is not the exam same >> code. Sure, here it is: >> >> recon-all -i LT7616_3TS_Copy_0001.dcm -subjid test6 >> -all >> >> >> and here is the log: >> >> Tue Jun 28 16:38:26 EDT 2016 >> /usr/local/freesurfer/subjects/test6 >> /usr/local/freesurfer/bin/recon-all >> -i LT7616_3TS_Copy_0001.dcm -subjid test6 -all >> subjid test6 >> setenv SUBJECTS_DIR /usr/local/freesurfer/subjects >> FREESURFER_HOME /usr/local/freesurfer >> Actual FREESURFER_HOME /usr/local/freesurfer >> build-stamp.txt: >> freesurfer-Linux-centos4-stable-pub-v5.3.0 >> Linux xubuntu-VirtualBox 3.2.0-23-generic #36-Ubuntu >> SMP Tue Apr 10 20:41:14 >> UTC 2012 i686 i686 i386 GNU/Linux >> cputime unlimited >> filesize unlimited >> datasize unlimited >> stacksize 8192 kbytes >> coredumpsize 0 kbytes >> memoryuse unlimited >> vmemoryuse unlimited >> descriptors 1024 >> memorylocked 64 kbytes >> maxproc 5875 >> maxlocks unlimited >> maxsignal 5875 >> maxmessage 819200 >> maxnice 0 >> maxrtprio 0 >> maxrttime unlimited >> >> total used free >> shared buffers cached >> Mem: 766528 488156 278372 >> 0 3716 123344 >> -/+ buffers/cache: 361096 405432 >> Swap: 1944572 133052 1811520 >> >> ######################################## >> program versions used >> $Id: recon-all,v 1.379.2.73 2013/05/12 23:15:37 >> nicks Exp $ >> $Id: mri_motion_correct.fsl,v 1.14 2011/03/02 >> 20:16:39 nicks Exp $ >> mri_convert -all-info >> ProgramName: mri_convert ProgramArguments: >> -all-info ProgramVersion: >> $Name: stable5 $ TimeStamp: >> 2016/06/28-20:38:26-GMT BuildTimeStamp: May 13 >> 2013 18:53:32 CVS: $Id: mri_convert.c,v 1.179.2.7 >> 2012/09/05 21:55:16 >> mreuter Exp $ User: fsuser Machine: >> xubuntu-VirtualBox Platform: Linux >> PlatformVersion: 3.2.0-23-generic CompilerName: >> GCC CompilerVersion: 30400 >> FLIRT version 5.5 >> $Id: talairach_avi,v 1.9 2011/03/02 18:38:06 nicks >> Exp $ >> mri_convert --version >> stable5 >> ProgramName: tkregister2_cmdl ProgramArguments: >> --all-info ProgramVersion: >> $Name: stable5 $ TimeStamp: >> 2016/06/28-20:38:26-GMT BuildTimeStamp: May 13 >> 2013 18:53:32 CVS: $Id: tkregister2.c,v 1.121.2.1 >> 2011/03/28 20:25:16 greve >> Exp $ User: fsuser Machine: xubuntu-VirtualBox >> Platform: Linux >> PlatformVersion: 3.2.0-23-generic CompilerName: >> GCC CompilerVersion: 30400 >> Program nu_correct, built from: >> Package MNI N3, version 1.10, compiled by >> nicks@fishie (i686-pc-linux-gnu) >> on 2010-02-20 at 20:19:13 >> ProgramName: mri_make_uchar ProgramArguments: >> -all-info ProgramVersion: >> $Name: stable5 $ TimeStamp: >> 2016/06/28-20:38:26-GMT BuildTimeStamp: May 13 >> 2013 18:53:32 CVS: $Id: mri_make_uchar.c,v 1.4 >> 2011/03/02 00:04:14 nicks >> Exp $ User: fsuser Machine: xubuntu-VirtualBox >> Platform: Linux >> PlatformVersion: 3.2.0-23-generic CompilerName: >> GCC CompilerVersion: 30400 >> ProgramName: mri_normalize ProgramArguments: >> -all-info ProgramVersion: >> $Name: stable5 $ TimeStamp: >> 2016/06/28-20:38:26-GMT BuildTimeStamp: May 13 >> 2013 18:53:32 CVS: $Id: mri_normalize.c,v 1.73.2.1 >> 2012/10/17 19:11:32 >> nicks Exp $ User: fsuser Machine: >> xubuntu-VirtualBox Platform: Linux >> PlatformVersion: 3.2.0-23-generic CompilerName: >> GCC CompilerVersion: 30400 >> ProgramName: mri_watershed ProgramArguments: >> -all-info ProgramVersion: >> $Name: stable5 $ TimeStamp: >> 2016/06/28-20:38:26-GMT BuildTimeStamp: May 13 >> 2013 18:53:32 CVS: $Id: mri_watershed.cpp,v >> 1.96.2.1 2011/11/08 22:18:44 >> nicks Exp $ User: fsuser Machine: >> xubuntu-VirtualBox Platform: Linux >> PlatformVersion: 3.2.0-23-generic CompilerName: >> GCC CompilerVersion: 30400 >> ProgramName: mri_gcut ProgramArguments: -all-info >> ProgramVersion: $Name: >> stable5 $ TimeStamp: 2016/06/28-20:38:26-GMT >> BuildTimeStamp: May 13 2013 >> 18:53:32 CVS: $Id: mri_gcut.cpp,v 1.14 2011/03/02 >> 00:04:16 nicks Exp $ >> User: fsuser Machine: xubuntu-VirtualBox Platform: >> Linux PlatformVersion: >> 3.2.0-23-generic CompilerName: GCC >> CompilerVersion: 30400 >> ProgramName: mri_segment ProgramArguments: >> -all-info ProgramVersion: >> $Name: stable5 $ TimeStamp: >> 2016/06/28-20:38:26-GMT BuildTimeStamp: May 13 >> 2013 18:53:32 CVS: $Id: mri_segment.c,v 1.40 >> 2011/03/02 00:04:24 nicks Exp >> $ User: fsuser Machine: xubuntu-VirtualBox >> Platform: Linux >> PlatformVersion: 3.2.0-23-generic CompilerName: >> GCC CompilerVersion: 30400 >> ProgramName: mri_label2label ProgramArguments: >> -all-info ProgramVersion: >> $Name: stable5 $ TimeStamp: >> 2016/06/28-20:38:26-GMT BuildTimeStamp: May 13 >> 2013 18:53:32 CVS: $Id: mri_label2label.c,v >> 1.40.2.2 2013/04/02 16:26:15 >> greve Exp $ User: fsuser Machine: >> xubuntu-VirtualBox Platform: Linux >> PlatformVersion: 3.2.0-23-generic CompilerName: >> GCC CompilerVersion: 30400 >> ProgramName: mri_em_register ProgramArguments: >> -all-info ProgramVersion: >> $Name: stable5 $ TimeStamp: >> 2016/06/28-20:38:26-GMT BuildTimeStamp: May 13 >> 2013 18:53:32 CVS: $Id: mri_em_register.c,v >> 1.84.2.3 2013/02/09 00:49:26 >> nicks Exp $ User: fsuser Machine: >> xubuntu-VirtualBox Platform: Linux >> PlatformVersion: 3.2.0-23-generic CompilerName: >> GCC CompilerVersion: 30400 >> ProgramName: mri_ca_normalize ProgramArguments: >> -all-info ProgramVersion: >> $Name: stable5 $ TimeStamp: >> 2016/06/28-20:38:26-GMT BuildTimeStamp: May 13 >> 2013 18:53:32 CVS: $Id: mri_ca_normalize.c,v >> 1.52.2.2 2012/10/17 19:11:32 >> nicks Exp $ User: fsuser Machine: >> xubuntu-VirtualBox Platform: Linux >> PlatformVersion: 3.2.0-23-generic CompilerName: >> GCC CompilerVersion: 30400 >> ProgramName: mri_ca_register ProgramArguments: >> -all-info ProgramVersion: >> $Name: stable5 $ TimeStamp: >> 2016/06/28-20:38:26-GMT BuildTimeStamp: May 13 >> 2013 18:53:32 CVS: $Id: mri_ca_register.c,v >> 1.78.2.3 2013/02/09 00:42:20 >> nicks Exp $ User: fsuser Machine: >> xubuntu-VirtualBox Platform: Linux >> PlatformVersion: 3.2.0-23-generic CompilerName: >> GCC CompilerVersion: 30400 >> ProgramName: mri_ca_label ProgramArguments: >> -all-info ProgramVersion: >> $Name: stable5 $ TimeStamp: >> 2016/06/28-20:38:26-GMT BuildTimeStamp: May 13 >> 2013 18:53:32 CVS: $Id: mri_ca_label.c,v 1.96.2.1 >> 2012/08/28 22:11:20 nicks >> Exp $ User: fsuser Machine: xubuntu-VirtualBox >> Platform: Linux >> PlatformVersion: 3.2.0-23-generic CompilerName: >> GCC CompilerVersion: 30400 >> ProgramName: mri_pretess ProgramArguments: >> -all-info ProgramVersion: >> $Name: stable5 $ TimeStamp: >> 2016/06/28-20:38:26-GMT BuildTimeStamp: May 13 >> 2013 18:53:32 CVS: $Id: mri_pretess.c,v 1.20 >> 2011/03/02 00:04:23 nicks Exp >> $ User: fsuser Machine: xubuntu-VirtualBox >> Platform: Linux >> PlatformVersion: 3.2.0-23-generic CompilerName: >> GCC CompilerVersion: 30400 >> ProgramName: mri_fill ProgramArguments: -all-info >> ProgramVersion: $Name: >> stable5 $ TimeStamp: 2016/06/28-20:38:26-GMT >> BuildTimeStamp: May 13 2013 >> 18:53:32 CVS: $Id: mri_fill.c,v 1.118 2011/03/16 >> 21:23:49 nicks Exp $ >> User: fsuser Machine: xubuntu-VirtualBox Platform: >> Linux PlatformVersion: >> 3.2.0-23-generic CompilerName: GCC >> CompilerVersion: 30400 >> ProgramName: mri_tessellate ProgramArguments: >> -all-info ProgramVersion: >> $Name: stable5 $ TimeStamp: >> 2016/06/28-20:38:26-GMT BuildTimeStamp: May 13 >> 2013 18:53:32 CVS: $Id: mri_tessellate.c,v 1.36 >> 2011/03/02 00:04:25 nicks >> Exp $ User: fsuser Machine: xubuntu-VirtualBox >> Platform: Linux >> PlatformVersion: 3.2.0-23-generic CompilerName: >> GCC CompilerVersion: 30400 >> ProgramName: mri_concatenate_lta ProgramArguments: >> -all-info >> ProgramVersion: $Name: stable5 $ TimeStamp: >> 2016/06/28-20:38:27-GMT >> BuildTimeStamp: May 13 2013 18:53:32 CVS: $Id: >> mri_concatenate_lta.c,v 1.10 >> 2011/03/16 21:23:48 nicks Exp $ User: fsuser >> Machine: xubuntu-VirtualBox >> Platform: Linux PlatformVersion: 3.2.0-23-generic >> CompilerName: GCC >> CompilerVersion: 30400 >> ProgramName: mri_normalize_tp2 ProgramArguments: >> -all-info ProgramVersion: >> $Name: stable5 $ TimeStamp: >> 2016/06/28-20:38:27-GMT BuildTimeStamp: May 13 >> 2013 18:53:32 CVS: $Id: mri_normalize_tp2.c,v 1.8 >> 2011/03/02 00:04:23 nicks >> Exp $ User: fsuser Machine: xubuntu-VirtualBox >> Platform: Linux >> PlatformVersion: 3.2.0-23-generic CompilerName: >> GCC CompilerVersion: 30400 >> ProgramName: mris_smooth ProgramArguments: >> -all-info ProgramVersion: >> $Name: stable5 $ TimeStamp: >> 2016/06/28-20:38:27-GMT BuildTimeStamp: May 13 >> 2013 18:53:32 CVS: $Id: mris_smooth.c,v 1.28 >> 2011/03/02 00:04:34 nicks Exp >> $ User: fsuser Machine: xubuntu-VirtualBox >> Platform: Linux >> PlatformVersion: 3.2.0-23-generic CompilerName: >> GCC CompilerVersion: 30400 >> ProgramName: mris_inflate ProgramArguments: >> -all-info ProgramVersion: >> $Name: stable5 $ TimeStamp: >> 2016/06/28-20:38:27-GMT BuildTimeStamp: May 13 >> 2013 18:53:32 CVS: $Id: mris_inflate.c,v 1.43 >> 2011/03/02 00:04:32 nicks Exp >> $ User: fsuser Machine: xubuntu-VirtualBox >> Platform: Linux >> PlatformVersion: 3.2.0-23-generic CompilerName: >> GCC CompilerVersion: 30400 >> ProgramName: mris_curvature ProgramArguments: >> -all-info ProgramVersion: >> $Name: stable5 $ TimeStamp: >> 2016/06/28-20:38:27-GMT BuildTimeStamp: May 13 >> 2013 18:53:32 CVS: $Id: mris_curvature.c,v 1.31 >> 2011/03/02 00:04:30 nicks >> Exp $ User: fsuser Machine: xubuntu-VirtualBox >> Platform: Linux >> PlatformVersion: 3.2.0-23-generic CompilerName: >> GCC CompilerVersion: 30400 >> ProgramName: mris_sphere ProgramArguments: >> -all-info ProgramVersion: >> $Name: stable5 $ TimeStamp: >> 2016/06/28-20:38:27-GMT BuildTimeStamp: May 13 >> 2013 18:53:32 CVS: $Id: mris_sphere.c,v 1.57 >> 2011/03/02 00:04:34 nicks Exp >> $ User: fsuser Machine: xubuntu-VirtualBox >> Platform: Linux >> PlatformVersion: 3.2.0-23-generic CompilerName: >> GCC CompilerVersion: 30400 >> ProgramName: mris_fix_topology ProgramArguments: >> -all-info ProgramVersion: >> $Name: stable5 $ TimeStamp: >> 2016/06/28-20:38:27-GMT BuildTimeStamp: May 13 >> 2013 18:53:32 CVS: $Id: mris_fix_topology.c,v 1.48 >> 2011/03/02 00:04:32 >> nicks Exp $ User: fsuser Machine: >> xubuntu-VirtualBox Platform: Linux >> PlatformVersion: 3.2.0-23-generic CompilerName: >> GCC CompilerVersion: 30400 >> ProgramName: mris_topo_fixer ProgramArguments: >> -all-info ProgramVersion: >> $Name: stable5 $ TimeStamp: >> 2016/06/28-20:38:27-GMT BuildTimeStamp: May 13 >> 2013 18:53:32 CVS: $Id: mris_topo_fixer.cpp,v 1.29 >> 2011/03/02 00:04:34 >> nicks Exp $ User: fsuser Machine: >> xubuntu-VirtualBox Platform: Linux >> PlatformVersion: 3.2.0-23-generic CompilerName: >> GCC CompilerVersion: 30400 >> ProgramName: mris_ca_label ProgramArguments: >> -all-info ProgramVersion: >> $Name: stable5 $ TimeStamp: >> 2016/06/28-20:38:27-GMT BuildTimeStamp: May 13 >> 2013 18:53:32 CVS: $Id: mris_ca_label.c,v 1.35 >> 2011/03/02 00:04:27 nicks >> Exp $ User: fsuser Machine: xubuntu-VirtualBox >> Platform: Linux >> PlatformVersion: 3.2.0-23-generic CompilerName: >> GCC CompilerVersion: 30400 >> ProgramName: mris_euler_number ProgramArguments: >> -all-info ProgramVersion: >> $Name: stable5 $ TimeStamp: >> 2016/06/28-20:38:27-GMT BuildTimeStamp: May 13 >> 2013 18:53:32 CVS: $Id: mris_euler_number.c,v >> 1.8.2.2 2013/01/14 22:40:07 >> greve Exp $ User: fsuser Machine: >> xubuntu-VirtualBox Platform: Linux >> PlatformVersion: 3.2.0-23-generic CompilerName: >> GCC CompilerVersion: 30400 >> ProgramName: mris_make_surfaces ProgramArguments: >> -all-info >> ProgramVersion: $Name: stable5 $ TimeStamp: >> 2016/06/28-20:38:27-GMT >> BuildTimeStamp: May 13 2013 18:53:32 CVS: $Id: >> mris_make_surfaces.c,v >> 1.127.2.6 2013/05/12 22:28:01 nicks Exp $ User: >> fsuser Machine: >> xubuntu-VirtualBox Platform: Linux >> PlatformVersion: 3.2.0-23-generic >> CompilerName: GCC CompilerVersion: 30400 >> ProgramName: mris_register ProgramArguments: >> -all-info ProgramVersion: >> $Name: stable5 $ TimeStamp: >> 2016/06/28-20:38:27-GMT BuildTimeStamp: May 13 >> 2013 18:53:32 CVS: $Id: mris_register.c,v 1.59 >> 2011/03/02 00:04:33 nicks >> Exp $ User: fsuser Machine: xubuntu-VirtualBox >> Platform: Linux >> PlatformVersion: 3.2.0-23-generic CompilerName: >> GCC CompilerVersion: 30400 >> ProgramName: mris_volmask ProgramArguments: >> --all-info ProgramVersion: >> $Name: stable5 $ TimeStamp: >> 2016/06/28-20:38:27-GMT BuildTimeStamp: May 13 >> 2013 18:53:32 CVS: $Id: mris_volmask.cpp,v 1.25 >> 2011/03/02 00:04:34 nicks >> Exp $ User: fsuser Machine: xubuntu-VirtualBox >> Platform: Linux >> PlatformVersion: 3.2.0-23-generic CompilerName: >> GCC CompilerVersion: 30400 >> ProgramName: mris_anatomical_stats >> ProgramArguments: -all-info >> ProgramVersion: $Name: stable5 $ TimeStamp: >> 2016/06/28-20:38:27-GMT >> BuildTimeStamp: May 13 2013 18:53:32 CVS: $Id: >> mris_anatomical_stats.c,v >> 1.72 2011/03/02 00:04:26 nicks Exp $ User: fsuser >> Machine: >> xubuntu-VirtualBox Platform: Linux >> PlatformVersion: 3.2.0-23-generic >> CompilerName: GCC CompilerVersion: 30400 >> ProgramName: mrisp_paint ProgramArguments: >> -all-info ProgramVersion: >> $Name: stable5 $ TimeStamp: >> 2016/06/28-20:38:27-GMT BuildTimeStamp: May 13 >> 2013 18:53:32 CVS: $Id: mrisp_paint.c,v 1.11 >> 2011/03/02 00:04:35 nicks Exp >> $ User: fsuser Machine: xubuntu-VirtualBox >> Platform: Linux >> PlatformVersion: 3.2.0-23-generic CompilerName: >> GCC CompilerVersion: 30400 >> ProgramName: mris_curvature_stats ProgramArguments: >> -all-info >> ProgramVersion: $Name: stable5 $ TimeStamp: >> 2016/06/28-20:38:27-GMT >> BuildTimeStamp: May 13 2013 18:53:32 CVS: $Id: >> mris_curvature_stats.c,v >> 1.64 2011/03/02 00:04:30 nicks Exp $ User: fsuser >> Machine: >> xubuntu-VirtualBox Platform: Linux >> PlatformVersion: 3.2.0-23-generic >> CompilerName: GCC CompilerVersion: 30400 >> ProgramName: mris_calc ProgramArguments: -all-info >> ProgramVersion: $Name: >> stable5 $ TimeStamp: 2016/06/28-20:38:27-GMT >> BuildTimeStamp: May 13 2013 >> 18:53:32 CVS: $Id: mris_calc.c,v 1.37.2.8 >> 2013/01/28 17:05:17 greve Exp $ >> User: fsuser Machine: xubuntu-VirtualBox Platform: >> Linux PlatformVersion: >> 3.2.0-23-generic CompilerName: GCC >> CompilerVersion: 30400 >> $Id: mri_robust_register.cpp,v 1.52.2.3 2012/11/20 >> 17:26:47 mreuter Exp $ >> >> ProgramName: mri_robust_register ProgramArguments: >> -all-info >> ProgramVersion: $Name: stable5 $ TimeStamp: >> 2016/06/28-20:38:27-GMT >> BuildTimeStamp: May 13 2013 18:53:32 CVS: $Id: >> mri_robust_register.cpp,v >> 1.52.2.3 2012/11/20 17:26:47 mreuter Exp $ User: >> fsuser Machine: >> xubuntu-VirtualBox Platform: Linux >> PlatformVersion: 3.2.0-23-generic >> CompilerName: GCC CompilerVersion: 30400 >> $Id: mri_robust_template.cpp,v 1.37.2.2 2012/10/10 >> 19:59:06 mreuter Exp $ >> >> ProgramName: mri_robust_template ProgramArguments: >> -all-info >> ProgramVersion: $Name: stable5 $ TimeStamp: >> 2016/06/28-20:38:27-GMT >> BuildTimeStamp: May 13 2013 18:53:32 CVS: $Id: >> mri_robust_template.cpp,v >> 1.37.2.2 2012/10/10 19:59:06 mreuter Exp $ User: >> fsuser Machine: >> xubuntu-VirtualBox Platform: Linux >> PlatformVersion: 3.2.0-23-generic >> CompilerName: GCC CompilerVersion: 30400 >> ProgramName: mri_and ProgramArguments: -all-info >> ProgramVersion: $Name: >> stable5 $ TimeStamp: 2016/06/28-20:38:27-GMT >> BuildTimeStamp: May 13 2013 >> 18:53:32 CVS: $Id: mri_and.c,v 1.4 2011/03/02 >> 00:04:13 nicks Exp $ User: >> fsuser Machine: xubuntu-VirtualBox Platform: >> Linux PlatformVersion: >> 3.2.0-23-generic CompilerName: GCC >> CompilerVersion: 30400 >> ProgramName: mri_or ProgramArguments: -all-info >> ProgramVersion: $Name: >> stable5 $ TimeStamp: 2016/06/28-20:38:27-GMT >> BuildTimeStamp: May 13 2013 >> 18:53:32 CVS: $Id: mri_or.c,v 1.3 2011/03/02 >> 00:04:13 nicks Exp $ User: >> fsuser Machine: xubuntu-VirtualBox Platform: >> Linux PlatformVersion: >> 3.2.0-23-generic CompilerName: GCC >> CompilerVersion: 30400 >> ProgramName: mri_fuse_segmentations >> ProgramArguments: -all-info >> ProgramVersion: $Name: stable5 $ TimeStamp: >> 2016/06/28-20:38:27-GMT >> BuildTimeStamp: May 13 2013 18:53:32 CVS: $Id: >> mri_fuse_segmentations.c,v >> 1.8 2011/03/02 00:04:15 nicks Exp $ User: fsuser >> Machine: >> xubuntu-VirtualBox Platform: Linux >> PlatformVersion: 3.2.0-23-generic >> CompilerName: GCC CompilerVersion: 30400 >> ProgramName: mri_segstats ProgramArguments: >> -all-info ProgramVersion: >> $Name: stable5 $ TimeStamp: >> 2016/06/28-20:38:28-GMT BuildTimeStamp: May 13 >> 2013 18:53:32 CVS: $Id: mri_segstats.c,v 1.75.2.9 >> 2013/02/16 00:09:33 greve >> Exp $ User: fsuser Machine: xubuntu-VirtualBox >> Platform: Linux >> PlatformVersion: 3.2.0-23-generic CompilerName: >> GCC CompilerVersion: 30400 >> ####################################### >> GCADIR /usr/local/freesurfer/average >> GCA RB_all_2008-03-26.gca >> GCASkull RB_all_withskull_2008-03-26.gca >> AvgCurvTif average.curvature.filled.buckner40.tif >> GCSDIR /usr/local/freesurfer/average >> GCS >> curvature.buckner40.filled.desikan_killiany.2010-03-25.gcs >> ####################################### >> /usr/local/freesurfer/subjects/test6 >> >> mri_convert /home/fsuser/LT7616_3TS_Copy_0001.dcm >> /usr/local/freesurfer/subjects/test6/mri/orig/001.mgz >> >> mri_convert /home/fsuser/LT7616_3TS_Copy_0001.dcm >> /usr/local/freesurfer/subjects/test6/mri/orig/001.mgz >> $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 >> mreuter Exp $ >> reading from >> /home/fsuser/LT7616_3TS_Copy_0001.dcm... >> Starting DICOMRead2() >> dcmfile = /home/fsuser/LT7616_3TS_Copy_0001.dcm >> dcmdir = /home/fsuser >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0001.dcm >> Ref Series No = 602 >> Found 287 files, checking for dicoms >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0001.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0002.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0003.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0004.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0005.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0006.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0007.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0008.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0009.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0010.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0011.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0012.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0013.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0014.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0015.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0016.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0017.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0018.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0019.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0020.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0021.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0022.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0023.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0024.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0025.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0026.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0027.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0028.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0029.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0030.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0031.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0032.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0033.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0034.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0035.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0036.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0037.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0038.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0039.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0040.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0041.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0042.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0043.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0044.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0045.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0046.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0047.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0048.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0049.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0050.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0051.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0052.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0053.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0054.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0055.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0056.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0057.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0058.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0059.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0060.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0061.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0062.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0063.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0064.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0065.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0066.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0067.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0068.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0069.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0070.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0071.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0072.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0073.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0074.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0075.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0076.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0077.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0078.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0079.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0080.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0081.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0082.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0083.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0084.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0085.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0086.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0087.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0088.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0089.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0090.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0091.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0092.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0093.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0094.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0095.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0096.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0097.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0098.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0099.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0100.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0101.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0102.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0103.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0104.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0105.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0106.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0107.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0108.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0109.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0110.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0111.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0112.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0113.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0114.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0115.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0116.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0117.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0118.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0119.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0120.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0121.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0122.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0123.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0124.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0125.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0126.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0127.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0128.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0129.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0130.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0131.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0132.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0133.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0134.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0135.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0136.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0137.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0138.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0139.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0140.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0141.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0142.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0143.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0144.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0145.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0146.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0147.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0148.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0149.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0150.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0151.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0152.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0153.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0154.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0155.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0156.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0157.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0158.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0159.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0160.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0161.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0162.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0163.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0164.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0165.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0166.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0167.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0168.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0169.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0170.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0171.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0172.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0173.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0174.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0175.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0176.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0177.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0178.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0179.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0180.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0181.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0182.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0183.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0184.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0185.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0186.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0187.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0188.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0189.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0190.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0191.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0192.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0193.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0194.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0195.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0196.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0197.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0198.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0199.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0200.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0201.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0202.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0203.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0204.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0205.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0206.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0207.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0208.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0209.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0210.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0211.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0212.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0213.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0214.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0215.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0216.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0217.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0218.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0219.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0220.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0221.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0222.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0223.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0224.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0225.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0226.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0227.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0228.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0229.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0230.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0231.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0232.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0233.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0234.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0235.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0236.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0237.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0238.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0239.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0240.dcm >> Found 240 dicom files in series. >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0001.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0002.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0003.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0004.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0005.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0006.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0007.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0008.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0009.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0010.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0011.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0012.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0013.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0014.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0015.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0016.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0017.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0018.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0019.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0020.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0021.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0022.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0023.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0024.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0025.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0026.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0027.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0028.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0029.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0030.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0031.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0032.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0033.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0034.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0035.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0036.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0037.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0038.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0039.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0040.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0041.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0042.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0043.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0044.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0045.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0046.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0047.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0048.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0049.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0050.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0051.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0052.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0053.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0054.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0055.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0056.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0057.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0058.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0059.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0060.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0061.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0062.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0063.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0064.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0065.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0066.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0067.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0068.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0069.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0070.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0071.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0072.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0073.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0074.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0075.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0076.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0077.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0078.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0079.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0080.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0081.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0082.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0083.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0084.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0085.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0086.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0087.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0088.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0089.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0090.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0091.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0092.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0093.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0094.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0095.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0096.dcm >> WARNING: tag ImageNumber not found in >> /home/fsuser/LT7616_3TS_Copy_0097.dcm >> WARNING: tag ImageNumber not found in > >

1 0

TRACULA problems
by Koubiyr, Ismail 01 Jul '16

01 Jul '16

Hi everyone, It’s been two weeks that I’ve been facing some issues with Tracula. I hope you could help me with that. I run trac-all -prep -c on some DICOM files but I had the following error : WARNING: file /Users/ismailkoubiyr/Documents/PFE/Tracula/dti/SER_5/MR.1.2.826.0.1.3680043.6.8878.22551.20150806120704.648.1017 does not contain a Siemens ASCII header has this file been anonymized? ERROR: cannot unpack mosiacs without ASCII header I also tried to de-mosiac the DICOMs, it gave me the same error. Then I converted the DICOMs into NIFTI, which allowed me not to get this error but something else weird happened. Now I get : ERROR: fMRIframe: frame >= nframes I checked the bvecs and bvals files, they seem normal, no additional space, but when the new bvecs and bvals are created, they seem messed up. I will attach you all the bvecs and bvals I used and the ones I get too. Ideally, the DICOMs should work fine but I have no idea why I get these errors. The bvecs and bvals are obtained from dcm2nii and then corrected to avoid any additional space. Thank you in advance for your help. Best, Ismail P.S : 3T2_bvecs.txt and 3T2_bvals.txt are the original files used.

1 0

dynamic monitor: freesurfer jobs on the Open Science Grid
by Krieger, Donald N. 01 Jul '16

01 Jul '16

For those who are interested, we have deployed a crude dynamic monitor for freesurfer jobs running on the Open Science Grid. It can be viewed at http://xd-login.opensciencegrid.org/scratch/donkri/fsurfPoll.html . The display information is in addition to that which is currently accessible via "fsurf list" . Each job runs in a sequence of three steps. The second step runs in parallel as two separate OSG jobs. These are your "recon-all -autorecon2" jobs. At the lower right corner of the webpage, the number of jobs for each user at each step is listed. Best - Don

1 0

Intensity normalization issues leading to improper segmentation
by Elodie Cauvet 01 Jul '16

01 Jul '16

Dear Freesurfer list, Maybe I am hoping for a miracle with my question, but I am bit desperate after unsuccessfully trying things around for over a year. In a nutshell, I need advice on the intensity normalization options. We have T1 data from twins (8-25years) acquired on a 3T MR750 GE scanner with a 32 channel coil (IR-FSPGR 3D volume). This coil has a huge problem in a field inhomogeneity resulting in strong occipital hypersignal and frontal hyposignal, from which I believe all my problems originate. - The standard pipeline provide an incomplete temporal and frontal segmentation (white and pial surfaces do not include enough) while over including in occipital and parietal. - We tried using the watershed 40 value from the skulltrip to get more of the occipital (we had a few subjects having holes in occipital within the brain segmentation). This option changed also the segmentation resulting in better segmentation for temporal and frontal but worse in parietal and occipital. - We tried control points as well, without success (as you can imagine due to the fronto-occipital inhomogeneity). We also tried manually removing extra voxels from the white surface to correct it. But unfortunately, this is not an option because we have about 200 scans to process. - We tried using N4 intensity bias correction on the raw images before feeding it to freesurfer, but the segmentation did not run through for all participants (stuck in fixing topology for more than a week) and for those working, the pial surface did not include enough grey matter. I am now thinking about playing with the option of intensity normalization (mri_ca_normalize) within freesurfer but would like to have your expert opinion on that before roaming. Any advice on how to set up mri_ca_normalize to retrieve a good white matter homogeneity? Or any other functions I should be playing around with? Thanks a lot in advance for your help, Kind regards, Élodie Élodie CAUVET | PhD Karolinska Institutet Center of Neurodevelopmental Disorders (KIND) Gävlegatan 22B, floor 8 | 113 30 Stockholm +46 (0)8 514 527 10 | +46 (0)728 774 058 elodie<https://email.ki.se/owa/redir.aspx?C=IoHR3hOTXk-47Iiqw9Fmhe3QF6jM79EIy3qtnp…>.cauvet(a)ki.se<https://email.ki.se/owa/redir.aspx?C=IoHR3hOTXk-47Iiqw9Fmhe3QF6jM79EIy3qtnp…> http://ki.se/en/kind/startpage<https://email.ki.se/owa/redir.aspx?C=IoHR3hOTXk-47Iiqw9Fmhe3QF6jM79EIy3qtnp…> http://elodiecauvet.wordpress.com/<https://email.ki.se/owa/redir.aspx?C=IoHR3hOTXk-47Iiqw9Fmhe3QF6jM79EIy3qtnp…> Karolinska Institutet – a medical university

2 2

Re: [Freesurfer] FSFAST- Cerebellum
by Thomas Yeo 01 Jul '16

01 Jul '16

Hi Sabin, The idea is to use the freesurfer left and right cerebellar masks to make the Buckner parcellation. Your steps seem roughly correct but the names of your variables seem to change from one section to another, so I can't be sure. Regards, Thomas On Friday, 1 July 2016, Sabin Khadka <mr.sabinkhadka(a)gmail.com> wrote: > Hi Thomas- Thanks for reply. > > Sorry for not being clear on the previous email. I want extract values > from Buckner et al 2011 defined 7 regions (network) for left and right > hemisphere separately. Wondering if I am in correct direction if I do > **** > mri_binarize --i FSSub/mri/aparc.a2009s+aseg.mgz --match 8 --o > cerebellum_left_mask_FSSub.nii.gz : For left regions > & > mri_binarize --i FSSub/mri/aparc.a2009s+aseg.mgz --match 47 --o > cerebellum_right_mask_FSSub.nii.gz : For right regions > ***** > fslmaths Buckner2011_atlas_FSSub.nii.gz -mas > cerebellum_mask_FSSub_m8.nii.gz Buckner_atlas_FSSub_m8 # For left > fslmaths Buckner2011_atlas_FSSub.nii.gz -mas > cerebellum_mask_FSSub_m47.nii.gz Buckner_atlas_FSSub_m47 # For right > ***** > and use > mri_segstats --seg Buckner_atlas_FSSub_m8.nii.gz --ctab > $FREESURFER_HOME/average/YeoJNeurophysiol11_MNI152/Yeo2011_7Networks_ColorLUT.txt > --excludeid 0 --i fmcpr.anat.nii.gz --avgwf Cerebellum_networks_L.txt > mri_segstats --seg Buckner_atlas_FSSub_m47.nii.gz --ctab > $FREESURFER_HOME/average/YeoJNeurophysiol11_MNI152/Yeo2011_7Networks_ColorLUT.txt > --excludeid 0 --i fmcpr.anat.nii.gz --avgwf Cerebellum_networks_R.txt > > to extract values. > > Again, thanks for all your help and input. > > Cheers, > Sabin Khadka > > On Thu, Jun 30, 2016 at 3:40 PM, Thomas Yeo <ythomas(a)csail.mit.edu > <javascript:_e(%7B%7D,'cvml','ythomas(a)csail.mit.edu');>> wrote: > >> Hi Sabin, >> >> You can try to combine with FreeSurfer's segmentation of left and right >> cerebellum. >> >> --Thomas >> >> On Thu, Jun 30, 2016 at 7:59 PM, Sabin Khadka <mr.sabinkhadka(a)gmail.com >> <javascript:_e(%7B%7D,'cvml','mr.sabinkhadka(a)gmail.com');>> wrote: >> >>> Hi Thomas, >>> >>> Yes, I think I got it working. I forgot to put --seg in my command line >>> which is my the ERROR: segmentation volume needed to be specified error. I >>> did following and gave me average time series from each region (or Network) >>> mri_segstats --seg Buckner_atlas_FSSub.nii.gz --ctab >>> $FREESURFER_HOME/average/YeoJNeurophysiol11_MNI152/Yeo2011_17Networks_ColorLUT.txt >>> --excludeid 0 --i fmcpr.anat.nii.gz --avgwf test.txt >>> >>> >>> Yes, I did overlay Buckner_atlas_FSSub.nii.gz over subject's >>> aparc.a2009s+aseg.mgz and I assumed it looked fine. Please see below for >>> freeview screenshot below (with and without overlay) >>> >>> However, I have a followup question. If I want to get the network values >>> separately for >>> >>> mri_binarize --i FSSub/mri/aparc.a2009s+aseg.mgz --match 8 --o >>> cerebellum_left_mask_FSSub.nii.gz : For left regions >>> & >>> mri_binarize --i FSSub/mri/aparc.a2009s+aseg.mgz --match 47 --o >>> cerebellum_right_mask_FSSub.nii.gz : For right regions >>> >>> and follow other steps for each mask? >>> >>> >>> >>> >>> without overlay >>> >>> [image: Inline image 1] >>> with overlay >>> >>> [image: Inline image 2] >>> >>> >>> Thanks for your help. >>> >>> >>> Cheers, >>> Sabin Khadka >>> >>> On Thu, Jun 30, 2016 at 11:29 AM, Thomas Yeo <ythomas(a)csail.mit.edu >>> <javascript:_e(%7B%7D,'cvml','ythomas(a)csail.mit.edu');>> wrote: >>> >>>> Hi Sabin, >>>> >>>> I think fslmeants should work. But you might need to first run >>>> mri_binarize to convert Buckner_atlas_FSSub.nii.gz into individual >>>> ROIs. >>>> >>>> Also can you tell us which step generated the error "ERROR: must >>>> specify a segmentation volume"? Is this the final step? Have you tried >>>> overlaying Buckner_atlas_FSSub.nii.gz onto your individual subject in >>>> freeview to check that the previous steps have worked? >>>> >>>> Thanks, >>>> Thomas >>>> >>>> On Mon, Jun 27, 2016 at 6:53 PM, Sabin Khadka <mr.sabinkhadka(a)gmail.com >>>> <javascript:_e(%7B%7D,'cvml','mr.sabinkhadka(a)gmail.com');>> wrote: >>>> > Hi Thomas- On second thought is it valid to simply do if I want >>>> average time >>>> > series of the cerebellum regions? >>>> > >>>> > fslmeants -i fmcpr.anat.nii.gz -m Buckner_atlas_FSSub.nii.gz >> >>>> > avgCerebellum.txt >>>> > >>>> > Is this correct? >>>> > >>>> > >>>> > Cheers, >>>> > Sabin Khadka >>>> > >>>> > On Mon, Jun 27, 2016 at 11:36 AM, Sabin Khadka < >>>> mr.sabinkhadka(a)gmail.com >>>> <javascript:_e(%7B%7D,'cvml','mr.sabinkhadka(a)gmail.com');>> >>>> > wrote: >>>> >> >>>> >> Hi Thomas and Doug- >>>> >> >>>> >> Thanks for you suggestions. Per your suggestions I performed >>>> following >>>> >> >>>> >> recon-all -i >>>> >> >>>> $FREESURFER_HOME/average/Yeo_JNeurophysiol11_MNI152/FSL_MNI152_FreeSurferConformed_1mm.nii.gz >>>> >> -subjid Yeo2011_MNI152_FS >>>> >> >>>> >> recon-all -no-isrunning -autorecon-all -subjid Yeo2011_MNI152_FS >>>> >> >>>> >> mri_vol2vol --mov >>>> >> >>>> $FREESURFER_HOME/average/Buckner_JNeurophysiol11_MNI152/Buckner2011_17Networks_MNI152_FreeSurferConformed1mm_LooseMask.nii.gz >>>> >> \ >>>> >> --s Yeo2011_MNI152_FS --targ $FREESURFER_HOME/average/mni305.cor.mgz >>>> --m3z >>>> >> talairach.m3z --o BucknerAtlas1mm_FSL.nii.gz --nearest >>>> >> >>>> >> mri_vol2vol --mov $SUBJECTS_DIR/FSSub/mri/norm.mgz --s FSSub --targ >>>> >> BucknerAtlas1mm_FSL.nii.gz --m3z talairach.m3z --o >>>> >> Buckner2011_atlas_FSSub.nii.gz --nearest --inv-morph >>>> >> >>>> >> mri_binarize --i FSSub/mri/aparc.a2009s+aseg.mgz --match 8 --match >>>> 47 --o >>>> >> cerebellum_mask_FSSub.nii.gz >>>> >> >>>> >> fslmaths Buckner2011_atlas_FSSub.nii.gz -mas >>>> cerebellum_mask_FSSub.nii.gz >>>> >> Buckner_atlas_FSSub >>>> >> >>>> >> mri_vol2vol --mov fmcpr.nii.gz --fstarg --reg register.dof6.dat --o >>>> >> fmcpr.anat.nii.gz >>>> >> >>>> >> mri_segstats --i Buckner_atlas_FSSub.nii.gz --i fmcpr.anat.nii.gz >>>> --avgwf >>>> >> test.txt >>>> >> >>>> >> However, I got the following error >>>> >> ERROR: must specify a segmentation volume >>>> >> >>>> >> Am I doing anything wrong here. Do you have any suggestions/fixes? >>>> >> >>>> >> >>>> >> Cheers, >>>> >> Sabin Khadka >>>> >> >>>> >> On Fri, Jun 24, 2016 at 6:30 AM, Thomas Yeo <ythomas(a)csail.mit.edu >>>> <javascript:_e(%7B%7D,'cvml','ythomas(a)csail.mit.edu');>> wrote: >>>> >>> >>>> >>> Hi Doug, thanks. >>>> >>> >>>> >>> Hi Sabin, you can use the following steps to transform the Buckner >>>> >>> cerebellum atlas to your subject's native anatomical space and then >>>> >>> follow Doug's instructions (taken and adapted from another user >>>> >>> Bronwyn's email): >>>> >>> >>>> >>> 1. Run MNI152 1mm template through recon-all >>>> >>> recon-all -i FSL_MNI152_FreeSurferConformed_1mm.nii -subjid >>>> >>> Yeo2011_MNI152_FS >>>> >>> >>>> >>> 2. Warp the Buckner_atlas1mm.nii.gz (use the LooseMask) to >>>> freesurfer >>>> >>> nonlinear volumetric space >>>> >>> mri_vol2vol --mov BucknerAtlas1mm.nii --s Yeo2011_MNI152_FS --targ >>>> >>> $FREESURFER_HOME/average/mni305.cor.mgz --m3z talairach.m3z --o >>>> >>> BucknerAtlas1mm_FSI.nii.gz --nearest >>>> >>> >>>> >>> 3. warp the BucknerAtlas1mm_FSI.nii.gz from freesurfer nonlinear >>>> >>> volumetric space to each subject: >>>> >>> mri_vol2vol --mov $SUBJECTS_DIR/subjID/mri/norm.mgz --s subjID >>>> --targ >>>> >>> BucknerAtlas1mm_FSI.nii.gz --m3z talairach.m3z --o >>>> >>> Buckner2011_atlas_subjID.nii.gz --nearest --inv-morph >>>> >>> >>>> >>> 4. Create a cerebellum gray matter mask in the native subject's >>>> space >>>> >>> by applying mri_binarize to aparc+aseg.mgz of the subject >>>> >>> mri_binarize --i subjID/mri/aparc+aseg.mgz --match 8 --match 47 --o >>>> >>> cerebellum_mask_subjID.nii.gz >>>> >>> >>>> >>> 5. Using this mask to mask the Buckner cerebellum parcellations >>>> >>> fslmaths Buckner2011_atlas_subjID.nii.gz -mas >>>> >>> cerebellum_mask_subjID.nii.gz Buckner_atlas_subjID_mask.nii.gz >>>> >>> >>>> >>> Regards, >>>> >>> Thomas >>>> >>> >>>> >>> On Fri, Jun 24, 2016 at 4:47 PM, Douglas Greve >>>> >>> <greve(a)nmr.mgh.harvard.edu >>>> <javascript:_e(%7B%7D,'cvml','greve(a)nmr.mgh.harvard.edu');>> wrote: >>>> >>> > yes >>>> >>> > >>>> >>> > >>>> >>> > >>>> >>> > On 6/24/16 9:19 AM, Thomas Yeo wrote: >>>> >>> >> >>>> >>> >> Hi Doug, >>>> >>> >> >>>> >>> >> Would your mri_segstats command work if instead of aseg.mgz, >>>> Sabin >>>> >>> >> passed in the cerbellum parcellation in the same anatomical >>>> space as >>>> >>> >> aseg? >>>> >>> >> >>>> >>> >> --Thomas >>>> >>> >> >>>> >>> >> On Thu, Jun 23, 2016 at 11:28 PM, Douglas Greve >>>> >>> >> <greve(a)nmr.mgh.harvard.edu >>>> <javascript:_e(%7B%7D,'cvml','greve(a)nmr.mgh.harvard.edu');>> wrote: >>>> >>> >>> >>>> >>> >>> After you run preproc-sess, there will be a file called >>>> >>> >>> register.dof6.dat. >>>> >>> >>> Map fmri into the anatomical space, something like >>>> >>> >>> >>>> >>> >>> mri_vol2vol --mov fmcpr.nii.gz --fstarg --reg register.dof6.dat >>>> --o >>>> >>> >>> fmcpr.anat.nii.gz >>>> >>> >>> >>>> >>> >>> Then use mri_segstats with --seg aseg.mgz --i fmcpr.anat.nii.gz >>>> >>> >>> >>>> >>> >>> However, I don't think that the aseg has those cerebellum >>>> >>> >>> parcellations. >>>> >>> >>> >>>> >>> >>> On 6/21/16 5:52 PM, Sabin Khadka wrote: >>>> >>> >>> >>>> >>> >>> Hi Yeo- Thanks very much for your answer. Yes the data is in >>>> mni305 >>>> >>> >>> space. I >>>> >>> >>> process my fmri data with >>>> >>> >>> >>>> >>> >>> preproc-sess -s rest210 -fsd bold -surface fsaverage lhrh >>>> -mni305 >>>> >>> >>> -fwhm 6 >>>> >>> >>> -per-run -stc odd >>>> >>> >>> and then to extract ROI time series values I did >>>> >>> >>> >>>> >>> >>> mri_segstats --annot fsaverage rh aparc --i >>>> >>> >>> rest210/bold/001/fmcpr.odd.sm6.fsaverage.rh.nii.gz --excludeid >>>> 2000 >>>> >>> >>> --excludeid 2004 --avgwf CorticalTimeSeries_rh.txt >>>> >>> >>> >>>> >>> >>> and for cortical time series >>>> >>> >>> >>>> >>> >>> mri_segstats --seg fsaverage/mri.2mm/aseg.mgz --ctab >>>> >>> >>> /opt/freesurfer/FreeSurferColorLUT.txt --id 10 --id 11 --id 12 >>>> --id >>>> >>> >>> 13 >>>> >>> >>> --id >>>> >>> >>> 17 --id 18 --id 26 --id 49 --id 50 --id 51 --id 52 --id 53 --id >>>> 54 >>>> >>> >>> --id >>>> >>> >>> 58 >>>> >>> >>> --i rest210/bold/001/fmcpr.odd.sm6.mni305.2mm.nii.gz --avgwf >>>> >>> >>> subCorticalTimeSeries.txt >>>> >>> >>> >>>> >>> >>> Now I am not sure as how to extract cerebellum ROIs (time >>>> series as >>>> >>> >>> described in Buckner et.al 2011)? If there are any other >>>> additional >>>> >>> >>> steps >>>> >>> >>> I >>>> >>> >>> need to perform ? or if I have to use some other scripts >>>> commands >>>> >>> >>> (other >>>> >>> >>> than mri_segstats). >>>> >>> >>> >>>> >>> >>> >>>> >>> >>> Cheers, >>>> >>> >>> Sabin Khadka >>>> >>> >>> >>>> >>> >>> On Mon, Jun 20, 2016 at 10:20 PM, Thomas Yeo < >>>> ythomas(a)csail.mit.edu >>>> <javascript:_e(%7B%7D,'cvml','ythomas(a)csail.mit.edu');>> >>>> >>> >>> wrote: >>>> >>> >>>> >>>> >>> >>>> Hi Sabin, >>>> >>> >>>> >>>> >>> >>>> The structures 601-628 FreeSurferCololLUT.txt correspond to >>>> >>> >>>> anatomical >>>> >>> >>>> substructures of the cerebellum (e.g., Crus I, etc). Is that >>>> what >>>> >>> >>>> you >>>> >>> >>>> want? Or are you looking to use the functional parcels defined >>>> in >>>> >>> >>>> Buckner 2011? >>>> >>> >>>> >>>> >>> >>>> In addition, I do not know how mri_segstats works, so I cannot >>>> >>> >>>> verify >>>> >>> >>>> how you call the command is correct. Maybe others can provide >>>> >>> >>>> feedback >>>> >>> >>>> here. >>>> >>> >>>> >>>> >>> >>>> However, the Buckner cerebellar parcellations in >>>> >>> >>>> $FREESURFER_HOME/average/Buckner_JNeurophysiol11_MNI152/ is in >>>> >>> >>>> MNI152 >>>> >>> >>>> space. From your command, I assume your data is in MNI305 >>>> space. So >>>> >>> >>>> you might need to transform the parcellation from MNI152 to >>>> MNI305. >>>> >>> >>>> >>>> >>> >>>> Thanks, >>>> >>> >>>> Thomas >>>> >>> >>>> >>>> >>> >>>> On Sat, Jun 18, 2016 at 8:49 AM, Sabin Khadka >>>> >>> >>>> <mr.sabinkhadka(a)gmail.com >>>> <javascript:_e(%7B%7D,'cvml','mr.sabinkhadka(a)gmail.com');>> >>>> >>> >>>> wrote: >>>> >>> >>>>> >>>> >>> >>>>> Hi all, >>>> >>> >>>>> >>>> >>> >>>>> I am trying to extract mean time series BOLD data using >>>> FSFAST from >>>> >>> >>>>> Cortical >>>> >>> >>>>> ROIs + sub cortical ROIs and cerebellum. >>>> >>> >>>>> >>>> >>> >>>>> preproc-sess -s rest210 -fsd bold -surface fsaverage lhrh >>>> -mni305 >>>> >>> >>>>> -fwhm >>>> >>> >>>>> 6 >>>> >>> >>>>> -per-run -stc odd mri_segstats --annot fsaverage lh aparc >>>> --i >>>> >>> >>>>> rest210/bold/001/fmcpr.odd.sm6.fsaverage.lh.nii.gz >>>> --excludeid 1000 >>>> >>> >>>>> --excludeid 1004 --avgwf CorticalTimeSeries_lh.txt >>>> >>> >>>>> mri_segstats --annot fsaverage rh aparc --i >>>> >>> >>>>> rest210/bold/001/fmcpr.odd.sm6.fsaverage.rh.nii.gz >>>> --excludeid 2000 >>>> >>> >>>>> --excludeid 2004 --avgwf CorticalTimeSeries_rh.txt >>>> >>> >>>>> >>>> >>> >>>>> and for cortical time series >>>> >>> >>>>> >>>> >>> >>>>> mri_segstats --seg fsaverage/mri.2mm/aseg.mgz --ctab >>>> >>> >>>>> /opt/freesurfer/FreeSurferColorLUT.txt --id 10 --id 11 --id >>>> 12 --id >>>> >>> >>>>> 13 >>>> >>> >>>>> --id >>>> >>> >>>>> 17 --id 18 --id 26 --id 49 --id 50 --id 51 --id 52 --id 53 >>>> --id 54 >>>> >>> >>>>> --id >>>> >>> >>>>> 58 >>>> >>> >>>>> --i rest210/bold/001/fmcpr.odd.sm6.mni305.2mm.nii.gz --avgwf >>>> >>> >>>>> subCorticalTimeSeries.txt >>>> >>> >>>>> >>>> >>> >>>>> But I am not sure on how exactly to extract time series from >>>> >>> >>>>> cerebellar >>>> >>> >>>>> regions. So if I want to extract time series from regions as >>>> >>> >>>>> described >>>> >>> >>>>> in >>>> >>> >>>>> Buckner et.al 2011. Could I just use mri_segstats for the >>>> labels >>>> >>> >>>>> 601-628 >>>> >>> >>>>> in >>>> >>> >>>>> FreeSurferCololLUT.txt? If not could you please direct me to >>>> >>> >>>>> processes >>>> >>> >>>>> that >>>> >>> >>>>> I can use. >>>> >>> >>>>> >>>> >>> >>>>> Cheers, >>>> >>> >>>>> Sabin Khadka >>>> >>> >>>>> >>>> >>> >>>>> _______________________________________________ >>>> >>> >>>>> Freesurfer mailing list >>>> >>> >>>>> Freesurfer(a)nmr.mgh.harvard.edu >>>> <javascript:_e(%7B%7D,'cvml','Freesurfer(a)nmr.mgh.harvard.edu');> >>>> >>> >>>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>>> >>> >>>>> >>>> >>> >>>>> >>>> >>> >>>>> The information in this e-mail is intended only for the >>>> person to >>>> >>> >>>>> whom >>>> >>> >>>>> it is >>>> >>> >>>>> addressed. If you believe this e-mail was sent to you in >>>> error and >>>> >>> >>>>> the >>>> >>> >>>>> e-mail >>>> >>> >>>>> contains patient information, please contact the Partners >>>> >>> >>>>> Compliance >>>> >>> >>>>> HelpLine at >>>> >>> >>>>> http://www.partners.org/complianceline . If the e-mail was >>>> sent to >>>> >>> >>>>> you >>>> >>> >>>>> in >>>> >>> >>>>> error >>>> >>> >>>>> but does not contain patient information, please contact the >>>> sender >>>> >>> >>>>> and >>>> >>> >>>>> properly >>>> >>> >>>>> dispose of the e-mail. >>>> >>> >>>>> >>>> >>> >>>> _______________________________________________ >>>> >>> >>>> Freesurfer mailing list >>>> >>> >>>> Freesurfer(a)nmr.mgh.harvard.edu >>>> <javascript:_e(%7B%7D,'cvml','Freesurfer(a)nmr.mgh.harvard.edu');> >>>> >>> >>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>>> >>> >>> >>>> >>> >>> >>>> >>> >>> >>>> >>> >>> >>>> >>> >>> _______________________________________________ >>>> >>> >>> Freesurfer mailing list >>>> >>> >>> Freesurfer(a)nmr.mgh.harvard.edu >>>> <javascript:_e(%7B%7D,'cvml','Freesurfer(a)nmr.mgh.harvard.edu');> >>>> >>> >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>>> >>> >>> >>>> >>> >>> >>>> >>> >>> >>>> >>> >>> _______________________________________________ >>>> >>> >>> Freesurfer mailing list >>>> >>> >>> Freesurfer(a)nmr.mgh.harvard.edu >>>> <javascript:_e(%7B%7D,'cvml','Freesurfer(a)nmr.mgh.harvard.edu');> >>>> >>> >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>>> >>> >>> >>>> >>> >>> >>>> >>> >>> The information in this e-mail is intended only for the person >>>> to >>>> >>> >>> whom it >>>> >>> >>> is >>>> >>> >>> addressed. If you believe this e-mail was sent to you in error >>>> and >>>> >>> >>> the >>>> >>> >>> e-mail >>>> >>> >>> contains patient information, please contact the Partners >>>> Compliance >>>> >>> >>> HelpLine at >>>> >>> >>> http://www.partners.org/complianceline . If the e-mail was >>>> sent to >>>> >>> >>> you in >>>> >>> >>> error >>>> >>> >>> but does not contain patient information, please contact the >>>> sender >>>> >>> >>> and >>>> >>> >>> properly >>>> >>> >>> dispose of the e-mail. >>>> >>> >>> >>>> >>> >> >>>> >>> > >>>> >>> _______________________________________________ >>>> >>> Freesurfer mailing list >>>> >>> Freesurfer(a)nmr.mgh.harvard.edu >>>> <javascript:_e(%7B%7D,'cvml','Freesurfer(a)nmr.mgh.harvard.edu');> >>>> >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>>> >> >>>> >> >>>> > >>>> >>> >>> >> >

2 1

Freeview recon button
by Walid Yassin 30 Jun '16

30 Jun '16

Hello freesurfers, I downloaded freesurfer v5.3.0. & I am using freeview, but it doesn't have the Recon edit button. I saw that someone asked about this questions twice in the archive but was never answered. There was a note in the wiki page that reads "*Note*: Recon edit mode is only available in the most recent release of freeview". I thought that the most recent release of freeview comes with the most recent release of freesurfer. Can someone please let me know if there is a separate download link to the recent release of freeview? Thank you in advance, Also If someone can answer my previous question regarding the Gyrification i would really really appreciate it. http://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg47883.html Thank you again, Best regards, Walid

2 2

Re: [Freesurfer] qdec load error missing BLT
by Antonin Skoch 30 Jun '16

30 Jun '16

Dear Joshua, we had the same problem with freeSurfer 5.3.0 on Debian GNU/Linux 8.3 (jessie). In our case this was warning, the qdec launched, however the fsgd plot functionality (interactive vertex-wise GLM plot display) did not work. It seems that the error is caused by interference of tk/blt libraries packaged with freeSurfer with those installed on the system. We were able to resolve this issue by uninstalling following installed packages: tk8.6-blt2.5 blt If this do not help to you, try to run strace -f qdec and inspect, which libraries are loaded during initialization on your system before the error is issued. Regards, Antonin Skoch

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REPOST: Skull Strip and Bad Surfaces
by Katherine Reiter 30 Jun '16

30 Jun '16

Dear FreeSurfer experts, I am working on a data set and am having particular difficulty with one subject. It appeared the skull strip was mistakenly removing occipital regions. These regions were absent from the brainmask, T1, and resulting surfaces. I attempted to solve this in 2 different ways. I first adjusted the watershed and reran the recon-all -autorecon2 in order to redraw the surfaces. Adjusting the watershed worked to include these regions in both the brainmask and T1 but the resulting surfaces hugely inaccurate (see the attached screenshot '4003_badsurfs_parietal_cerebellum2'; Oddly enough, the frontal surfaces are largely accurate but the parietal regions include gray matter in the white surface and even large amounts of the cerebellum, while excluding occipital regions. I then reran it from the raw dicoms and had the same issue with occipital regions being excluded so I adjusted the watershed and tried to manually fix the surfaces, but this resulted in similar inaccurate surfaces. See the second attached screenshot '4003_badsurfs'. ll surfaces are fairly messy, but some regions are more accurage, where the appears to distinguish between gray and white and other areas are over inclusive, but cerebellar and some superior and medial regions are excluded. Any and all help would be much appreciated. Thanks in advance! Kate Katherine Reiter, M.S. Clinical Psychology Doctoral Student Marquette University Phone: (414) 288-3807 Email: katherine.reiter(a)marquette.edu

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REPOST: Longitudinal Stream: Recon-all and template
by Tamara Tavares 30 Jun '16

30 Jun '16

Hello All, I am planning to run the longitudinal stream on my data set and I have a few questions: 1) When I run the data cross sectionally using "recon-all -all" should I specify all my subject's T1 volumes (using the -file1.nii -1file2.nii) or can I run each of my subject's T1 volumes individually through recon-all? My understanding is that some motion correction will occur if I specify more than one T1 which may alter the results versus if I specify one T1? 2) What input files should I use to create my base templates? Are the input files the norm.mgz files from each subject? Thank you in advance for your help! Best, Tamara

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