Freesurfer

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Re: [Freesurfer] Preproc
by Anastasia Yendiki 15 Aug '13

15 Aug '13

Hi Alan - This appears to be the same error message as the one for subject 118 that you sent yesterday. So I'd try here whatever you did to fix that one. a.y On Wed, 14 Aug 2013, Alan Francis wrote: > Hi Anastasia: > > Sorry to bother you again. Another of my brains gave an error message. I > have enclosed the trac-all log as an attachment. > > Thanks ever so much for your help, > > Alan > >

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fcseed-sess error
by O S 15 Aug '13

15 Aug '13

Dear Support, I am trying to use fcseed-sess to create a ventricle and CSF regressor for my resting state analysis. I have encountered an error running fcseed-sess. fcseed-config -vcsf -fsd Bold1 -mean -cfg vcsf_bold1_config -overwrite works, but then the following command fails: fcseed-sess -s AC30_1319 -cfg vcsf_bold1_config -overwrite The above command worked for half my subjects and had the below error for half with no discernible pattern. I've run it on jizo as well as my home machine with the same error. Cut-and-paste the following info into your FreeSurfer problem report: --------------------------------------------------------------------- FREESURFER_HOME: /usr/local/freesurfer/stable5_3_0 Build stamp: freesurfer-Linux-centos6_x86_64-stable-v5.3.0-20130514 RedHat release: CentOS release 6.4 (Final) Kernel info: Linux 2.6.32-358.2.1.el6.x86_64 x86_64 NMR Center info (/space/freesurfer exists): machine: jizo SUBJECTS_DIR: /autofs/cluster/lazar/projects/Omar/aging_conn/fc_fs PWD: /autofs/cluster/lazar/projects/Omar/aging_conn/fc_fs ssh jizo setenv SUBJECTS_DIR /autofs/cluster/lazar/projects/Omar/aging_conn/fc_fs cd /autofs/cluster/lazar/projects/Omar/aging_conn/fc_fs --------------------------------------------------------------------- I would appreciate any help. Let me know if anything is unclear. Thank! Best, Omar Error Message ************* [jizo:fc_fs] (nmr-stable53-env) fcseed-sess -s AC30_1319 -cfg vcsf_bold1_config -overwrite Logfile is /autofs/cluster/lazar/projects/Omar/aging_conn/fc_fs/log/fcseed-sess.vcsf_bold1_config.log.AC30_1319 Wed Aug 14 11:31:50 EDT 2013 Linux jizo 2.6.32-358.2.1.el6.x86_64 #1 SMP Wed Mar 13 00:26:49 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux setenv SUBJECTS_DIR /autofs/cluster/lazar/projects/Omar/aging_conn/fc_fs cd /autofs/cluster/lazar/projects/Omar/aging_conn/fc_fs /usr/local/freesurfer/stable5_3_0/fsfast/bin/fcseed-sess -s AC30_1319 -cfg vcsf_bold1_config -overwrite freesurfer-Linux-centos6_x86_64-stable-v5.3.0-20130514 Wed Aug 14 11:31:50 EDT 2013 Linux jizo 2.6.32-358.2.1.el6.x86_64 #1 SMP Wed Mar 13 00:26:49 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux setenv SUBJECTS_DIR /autofs/cluster/lazar/projects/Omar/aging_conn/fc_fs cd /autofs/cluster/lazar/projects/Omar/aging_conn/fc_fs /usr/local/freesurfer/stable5_3_0/fsfast/bin/fcseed-sess -s AC30_1319 -cfg vcsf_bold1_config -overwrite freesurfer-Linux-centos6_x86_64-stable-v5.3.0-20130514 mri_label2vol --seg /autofs/cluster/lazar/projects/Omar/aging_conn/fc_fs/AC30_1319/mri/aparc+aseg.mgz --reg /autofs/cluster/lazar/projects/Omar/aging_conn/fc_fs/AC30_1319/Bold1/001/register.dof6.dat --temp /autofs/cluster/lazar/projects/Omar/aging_conn/fc_fs/AC30_1319/Bold1/001/template.nii.gz --fillthresh .95 --o /autofs/cluster/lazar/projects/Omar/aging_conn/fc_fs/AC30_1319/Bold1/001/tmp.fcseed-sess.2081/seg.nii.gz --pvf /autofs/cluster/lazar/projects/Omar/aging_conn/fc_fs/AC30_1319/Bold1/001/tmp.fcseed-sess.2081/pvf.nii.gz PVF /autofs/cluster/lazar/projects/Omar/aging_conn/fc_fs/AC30_1319/Bold1/001/tmp.fcseed-sess.2081/pvf.nii.gz Number of labels: 0 Annot File: (null) Template Volume: /autofs/cluster/lazar/projects/Omar/aging_conn/fc_fs/AC30_1319/Bold1/001/template.nii.gz Outut Volume: /autofs/cluster/lazar/projects/Omar/aging_conn/fc_fs/AC30_1319/Bold1/001/tmp.fcseed-sess.2081/seg.nii.gz Registration File: /autofs/cluster/lazar/projects/Omar/aging_conn/fc_fs/AC30_1319/Bold1/001/register.dof6.dat Fill Threshold: 0.95 Label Vox Vol: 1 ProjType: (null) ProjTypeId: 0 ProjStart: 0 ProjStop: 0 ProjDelta: 0.1 Subject: (null) Hemi: (null) UseNewASeg2Vol: 1 DoLabelStatVol 0 LabelCodeOffset 0 setenv SUBJECTS_DIR /autofs/cluster/lazar/projects/Omar/aging_conn/fc_fs $Id: mri_label2vol.c,v 1.34.2.5 2012/06/08 17:31:03 greve Exp $ Template RAS-to-Vox: -------- -0.320 0.000 0.000 32.000; -0.000 -0.000 -0.320 32.000; -0.000 0.167 -0.000 12.500; 0.000 0.000 0.000 1.000; Template Voxel Volume: 58.5938 nHits Thresh: 55.6641 Loading registration from /autofs/cluster/lazar/projects/Omar/aging_conn/fc_fs/AC30_1319/Bold1/001/register.dof6.dat RegMat: -------- -0.106 0.977 -0.185 7.376; -0.994 -0.104 0.019 -0.687; -0.000 0.186 0.983 -23.526; 0.000 0.000 0.000 1.000; Label RAS-to-Vox: -------- 0.034 -0.313 0.059 29.640; 0.000 -0.059 -0.314 39.528; -0.166 -0.017 0.003 12.385; 0.000 0.000 0.000 1.000; ASeg2Vol: Building LUT ASeg2Vol: Sorting ASeg2Vol: Mapping ASeg2Vol: Reverse Map nmisses = 1120 (0 filled) ASeg2Vol: done PVF /autofs/cluster/lazar/projects/Omar/aging_conn/fc_fs/AC30_1319/Bold1/001/tmp.fcseed-sess.2081/pvf.nii.gz Computing PVF 58.5938 mri_binarize --i /autofs/cluster/lazar/projects/Omar/aging_conn/fc_fs/AC30_1319/Bold1/001/tmp.fcseed-sess.2081/seg.nii.gz --o /autofs/cluster/lazar/projects/Omar/aging_conn/fc_fs/AC30_1319/Bold1/001/tmp.fcseed-sess.2081/mask.nii.gz --match 4 --match 5 --match 43 --match 44 --match 31 --match 63 $Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $ cwd /autofs/cluster/lazar/projects/Omar/aging_conn/fc_fs cmdline mri_binarize --i /autofs/cluster/lazar/projects/Omar/aging_conn/fc_fs/AC30_1319/Bold1/001/tmp.fcseed-sess.2081/seg.nii.gz --o /autofs/cluster/lazar/projects/Omar/aging_conn/fc_fs/AC30_1319/Bold1/001/tmp.fcseed-sess.2081/mask.nii.gz --match 4 --match 5 --match 43 --match 44 --match 31 --match 63 sysname Linux hostname jizo machine x86_64 user osinglet input /autofs/cluster/lazar/projects/Omar/aging_conn/fc_fs/AC30_1319/Bold1/001/tmp.fcseed-sess.2081/seg.nii.gz frame 0 nErode3d 0 nErode2d 0 output /autofs/cluster/lazar/projects/Omar/aging_conn/fc_fs/AC30_1319/Bold1/001/tmp.fcseed-sess.2081/mask.nii.gz Binarizing based on matching values nMatch 6 0 4 1 5 2 43 3 44 4 31 5 63 binval 1 binvalnot 0 Found 0 values in range Counting number of voxels Found 0 voxels in final mask mri_binarize done mri_segstats --i /autofs/cluster/lazar/projects/Omar/aging_conn/fc_fs/AC30_1319/Bold1/001/fmcpr.nii.gz --seg /autofs/cluster/lazar/projects/Omar/aging_conn/fc_fs/AC30_1319/Bold1/001/tmp.fcseed-sess.2081/mask.nii.gz --id 1 --sum /autofs/cluster/lazar/projects/Omar/aging_conn/fc_fs/AC30_1319/Bold1/001/tmp.fcseed-sess.2081/junk.sum --avgwfvol /autofs/cluster/lazar/projects/Omar/aging_conn/fc_fs/AC30_1319/Bold1/001/tmp.fcseed-sess.2081/avgwf.mgh $Id: mri_segstats.c,v 1.75.2.9 2013/02/16 00:09:33 greve Exp $ cwd cmdline mri_segstats --i /autofs/cluster/lazar/projects/Omar/aging_conn/fc_fs/AC30_1319/Bold1/001/fmcpr.nii.gz --seg /autofs/cluster/lazar/projects/Omar/aging_conn/fc_fs/AC30_1319/Bold1/001/tmp.fcseed-sess.2081/mask.nii.gz --id 1 --sum /autofs/cluster/lazar/projects/Omar/aging_conn/fc_fs/AC30_1319/Bold1/001/tmp.fcseed-sess.2081/junk.sum --avgwfvol /autofs/cluster/lazar/projects/Omar/aging_conn/fc_fs/AC30_1319/Bold1/001/tmp.fcseed-sess.2081/avgwf.mgh sysname Linux hostname jizo machine x86_64 user osinglet UseRobust 0 Loading /autofs/cluster/lazar/projects/Omar/aging_conn/fc_fs/AC30_1319/Bold1/001/tmp.fcseed-sess.2081/mask.nii.gz Loading /autofs/cluster/lazar/projects/Omar/aging_conn/fc_fs/AC30_1319/Bold1/001/fmcpr.nii.gz Voxel Volume is 58.5938 mm^3 Generating list of segmentation ids Found 1 segmentations Computing statistics for each segmentation 0 1 0 0.000 MRIalloc(0, 1, 1): bad parm Reporting on 0 segmentations Computing spatial average of each frame Writing to /autofs/cluster/lazar/projects/Omar/aging_conn/fc_fs/AC30_1319/Bold1/001/tmp.fcseed-sess.2081/avgwf.mgh Segmentation fault (core dumped)

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Correction multiple comparisons for parcelated areas
by Anita van Loenhoud 15 Aug '13

15 Aug '13

Dear FreeSurfers, I’m comparing two groups (patients (N=45) and controls (N=93)) on cortical thickness using 34 parcelated areas in each hemisphere (i.e. 68 areas in total). When correcting for multiple comparisons using Bonferroni, only one area remains significant. Bonferroni is quite conservative (alpha needs to be lower than 0.05/68= 0.000735). Could you recommend any other, more lenient correction statistics for my data? In a search through the literature, I encountered adjusted Bonferroni or Benjamini-Hochberg as alternatives. Do you think these would be useful statistics, or have I missed other, more appropriate ones? Thanks a lot, Anna

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Finding a reference..
by jh kim 15 Aug '13

15 Aug '13

Dear experts Just a simple question. Is there a published study that showed a superiority of cortical thickness analysis (i.e., FreeSurfer) over VBM approach in assessing cortical grey matter changes in brain disorders? If so, please let me know. Thanks in advance for your help. Kim

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Fwd: FS version
by Cristian Paz 15 Aug '13

15 Aug '13

---------- Forwarded message ---------- From: Cristian Paz <pazcristian99(a)gmail.com> Date: 2013/8/14 Subject: Re: [Freesurfer] FS version To: Bruce Fischl <fischl(a)nmr.mgh.harvard.edu> Thank you for your reply! now - on the third try, I left it for three hours without checking and now it is actually running fiurther. great! what types of problem do I risk if if I use different versions? Will it be correct if it successfully runs or could there be errors? best, Cris 2013/8/14 Bruce Fischl <fischl(a)nmr.mgh.harvard.edu> > how long do you wait? In general it's a bad idea to mix version > > Bruce > > > > On Wed, 14 Aug 2013, Cristian Paz wrote: > > because every time I try to run >> >> recon-all -autorecon-pial -s 101 >> it seems to hang up here and nothing more happens : >> >> >> ______________________________**______________________ >> #@# Sphere lh Wed Aug 14 14:42:06 CEST 2013 >> /media/Secure_HDD/patients/**101/scripts >> >> mris_sphere -seed 1234 ../surf/lh.inflated ../surf/lh.sphere >> >> setting seed for random number genererator to 1234 >> $Id: mris_sphere.c,v 1.57 2011/03/02 00:04:34 nicks Exp $ >> $Id: mrisurf.c,v 1.693.2.2 2011/04/27 19:21:05 nicks Exp $ >> reading original vertex positions... >> unfolding cortex into spherical form... >> surface projected - minimizing metric distortion... >> ______________________________**________________________ >> >> Could this have to do with FreeSurfer version maybe? >> >> Cris >> >> >> 2013/8/14 Cristian Paz <pazcristian99(a)gmail.com> >> Dear experts! >> >> I have a question. >> >> I have run recon-all on a cluster , and I am editing on my local >> machine. I just checked the versions and I see that I have: >> >> freesurfer-x86_64-redhat-**linux-gnu-stable5-20110522 at the computing >> cluster and >> >> freesurfer-Linux-centos4_x86_**64-stable-pub-v5.1.0 on my local >> computer.... >> >> Is this a problem? >> >> Thank you very much for your help. >> >> Kind regards Cris >> >> >> >> >> > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/**complianceline<http://www.partners.org/complianceline>. If the e-mail was sent to you in error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. >

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Download freesurfer-Darwin-snowleopard-i686-stable-pub-v5.3.0.dmg
by ye tian 14 Aug '13

14 Aug '13

Dear Freesurfers, Has anyone recently downloaded freesurfer for Mac OS X 10.6? I tried downloading on two computers, and they gave errors of "no mountable file systems" and "not recognized" respectively. If someone has happened to download the same version, would you please let me know whether your download has worked? Thank you very much! Sincerely, Ye

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Re: [Freesurfer] trac-all download
by Anastasia Yendiki 14 Aug '13

14 Aug '13

If you already have the 5.1 version and have used it on some subjects, you can of course use the same version on the other subjects. But if you're going to download something new, that should be the 5.3 version, not an intermediate update to 5.1. It's highly recommended to use the 5.3 version of tracula b/c there are several improvements to it. On Wed, 14 Aug 2013, ana ;osp wrote: > thanksbut i'have all the data processed with 5.1 and i still have a few subjects to process so i didn't want to > download the 5.3 and mix versions... is there anyway to have it without download the 5.3? > thanks > > > > On Wed, Aug 14, 2013 at 11:11 AM, Anastasia Yendiki <ayendiki(a)nmr.mgh.harvard.edu> wrote: > > Hi Ana - If you notice the release notes, this was relevant to an old version of tracula. You should now > be using the latest version of tracula that's included in freesurfer 5.3, in which case you don't need any > extra downloads. > > a.y > > On Wed, 14 Aug 2013, ana ;osp wrote: > > hi'm trying to download the trac-all file from the site in the tracula release notes, it is the > download from > 2012/1/09 recommended for all, but hen i click it open a page and gives me an errorshould i do something > different > than just click? > thanks > > > > > > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the e-mail > contains patient information, please contact the Partners Compliance HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in error > but does not contain patient information, please contact the sender and properly > dispose of the e-mail. > > > >

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Re: [Freesurfer] Path analysis
by Anastasia Yendiki 14 Aug '13

14 Aug '13

This has to do with this error, which happened at an earlier step, during preprocessing (which is why checking all of the trac-all.log is important): /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data//bin/dmri_train: Command not found. You mentioned this problem last week, and there's an email from you on August 6th stating that the problem was fixed. How was the problem fixed? On Wed, 14 Aug 2013, Alan Francis wrote: > Hi Anastasia: > > Attached please find the trac-all log. > > thanks, > > Alan > > > On Wed, Aug 14, 2013 at 1:51 PM, Anastasia Yendiki <ayendiki(a)nmr.mgh.harvard.edu> wrote: > > Alan - As I asked before, please attach the entire file scripts/trac-all.log. Add it to your messaage as a > file attachment, don't paste any of it in the message. Is this clear? > > a.y > > > On Wed, 14 Aug 2013, Alan Francis wrote: > > Hi Anastasia: > > One of my brains had a problem when doing trac-all -path analysis. Please see below the complete > pathway. Thanks so > much for your help. > > Alan > > csh::alanf@cerebro > [/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons] : trac-all -path > -c /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/dmrirc-104 > INFO: SUBJECTS_DIR is > /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons > INFO: Diffusion root is > /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/ > Actual FREESURFER_HOME /autofs/cluster/freesurfer/centos6_x86_64/stable5_3_0 > trac-paths -c > /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/scripts/dmrirc.local > -log > /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/scripts/trac-all.log > -cmd > /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/scripts/trac-all.cmd > #------------------------------------- > /usr/local/freesurfer/stable5_3_0//bin/trac-paths > #------------------------------------- > #@# Path reconstruction Wed Aug 14 13:36:21 EDT 2013 > rm-rf/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/lh.cst_AS_avg33_mni > _bb > r > rm-rf/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/rh.cst_AS_avg33_mni > _bb > r > rm-rf/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/lh.unc_AS_avg33_mni > _bb > r > rm-rf/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/rh.unc_AS_avg33_mni > _bb > r > rm-rf/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/lh.ilf_AS_avg33_mni > _bb > r > rm-rf/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/rh.ilf_AS_avg33_mni > _bb > r > rm-rf/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/fmajor_PP_avg33_mni > _bb > r > rm-rf/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/fminor_PP_avg33_mni > _bb > r > rm-rf/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/lh.atr_PP_avg33_mni > _bb > r > rm-rf/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/rh.atr_PP_avg33_mni > _bb > r > rm-rf/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/lh.ccg_PP_avg33_mni > _bb > r > rm-rf/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/rh.ccg_PP_avg33_mni > _bb > r > rm-rf/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/lh.cab_PP_avg33_mni > _bb > r > rm-rf/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/rh.cab_PP_avg33_mni > _bb > r > rm-rf/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/lh.slfp_PP_avg33_mn > i_b > br > rm-rf/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/rh.slfp_PP_avg33_mn > i_b > br > rm-rf/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/lh.slft_PP_avg33_mn > i_b > br > rm-rf/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/rh.slft_PP_avg33_mn > i_b > br > /usr/local/freesurfer/stable5_3_0//bin/dmri_paths--outdir/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/lh.cst_AS_avg3 > 3_mni_bb > r/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/rh.cst_AS_avg33_mni_b > b > r/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/lh.unc_AS_avg33_mni_b > b > r/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/rh.unc_AS_avg33_mni_b > b > r/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/lh.ilf_AS_avg33_mni_b > b > r/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/rh.ilf_AS_avg33_mni_b > b > r/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/fmajor_PP_avg33_mni_b > b > r/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/fminor_PP_avg33_mni_b > b > r/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/lh.atr_PP_avg33_mni_b > b > r/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/rh.atr_PP_avg33_mni_b > b > r/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/lh.ccg_PP_avg33_mni_b > b > r/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/rh.ccg_PP_avg33_mni_b > b > r/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/lh.cab_PP_avg33_mni_b > b > r/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/rh.cab_PP_avg33_mni_b > b > r/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/lh.slfp_PP_avg33_mni_ > b > br/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/rh.slfp_PP_avg33_mni > _b > br/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/lh.slft_PP_avg33_mni > _b > br/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/rh.slft_PP_avg33_mni > _b > br --dwi > /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dmri/dwi.nii.gz > --grad /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dmri/bvecs > --bval > /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dmri/bvals--mask/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/diff/aparc+aseg > _mask. > bbr.nii.gz --bpdir > /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dmri.bedpostX > --ntr 2 --fmin > 0.05--roi1/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/lh.cst_AS_a > vg33_m > ni_bbr_end1_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel > /mni/rh.cst_AS_avg33_m > ni_bbr_end1_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel > /mni/lh.unc_AS_avg33_m > ni_bbr_end1_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel > /mni/rh.unc_AS_avg33_m > ni_bbr_end1_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel > /mni/lh.ilf_AS_avg33_m > ni_bbr_end1_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel > /mni/rh.ilf_AS_avg33_m > ni_bbr_end1_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel > /mni/fmajor_PP_avg33_m > ni_bbr_end1_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel > /mni/fminor_PP_avg33_m > ni_bbr_end1_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel > /mni/lh.atr_PP_avg33_m > ni_bbr_end1_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel > /mni/rh.atr_PP_avg33_m > ni_bbr_end1_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel > /mni/lh.ccg_PP_avg33_m > ni_bbr_end1_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel > /mni/rh.ccg_PP_avg33_m > ni_bbr_end1_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel > /mni/lh.cab_PP_avg33_m > ni_bbr_end1_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel > /mni/rh.cab_PP_avg33_m > ni_bbr_end1_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel > /mni/lh.slfp_PP_avg33_ > mni_bbr_end1_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabe > l/mni/rh.slfp_PP_avg33_ > mni_bbr_end1_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabe > l/mni/lh.slft_PP_avg33_ > mni_bbr_end1_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabe > l/mni/rh.slft_PP_avg33_ > mni_bbr_end1_dil.nii.gz--roi2/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/lh.cst_AS_a > vg33_m > ni_bbr_end2_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel > /mni/rh.cst_AS_avg33_m > ni_bbr_end2_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel > /mni/lh.unc_AS_avg33_m > ni_bbr_end2_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel > /mni/rh.unc_AS_avg33_m > ni_bbr_end2_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel > /mni/lh.ilf_AS_avg33_m > ni_bbr_end2_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel > /mni/rh.ilf_AS_avg33_m > ni_bbr_end2_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel > /mni/fmajor_PP_avg33_m > ni_bbr_end2_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel > /mni/fminor_PP_avg33_m > ni_bbr_end2_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel > /mni/lh.atr_PP_avg33_m > ni_bbr_end2_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel > /mni/rh.atr_PP_avg33_m > ni_bbr_end2_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel > /mni/lh.ccg_PP_avg33_m > ni_bbr_end2_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel > /mni/rh.ccg_PP_avg33_m > ni_bbr_end2_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel > /mni/lh.cab_PP_avg33_m > ni_bbr_end2_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel > /mni/rh.cab_PP_avg33_m > ni_bbr_end2_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel > /mni/lh.slfp_PP_avg33_ > mni_bbr_end2_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabe > l/mni/rh.slfp_PP_avg33_ > mni_bbr_end2_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabe > l/mni/lh.slft_PP_avg33_ > mni_bbr_end2_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabe > l/mni/rh.slft_PP_avg33_ > mni_bbr_end2_dil.nii.gz --reg > /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dmri/xfms/diff2mni.bbr.mat > --init/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/diff/lh.cst_AS_ > avg33_ > mni_bbr_cpts_6.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/dif > f/rh.cst_AS_avg33_ > mni_bbr_cpts_6.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/dif > f/lh.unc_AS_avg33_ > mni_bbr_cpts_5.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/dif > f/rh.unc_AS_avg33_ > mni_bbr_cpts_5.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/dif > f/lh.ilf_AS_avg33_ > mni_bbr_cpts_5.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/dif > f/rh.ilf_AS_avg33_ > mni_bbr_cpts_5.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/dif > f/fmajor_PP_avg33_ > mni_bbr_cpts_7.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/dif > f/fminor_PP_avg33_ > mni_bbr_cpts_5.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/dif > f/lh.atr_PP_avg33_ > mni_bbr_cpts_5.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/dif > f/rh.atr_PP_avg33_ > mni_bbr_cpts_5.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/dif > f/lh.ccg_PP_avg33_ > mni_bbr_cpts_5.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/dif > f/rh.ccg_PP_avg33_ > mni_bbr_cpts_5.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/dif > f/lh.cab_PP_avg33_ > mni_bbr_cpts_4.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/dif > f/rh.cab_PP_avg33_ > mni_bbr_cpts_4.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/dif > f/lh.slfp_PP_avg33 > _mni_bbr_cpts_5.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/di > ff/rh.slfp_PP_avg33 > _mni_bbr_cpts_5.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/di > ff/lh.slft_PP_avg33 > _mni_bbr_cpts_5.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/di > ff/rh.slft_PP_avg33 > _mni_bbr_cpts_5.txt--nprior/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/lh.cst_AS > _avg33_m > ni_bbr_fsnnprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/m > ni/lh.cst_AS_avg33_m > ni_bbr_fsnnids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni > /rh.cst_AS_avg33_m > ni_bbr_fsnnprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/m > ni/rh.cst_AS_avg33_m > ni_bbr_fsnnids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni > /lh.unc_AS_avg33_m > ni_bbr_fsnnprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/m > ni/lh.unc_AS_avg33_m > ni_bbr_fsnnids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni > /rh.unc_AS_avg33_m > ni_bbr_fsnnprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/m > ni/rh.unc_AS_avg33_m > ni_bbr_fsnnids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni > /lh.ilf_AS_avg33_m > ni_bbr_fsnnprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/m > ni/lh.ilf_AS_avg33_m > ni_bbr_fsnnids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni > /rh.ilf_AS_avg33_m > ni_bbr_fsnnprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/m > ni/rh.ilf_AS_avg33_m > ni_bbr_fsnnids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni > /fmajor_PP_avg33_m > ni_bbr_fsnnprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/m > ni/fmajor_PP_avg33_m > ni_bbr_fsnnids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni > /fminor_PP_avg33_m > ni_bbr_fsnnprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/m > ni/fminor_PP_avg33_m > ni_bbr_fsnnids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni > /lh.atr_PP_avg33_m > ni_bbr_fsnnprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/m > ni/lh.atr_PP_avg33_m > ni_bbr_fsnnids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni > /rh.atr_PP_avg33_m > ni_bbr_fsnnprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/m > ni/rh.atr_PP_avg33_m > ni_bbr_fsnnids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni > /lh.ccg_PP_avg33_m > ni_bbr_fsnnprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/m > ni/lh.ccg_PP_avg33_m > ni_bbr_fsnnids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni > /rh.ccg_PP_avg33_m > ni_bbr_fsnnprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/m > ni/rh.ccg_PP_avg33_m > ni_bbr_fsnnids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni > /lh.cab_PP_avg33_m > ni_bbr_fsnnprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/m > ni/lh.cab_PP_avg33_m > ni_bbr_fsnnids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni > /rh.cab_PP_avg33_m > ni_bbr_fsnnprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/m > ni/rh.cab_PP_avg33_m > ni_bbr_fsnnids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni > /lh.slfp_PP_avg33_ > mni_bbr_fsnnprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/ > mni/lh.slfp_PP_avg33_ > mni_bbr_fsnnids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mn > i/rh.slfp_PP_avg33_ > mni_bbr_fsnnprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/ > mni/rh.slfp_PP_avg33_ > mni_bbr_fsnnids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mn > i/lh.slft_PP_avg33_ > mni_bbr_fsnnprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/ > mni/lh.slft_PP_avg33_ > mni_bbr_fsnnids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mn > i/rh.slft_PP_avg33_ > mni_bbr_fsnnprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/ > mni/rh.slft_PP_avg33_ > mni_bbr_fsnnids_all--lprior/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/lh.cst_AS > _avg33_m > ni_bbr_fsprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni > /lh.cst_AS_avg33_m > ni_bbr_fsids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/r > h.cst_AS_avg33_m > ni_bbr_fsprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni > /rh.cst_AS_avg33_m > ni_bbr_fsids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/l > h.unc_AS_avg33_m > ni_bbr_fsprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni > /lh.unc_AS_avg33_m > ni_bbr_fsids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/r > h.unc_AS_avg33_m > ni_bbr_fsprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni > /rh.unc_AS_avg33_m > ni_bbr_fsids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/l > h.ilf_AS_avg33_m > ni_bbr_fsprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni > /lh.ilf_AS_avg33_m > ni_bbr_fsids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/r > h.ilf_AS_avg33_m > ni_bbr_fsprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni > /rh.ilf_AS_avg33_m > ni_bbr_fsids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/f > major_PP_avg33_m > ni_bbr_fsprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni > /fmajor_PP_avg33_m > ni_bbr_fsids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/f > minor_PP_avg33_m > ni_bbr_fsprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni > /fminor_PP_avg33_m > ni_bbr_fsids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/l > h.atr_PP_avg33_m > ni_bbr_fsprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni > /lh.atr_PP_avg33_m > ni_bbr_fsids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/r > h.atr_PP_avg33_m > ni_bbr_fsprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni > /rh.atr_PP_avg33_m > ni_bbr_fsids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/l > h.ccg_PP_avg33_m > ni_bbr_fsprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni > /lh.ccg_PP_avg33_m > ni_bbr_fsids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/r > h.ccg_PP_avg33_m > ni_bbr_fsprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni > /rh.ccg_PP_avg33_m > ni_bbr_fsids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/l > h.cab_PP_avg33_m > ni_bbr_fsprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni > /lh.cab_PP_avg33_m > ni_bbr_fsids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/r > h.cab_PP_avg33_m > ni_bbr_fsprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni > /rh.cab_PP_avg33_m > ni_bbr_fsids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/l > h.slfp_PP_avg33_ > mni_bbr_fsprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mn > i/lh.slfp_PP_avg33_ > mni_bbr_fsids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/ > rh.slfp_PP_avg33_ > mni_bbr_fsprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mn > i/rh.slfp_PP_avg33_ > mni_bbr_fsids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/ > lh.slft_PP_avg33_ > mni_bbr_fsprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mn > i/lh.slft_PP_avg33_ > mni_bbr_fsids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/ > rh.slft_PP_avg33_ > mni_bbr_fsprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mn > i/rh.slft_PP_avg33_ > mni_bbr_fsids_all--seg/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/aparc+aseg.n > ii.gz > --nb 200 --ns 7500 --nu 0 --nk 5--sdp/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/diff/lh.cst_AS_a > vg33_ > mni_bbr_cpts_6_std.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel > /diff/rh.cst_AS_avg33_ > mni_bbr_cpts_6_std.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel > /diff/lh.unc_AS_avg33_ > mni_bbr_cpts_5_std.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel > /diff/rh.unc_AS_avg33_ > mni_bbr_cpts_5_std.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel > /diff/lh.ilf_AS_avg33_ > mni_bbr_cpts_5_std.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel > /diff/rh.ilf_AS_avg33_ > mni_bbr_cpts_5_std.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel > /diff/fmajor_PP_avg33_ > mni_bbr_cpts_7_std.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel > /diff/fminor_PP_avg33_ > mni_bbr_cpts_5_std.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel > /diff/lh.atr_PP_avg33_ > mni_bbr_cpts_5_std.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel > /diff/rh.atr_PP_avg33_ > mni_bbr_cpts_5_std.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel > /diff/lh.ccg_PP_avg33_ > mni_bbr_cpts_5_std.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel > /diff/rh.ccg_PP_avg33_ > mni_bbr_cpts_5_std.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel > /diff/lh.cab_PP_avg33_ > mni_bbr_cpts_4_std.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel > /diff/rh.cab_PP_avg33_ > mni_bbr_cpts_4_std.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel > /diff/lh.slfp_PP_avg33 > _mni_bbr_cpts_5_std.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabe > l/diff/rh.slfp_PP_avg33 > _mni_bbr_cpts_5_std.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabe > l/diff/lh.slft_PP_avg33 > _mni_bbr_cpts_5_std.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabe > l/diff/rh.slft_PP_avg33 > _mni_bbr_cpts_5_std.txt > > > cwd /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons > cmdline /usr/local/freesurfer/stable5_3_0//bin/dmri_paths--outdir/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/lh.cst_AS_avg3 > 3_mni_bb > r/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/rh.cst_AS_avg33_mni_b > b > r/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/lh.unc_AS_avg33_mni_b > b > r/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/rh.unc_AS_avg33_mni_b > b > r/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/lh.ilf_AS_avg33_mni_b > b > r/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/rh.ilf_AS_avg33_mni_b > b > r/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/fmajor_PP_avg33_mni_b > b > r/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/fminor_PP_avg33_mni_b > b > r/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/lh.atr_PP_avg33_mni_b > b > r/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/rh.atr_PP_avg33_mni_b > b > r/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/lh.ccg_PP_avg33_mni_b > b > r/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/rh.ccg_PP_avg33_mni_b > b > r/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/lh.cab_PP_avg33_mni_b > b > r/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/rh.cab_PP_avg33_mni_b > b > r/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/lh.slfp_PP_avg33_mni_ > b > br/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/rh.slfp_PP_avg33_mni > _b > br/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/lh.slft_PP_avg33_mni > _b > br/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/rh.slft_PP_avg33_mni > _b > br --dwi > /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dmri/dwi.nii.gz > --grad /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dmri/bvecs > --bval > /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dmri/bvals--mask/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/diff/aparc+aseg > _mask. > bbr.nii.gz --bpdir > /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dmri.bedpostX > --ntr 2 --fmin > 0.05--roi1/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/lh.cst_AS_a > vg33_m > ni_bbr_end1_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel > /mni/rh.cst_AS_avg33_m > ni_bbr_end1_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel > /mni/lh.unc_AS_avg33_m > ni_bbr_end1_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel > /mni/rh.unc_AS_avg33_m > ni_bbr_end1_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel > /mni/lh.ilf_AS_avg33_m > ni_bbr_end1_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel > /mni/rh.ilf_AS_avg33_m > ni_bbr_end1_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel > /mni/fmajor_PP_avg33_m > ni_bbr_end1_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel > /mni/fminor_PP_avg33_m > ni_bbr_end1_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel > /mni/lh.atr_PP_avg33_m > ni_bbr_end1_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel > /mni/rh.atr_PP_avg33_m > ni_bbr_end1_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel > /mni/lh.ccg_PP_avg33_m > ni_bbr_end1_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel > /mni/rh.ccg_PP_avg33_m > ni_bbr_end1_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel > /mni/lh.cab_PP_avg33_m > ni_bbr_end1_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel > /mni/rh.cab_PP_avg33_m > ni_bbr_end1_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel > /mni/lh.slfp_PP_avg33_ > mni_bbr_end1_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabe > l/mni/rh.slfp_PP_avg33_ > mni_bbr_end1_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabe > l/mni/lh.slft_PP_avg33_ > mni_bbr_end1_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabe > l/mni/rh.slft_PP_avg33_ > mni_bbr_end1_dil.nii.gz--roi2/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/lh.cst_AS_a > vg33_m > ni_bbr_end2_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel > /mni/rh.cst_AS_avg33_m > ni_bbr_end2_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel > /mni/lh.unc_AS_avg33_m > ni_bbr_end2_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel > /mni/rh.unc_AS_avg33_m > ni_bbr_end2_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel > /mni/lh.ilf_AS_avg33_m > ni_bbr_end2_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel > /mni/rh.ilf_AS_avg33_m > ni_bbr_end2_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel > /mni/fmajor_PP_avg33_m > ni_bbr_end2_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel > /mni/fminor_PP_avg33_m > ni_bbr_end2_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel > /mni/lh.atr_PP_avg33_m > ni_bbr_end2_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel > /mni/rh.atr_PP_avg33_m > ni_bbr_end2_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel > /mni/lh.ccg_PP_avg33_m > ni_bbr_end2_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel > /mni/rh.ccg_PP_avg33_m > ni_bbr_end2_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel > /mni/lh.cab_PP_avg33_m > ni_bbr_end2_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel > /mni/rh.cab_PP_avg33_m > ni_bbr_end2_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel > /mni/lh.slfp_PP_avg33_ > mni_bbr_end2_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabe > l/mni/rh.slfp_PP_avg33_ > mni_bbr_end2_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabe > l/mni/lh.slft_PP_avg33_ > mni_bbr_end2_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabe > l/mni/rh.slft_PP_avg33_ > mni_bbr_end2_dil.nii.gz --reg > /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dmri/xfms/diff2mni.bbr.mat > --init/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/diff/lh.cst_AS_ > avg33_ > mni_bbr_cpts_6.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/dif > f/rh.cst_AS_avg33_ > mni_bbr_cpts_6.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/dif > f/lh.unc_AS_avg33_ > mni_bbr_cpts_5.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/dif > f/rh.unc_AS_avg33_ > mni_bbr_cpts_5.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/dif > f/lh.ilf_AS_avg33_ > mni_bbr_cpts_5.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/dif > f/rh.ilf_AS_avg33_ > mni_bbr_cpts_5.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/dif > f/fmajor_PP_avg33_ > mni_bbr_cpts_7.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/dif > f/fminor_PP_avg33_ > mni_bbr_cpts_5.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/dif > f/lh.atr_PP_avg33_ > mni_bbr_cpts_5.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/dif > f/rh.atr_PP_avg33_ > mni_bbr_cpts_5.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/dif > f/lh.ccg_PP_avg33_ > mni_bbr_cpts_5.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/dif > f/rh.ccg_PP_avg33_ > mni_bbr_cpts_5.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/dif > f/lh.cab_PP_avg33_ > mni_bbr_cpts_4.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/dif > f/rh.cab_PP_avg33_ > mni_bbr_cpts_4.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/dif > f/lh.slfp_PP_avg33 > _mni_bbr_cpts_5.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/di > ff/rh.slfp_PP_avg33 > _mni_bbr_cpts_5.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/di > ff/lh.slft_PP_avg33 > _mni_bbr_cpts_5.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/di > ff/rh.slft_PP_avg33 > _mni_bbr_cpts_5.txt--nprior/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/lh.cst_AS > _avg33_m > ni_bbr_fsnnprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/m > ni/lh.cst_AS_avg33_m > ni_bbr_fsnnids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni > /rh.cst_AS_avg33_m > ni_bbr_fsnnprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/m > ni/rh.cst_AS_avg33_m > ni_bbr_fsnnids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni > /lh.unc_AS_avg33_m > ni_bbr_fsnnprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/m > ni/lh.unc_AS_avg33_m > ni_bbr_fsnnids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni > /rh.unc_AS_avg33_m > ni_bbr_fsnnprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/m > ni/rh.unc_AS_avg33_m > ni_bbr_fsnnids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni > /lh.ilf_AS_avg33_m > ni_bbr_fsnnprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/m > ni/lh.ilf_AS_avg33_m > ni_bbr_fsnnids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni > /rh.ilf_AS_avg33_m > ni_bbr_fsnnprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/m > ni/rh.ilf_AS_avg33_m > ni_bbr_fsnnids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni > /fmajor_PP_avg33_m > ni_bbr_fsnnprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/m > ni/fmajor_PP_avg33_m > ni_bbr_fsnnids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni > /fminor_PP_avg33_m > ni_bbr_fsnnprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/m > ni/fminor_PP_avg33_m > ni_bbr_fsnnids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni > /lh.atr_PP_avg33_m > ni_bbr_fsnnprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/m > ni/lh.atr_PP_avg33_m > ni_bbr_fsnnids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni > /rh.atr_PP_avg33_m > ni_bbr_fsnnprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/m > ni/rh.atr_PP_avg33_m > ni_bbr_fsnnids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni > /lh.ccg_PP_avg33_m > ni_bbr_fsnnprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/m > ni/lh.ccg_PP_avg33_m > ni_bbr_fsnnids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni > /rh.ccg_PP_avg33_m > ni_bbr_fsnnprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/m > ni/rh.ccg_PP_avg33_m > ni_bbr_fsnnids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni > /lh.cab_PP_avg33_m > ni_bbr_fsnnprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/m > ni/lh.cab_PP_avg33_m > ni_bbr_fsnnids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni > /rh.cab_PP_avg33_m > ni_bbr_fsnnprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/m > ni/rh.cab_PP_avg33_m > ni_bbr_fsnnids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni > /lh.slfp_PP_avg33_ > mni_bbr_fsnnprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/ > mni/lh.slfp_PP_avg33_ > mni_bbr_fsnnids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mn > i/rh.slfp_PP_avg33_ > mni_bbr_fsnnprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/ > mni/rh.slfp_PP_avg33_ > mni_bbr_fsnnids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mn > i/lh.slft_PP_avg33_ > mni_bbr_fsnnprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/ > mni/lh.slft_PP_avg33_ > mni_bbr_fsnnids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mn > i/rh.slft_PP_avg33_ > mni_bbr_fsnnprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/ > mni/rh.slft_PP_avg33_ > mni_bbr_fsnnids_all--lprior/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/lh.cst_AS > _avg33_m > ni_bbr_fsprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni > /lh.cst_AS_avg33_m > ni_bbr_fsids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/r > h.cst_AS_avg33_m > ni_bbr_fsprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni > /rh.cst_AS_avg33_m > ni_bbr_fsids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/l > h.unc_AS_avg33_m > ni_bbr_fsprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni > /lh.unc_AS_avg33_m > ni_bbr_fsids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/r > h.unc_AS_avg33_m > ni_bbr_fsprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni > /rh.unc_AS_avg33_m > ni_bbr_fsids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/l > h.ilf_AS_avg33_m > ni_bbr_fsprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni > /lh.ilf_AS_avg33_m > ni_bbr_fsids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/r > h.ilf_AS_avg33_m > ni_bbr_fsprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni > /rh.ilf_AS_avg33_m > ni_bbr_fsids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/f > major_PP_avg33_m > ni_bbr_fsprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni > /fmajor_PP_avg33_m > ni_bbr_fsids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/f > minor_PP_avg33_m > ni_bbr_fsprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni > /fminor_PP_avg33_m > ni_bbr_fsids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/l > h.atr_PP_avg33_m > ni_bbr_fsprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni > /lh.atr_PP_avg33_m > ni_bbr_fsids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/r > h.atr_PP_avg33_m > ni_bbr_fsprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni > /rh.atr_PP_avg33_m > ni_bbr_fsids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/l > h.ccg_PP_avg33_m > ni_bbr_fsprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni > /lh.ccg_PP_avg33_m > ni_bbr_fsids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/r > h.ccg_PP_avg33_m > ni_bbr_fsprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni > /rh.ccg_PP_avg33_m > ni_bbr_fsids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/l > h.cab_PP_avg33_m > ni_bbr_fsprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni > /lh.cab_PP_avg33_m > ni_bbr_fsids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/r > h.cab_PP_avg33_m > ni_bbr_fsprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni > /rh.cab_PP_avg33_m > ni_bbr_fsids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/l > h.slfp_PP_avg33_ > mni_bbr_fsprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mn > i/lh.slfp_PP_avg33_ > mni_bbr_fsids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/ > rh.slfp_PP_avg33_ > mni_bbr_fsprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mn > i/rh.slfp_PP_avg33_ > mni_bbr_fsids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/ > lh.slft_PP_avg33_ > mni_bbr_fsprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mn > i/lh.slft_PP_avg33_ > mni_bbr_fsids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/ > rh.slft_PP_avg33_ > mni_bbr_fsprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mn > i/rh.slft_PP_avg33_ > mni_bbr_fsids_all--seg/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/mni/aparc+aseg.n > ii.gz > --nb 200 --ns 7500 --nu 0 --nk 5--sdp/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/diff/lh.cst_AS_a > vg33_ > mni_bbr_cpts_6_std.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel > /diff/rh.cst_AS_avg33_ > mni_bbr_cpts_6_std.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel > /diff/lh.unc_AS_avg33_ > mni_bbr_cpts_5_std.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel > /diff/rh.unc_AS_avg33_ > mni_bbr_cpts_5_std.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel > /diff/lh.ilf_AS_avg33_ > mni_bbr_cpts_5_std.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel > /diff/rh.ilf_AS_avg33_ > mni_bbr_cpts_5_std.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel > /diff/fmajor_PP_avg33_ > mni_bbr_cpts_7_std.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel > /diff/fminor_PP_avg33_ > mni_bbr_cpts_5_std.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel > /diff/lh.atr_PP_avg33_ > mni_bbr_cpts_5_std.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel > /diff/rh.atr_PP_avg33_ > mni_bbr_cpts_5_std.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel > /diff/lh.ccg_PP_avg33_ > mni_bbr_cpts_5_std.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel > /diff/rh.ccg_PP_avg33_ > mni_bbr_cpts_5_std.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel > /diff/lh.cab_PP_avg33_ > mni_bbr_cpts_4_std.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel > /diff/rh.cab_PP_avg33_ > mni_bbr_cpts_4_std.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel > /diff/lh.slfp_PP_avg33 > _mni_bbr_cpts_5_std.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabe > l/diff/rh.slfp_PP_avg33 > _mni_bbr_cpts_5_std.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabe > l/diff/lh.slft_PP_avg33 > _mni_bbr_cpts_5_std.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabe > l/diff/rh.slft_PP_avg33 > _mni_bbr_cpts_5_std.txt > sysname Linux > hostname cerebro > machine x86_64 > user alanf > Outputdirectory:/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/lh.cst_AS_av > g33_mni_bb > r/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/rh.cst_AS_avg33_mni_b > b > r/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/lh.unc_AS_avg33_mni_b > b > r/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/rh.unc_AS_avg33_mni_b > b > r/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/lh.ilf_AS_avg33_mni_b > b > r/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/rh.ilf_AS_avg33_mni_b > b > r/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/fmajor_PP_avg33_mni_b > b > r/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/fminor_PP_avg33_mni_b > b > r/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/lh.atr_PP_avg33_mni_b > b > r/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/rh.atr_PP_avg33_mni_b > b > r/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/lh.ccg_PP_avg33_mni_b > b > r/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/rh.ccg_PP_avg33_mni_b > b > r/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/lh.cab_PP_avg33_mni_b > b > r/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/rh.cab_PP_avg33_mni_b > b > r/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/lh.slfp_PP_avg33_mni_ > b > br/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/rh.slfp_PP_avg33_mni > _b > br/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/lh.slft_PP_avg33_mni > _b > br/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dpath/rh.slft_PP_avg33_mni > _b > br > DWIs: > /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dmri/dwi.nii.gz > Gradients: > /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dmri/bvecs > B-values: > /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dmri/bvals > Mask:/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/diff/aparc+aseg_ > mask. > bbr.nii.gz > BEDPOST directory: > /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dmri.bedpostX > Max number of tracts per voxel: 2 > Tract volume fraction threshold: 0.05 > Initial control pointfile:/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/diff/lh.cst_AS_av > g33_m > ni_bbr_cpts_6.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/diff/ > rh.cst_AS_avg33_m > ni_bbr_cpts_6.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/diff/ > lh.unc_AS_avg33_m > ni_bbr_cpts_5.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/diff/ > rh.unc_AS_avg33_m > ni_bbr_cpts_5.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/diff/ > lh.ilf_AS_avg33_m > ni_bbr_cpts_5.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/diff/ > rh.ilf_AS_avg33_m > ni_bbr_cpts_5.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/diff/ > fmajor_PP_avg33_m > ni_bbr_cpts_7.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/diff/ > fminor_PP_avg33_m > ni_bbr_cpts_5.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/diff/ > lh.atr_PP_avg33_m > ni_bbr_cpts_5.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/diff/ > rh.atr_PP_avg33_m > ni_bbr_cpts_5.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/diff/ > lh.ccg_PP_avg33_m > ni_bbr_cpts_5.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/diff/ > rh.ccg_PP_avg33_m > ni_bbr_cpts_5.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/diff/ > lh.cab_PP_avg33_m > ni_bbr_cpts_4.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/diff/ > rh.cab_PP_avg33_m > ni_bbr_cpts_4.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/diff/ > lh.slfp_PP_avg33_ > mni_bbr_cpts_5.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/diff > /rh.slfp_PP_avg33_ > mni_bbr_cpts_5.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/diff > /lh.slft_PP_avg33_ > mni_bbr_cpts_5.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/diff > /rh.slft_PP_avg33_ > mni_bbr_cpts_5.txt > End ROI1:/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/lh.cst_AS_avg33_ > mn > i_bbr_end1_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/m > ni/rh.cst_AS_avg33_mn > i_bbr_end1_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/m > ni/lh.unc_AS_avg33_mn > i_bbr_end1_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/m > ni/rh.unc_AS_avg33_mn > i_bbr_end1_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/m > ni/lh.ilf_AS_avg33_mn > i_bbr_end1_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/m > ni/rh.ilf_AS_avg33_mn > i_bbr_end1_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/m > ni/fmajor_PP_avg33_mn > i_bbr_end1_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/m > ni/fminor_PP_avg33_mn > i_bbr_end1_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/m > ni/lh.atr_PP_avg33_mn > i_bbr_end1_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/m > ni/rh.atr_PP_avg33_mn > i_bbr_end1_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/m > ni/lh.ccg_PP_avg33_mn > i_bbr_end1_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/m > ni/rh.ccg_PP_avg33_mn > i_bbr_end1_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/m > ni/lh.cab_PP_avg33_mn > i_bbr_end1_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/m > ni/rh.cab_PP_avg33_mn > i_bbr_end1_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/m > ni/lh.slfp_PP_avg33_m > ni_bbr_end1_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/ > mni/rh.slfp_PP_avg33_m > ni_bbr_end1_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/ > mni/lh.slft_PP_avg33_m > ni_bbr_end1_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/ > mni/rh.slft_PP_avg33_m > ni_bbr_end1_dil.nii.gz > End ROI2:/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/lh.cst_AS_avg33_ > mn > i_bbr_end2_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/m > ni/rh.cst_AS_avg33_mn > i_bbr_end2_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/m > ni/lh.unc_AS_avg33_mn > i_bbr_end2_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/m > ni/rh.unc_AS_avg33_mn > i_bbr_end2_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/m > ni/lh.ilf_AS_avg33_mn > i_bbr_end2_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/m > ni/rh.ilf_AS_avg33_mn > i_bbr_end2_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/m > ni/fmajor_PP_avg33_mn > i_bbr_end2_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/m > ni/fminor_PP_avg33_mn > i_bbr_end2_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/m > ni/lh.atr_PP_avg33_mn > i_bbr_end2_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/m > ni/rh.atr_PP_avg33_mn > i_bbr_end2_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/m > ni/lh.ccg_PP_avg33_mn > i_bbr_end2_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/m > ni/rh.ccg_PP_avg33_mn > i_bbr_end2_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/m > ni/lh.cab_PP_avg33_mn > i_bbr_end2_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/m > ni/rh.cab_PP_avg33_mn > i_bbr_end2_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/m > ni/lh.slfp_PP_avg33_m > ni_bbr_end2_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/ > mni/rh.slfp_PP_avg33_m > ni_bbr_end2_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/ > mni/lh.slft_PP_avg33_m > ni_bbr_end2_dil.nii.gz/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/ > mni/rh.slft_PP_avg33_m > ni_bbr_end2_dil.nii.gz > Neighbor asegprior:/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/lh.cst_AS_av > g33_mn > i_bbr_fsnnprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni > /rh.cst_AS_avg33_mn > i_bbr_fsnnprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni > /lh.unc_AS_avg33_mn > i_bbr_fsnnprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni > /rh.unc_AS_avg33_mn > i_bbr_fsnnprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni > /lh.ilf_AS_avg33_mn > i_bbr_fsnnprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni > /rh.ilf_AS_avg33_mn > i_bbr_fsnnprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni > /fmajor_PP_avg33_mn > i_bbr_fsnnprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni > /fminor_PP_avg33_mn > i_bbr_fsnnprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni > /lh.atr_PP_avg33_mn > i_bbr_fsnnprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni > /rh.atr_PP_avg33_mn > i_bbr_fsnnprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni > /lh.ccg_PP_avg33_mn > i_bbr_fsnnprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni > /rh.ccg_PP_avg33_mn > i_bbr_fsnnprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni > /lh.cab_PP_avg33_mn > i_bbr_fsnnprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni > /rh.cab_PP_avg33_mn > i_bbr_fsnnprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni > /lh.slfp_PP_avg33_m > ni_bbr_fsnnprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mn > i/rh.slfp_PP_avg33_m > ni_bbr_fsnnprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mn > i/lh.slft_PP_avg33_m > ni_bbr_fsnnprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mn > i/rh.slft_PP_avg33_m > ni_bbr_fsnnprior_all > Neighbor aseg label IDlist:/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/lh.cst_AS_avg > 33_mn > i_bbr_fsnnids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/r > h.cst_AS_avg33_mn > i_bbr_fsnnids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/l > h.unc_AS_avg33_mn > i_bbr_fsnnids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/r > h.unc_AS_avg33_mn > i_bbr_fsnnids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/l > h.ilf_AS_avg33_mn > i_bbr_fsnnids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/r > h.ilf_AS_avg33_mn > i_bbr_fsnnids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/f > major_PP_avg33_mn > i_bbr_fsnnids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/f > minor_PP_avg33_mn > i_bbr_fsnnids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/l > h.atr_PP_avg33_mn > i_bbr_fsnnids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/r > h.atr_PP_avg33_mn > i_bbr_fsnnids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/l > h.ccg_PP_avg33_mn > i_bbr_fsnnids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/r > h.ccg_PP_avg33_mn > i_bbr_fsnnids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/l > h.cab_PP_avg33_mn > i_bbr_fsnnids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/r > h.cab_PP_avg33_mn > i_bbr_fsnnids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/l > h.slfp_PP_avg33_m > ni_bbr_fsnnids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/ > rh.slfp_PP_avg33_m > ni_bbr_fsnnids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/ > lh.slft_PP_avg33_m > ni_bbr_fsnnids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/ > rh.slft_PP_avg33_m > ni_bbr_fsnnids_all > Neighbor aseg prior set: 14 > Local asegprior:/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/lh.cst_AS_av > g33_mn > i_bbr_fsprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/r > h.cst_AS_avg33_mn > i_bbr_fsprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/l > h.unc_AS_avg33_mn > i_bbr_fsprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/r > h.unc_AS_avg33_mn > i_bbr_fsprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/l > h.ilf_AS_avg33_mn > i_bbr_fsprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/r > h.ilf_AS_avg33_mn > i_bbr_fsprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/f > major_PP_avg33_mn > i_bbr_fsprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/f > minor_PP_avg33_mn > i_bbr_fsprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/l > h.atr_PP_avg33_mn > i_bbr_fsprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/r > h.atr_PP_avg33_mn > i_bbr_fsprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/l > h.ccg_PP_avg33_mn > i_bbr_fsprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/r > h.ccg_PP_avg33_mn > i_bbr_fsprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/l > h.cab_PP_avg33_mn > i_bbr_fsprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/r > h.cab_PP_avg33_mn > i_bbr_fsprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/l > h.slfp_PP_avg33_m > ni_bbr_fsprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/ > rh.slfp_PP_avg33_m > ni_bbr_fsprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/ > lh.slft_PP_avg33_m > ni_bbr_fsprior_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/ > rh.slft_PP_avg33_m > ni_bbr_fsprior_all > Local aseg label IDlist:/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/lh.cst_AS_avg > 33_mn > i_bbr_fsids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/rh. > cst_AS_avg33_mn > i_bbr_fsids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/lh. > unc_AS_avg33_mn > i_bbr_fsids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/rh. > unc_AS_avg33_mn > i_bbr_fsids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/lh. > ilf_AS_avg33_mn > i_bbr_fsids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/rh. > ilf_AS_avg33_mn > i_bbr_fsids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/fma > jor_PP_avg33_mn > i_bbr_fsids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/fmi > nor_PP_avg33_mn > i_bbr_fsids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/lh. > atr_PP_avg33_mn > i_bbr_fsids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/rh. > atr_PP_avg33_mn > i_bbr_fsids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/lh. > ccg_PP_avg33_mn > i_bbr_fsids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/rh. > ccg_PP_avg33_mn > i_bbr_fsids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/lh. > cab_PP_avg33_mn > i_bbr_fsids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/rh. > cab_PP_avg33_mn > i_bbr_fsids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/lh. > slfp_PP_avg33_m > ni_bbr_fsids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/rh > .slfp_PP_avg33_m > ni_bbr_fsids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/lh > .slft_PP_avg33_m > ni_bbr_fsids_all/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/rh > .slft_PP_avg33_m > ni_bbr_fsids_all > Local aseg prior set: 15 > Segmentation map: > /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/aparc+aseg.nii.gz > DWI-to-atlas affine registration: > /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dmri/xfms/diff2mni.bbr.mat > Number of burn-in samples: 200 > Number of post-burn-in samples: 7500 > Keep every: 5-th sample > Update proposal every: 0-th sample > Initial proposal SDfile:/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/diff/lh.cst_AS_av > g33_m > ni_bbr_cpts_6_std.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/d > iff/rh.cst_AS_avg33_m > ni_bbr_cpts_6_std.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/d > iff/lh.unc_AS_avg33_m > ni_bbr_cpts_5_std.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/d > iff/rh.unc_AS_avg33_m > ni_bbr_cpts_5_std.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/d > iff/lh.ilf_AS_avg33_m > ni_bbr_cpts_5_std.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/d > iff/rh.ilf_AS_avg33_m > ni_bbr_cpts_5_std.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/d > iff/fmajor_PP_avg33_m > ni_bbr_cpts_7_std.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/d > iff/fminor_PP_avg33_m > ni_bbr_cpts_5_std.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/d > iff/lh.atr_PP_avg33_m > ni_bbr_cpts_5_std.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/d > iff/rh.atr_PP_avg33_m > ni_bbr_cpts_5_std.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/d > iff/lh.ccg_PP_avg33_m > ni_bbr_cpts_5_std.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/d > iff/rh.ccg_PP_avg33_m > ni_bbr_cpts_5_std.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/d > iff/lh.cab_PP_avg33_m > ni_bbr_cpts_4_std.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/d > iff/rh.cab_PP_avg33_m > ni_bbr_cpts_4_std.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/d > iff/lh.slfp_PP_avg33_ > mni_bbr_cpts_5_std.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/ > diff/rh.slfp_PP_avg33_ > mni_bbr_cpts_5_std.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/ > diff/lh.slft_PP_avg33_ > mni_bbr_cpts_5_std.txt/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/ > diff/rh.slft_PP_avg33_ > mni_bbr_cpts_5_std.txt > Loading DWIs from > /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dmri/dwi.nii.gz > Loading maskfrom/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dlabel/diff/aparc+aseg_m > ask. > bbr.nii.gz > Loading BEDPOST parameter samples from > /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dmri.bedpostX > Loading b-values from > /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dmri/bvals > Loading gradients from > /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_104/dmri/bvecs > INFO: Found 10 baseline images (b = 0) out of a total of 70 frames > INFO: Found 182362 voxels in brain mask > INFO: Resolution of DWI space relative to base space is (1, 1, 1) > Loading atlas reference volumefrom/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/lh.cst_AS_avg3 > 3_mn > i_bbr_end1_dil.nii.gz > niiRead(): error openingfile/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/lh.cst_AS_avg3 > 3_mn > i_bbr_end1_dil.nii.gz > ERROR: Could notread/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/BW_104/dlabel/mni/lh.cst_AS_avg3 > 3_mn > i_bbr_end1_dil.nii.gz > Linux cerebro 2.6.32-358.2.1.el6.x86_64 #1 SMP Wed Mar 13 00:26:49 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux > > trac-paths exited with ERRORS at Wed Aug 14 13:37:20 EDT 2013 > > > > > > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the e-mail > contains patient information, please contact the Partners Compliance HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in error > but does not contain patient information, please contact the sender and properly > dispose of the e-mail. > > > >

2 3

TCL script not exiting
by Greg Book 14 Aug '13

14 Aug '13

I have a bash script which calls a .tcl script through which I'm running tksurfer. It works, except the script is no longer exiting when it reaches the end. Instead, it displays the tksurfer window and stays open. After I click the menu option to Quit, the script continues. Below is the script open_window set lablpth "$env(SUBJECTS_DIR)/$env(SUBJECT_NAME)/label" set outpth "$env(SUBJECTS_DIR)/$env(SUBJECT_NAME)/shots" labl_import_annotation "$lablpth/$hemi.$env(PARC).annot" redraw UpdateAndRedraw puts "Taking Snapshots..." if {![file exists "$outpth/$env(SUBJECT_NAME)_${hemi}_$env(SURF)_$env(PARC)_lat.tif"]} { make_lateral_view redraw set tiff "$outpth/$env(SUBJECT_NAME)_${hemi}_$env(SURF)_$env(PARC)_lat.tif" save_tiff $tiff } if {![file exists "$outpth/$env(SUBJECT_NAME)_${hemi}_$env(SURF)_$env(PARC)_med.tif"]} { make_lateral_view rotate_brain_y 180 redraw set tiff "$outpth/$env(SUBJECT_NAME)_${hemi}_$env(SURF)_$env(PARC)_med.tif" save_tiff $tiff } exit(0)

2 3

Re: [Freesurfer] Tracula failed
by Anastasia Yendiki 14 Aug '13

14 Aug '13

Why do you want to use a '$'? On Wed, 14 Aug 2013, Alan Francis wrote: > Hi Anastasia: > > Yes the path that you pointed out is the one I presently use. Is there no way to use the '$' as a substitute? > > thanks, > > Alan > > > On Wed, Aug 14, 2013 at 1:46 PM, Anastasia Yendiki <ayendiki(a)nmr.mgh.harvard.edu> wrote: > > Alan - Where is the location that has plenty of space? You should set your SUBJECTS_DIR to that location, > e.g., > > setenv SUBJECTS_DIR /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons > > > On Wed, 14 Aug 2013, Alan Francis wrote: > > Hi Anastasia/ FreeSurfers > > I did not use the conventional path usr/local/freesurfer. since there is very little disc space in > this location. > Alternately I set the environment at a location where is plenty of disc space and then sourced it. > > For the SUBJECTS_DIR I set the environment without using the dollar sign $. > > The Freesurfer recons and Tracula ran without problem and saved the processed data to this > location. So the > FReeSurfer recons and tracula data are in the same location. > > Now I am trying to use the dollar sign, so that I can extract the trac data, but I keep getting the > error message. > > csh::alanf@cerebro [/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons] : > setenv > SUBJECTS_DIR $FreeSurfer_Data/diffusion_recons > > FreeSurfer_Data: Undefined variable. > > > thanks, > > Alan > > > On Wed, Aug 14, 2013 at 1:08 PM, Anastasia Yendiki <ayendiki(a)nmr.mgh.harvard.edu> wrote: > > Where did you get this command line? You should set the SUBJECTS_DIR to the location on disk where > your > freesurfer recons are. > > > On Wed, 14 Aug 2013, Alan Francis wrote: > > Hi Anastasia: > > I fixed that problem - thank you. However, I have another question. i am trying extract trac data > but when I set > environment, I get an error message: > > csh::alanf@cerebro > [/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons] : setenv > SUBJECTS_DIR $FreeSurfer_Data/diffusion_recons > > FreeSurfer_Data: Undefined variable. > > How do I solve this? > > Thanks again, > > Alan > > > > On Wed, Aug 14, 2013 at 11:06 AM, Anastasia Yendiki <ayendiki(a)nmr.mgh.harvard.edu> wrote: > > Hi Alan - I'm not sure where the output from the one subject ends the the other starts. For > future > reference, it's best to attach the entire trac-all.log files instead of copying and pasting > parts of them > into your message. > > I see two error messages here: > 1. "ERROR: must specify as many DWI dicoms as subjects" > This is as it says. Check your configuration file and see if the numbers of entries in > subjlist and > dcmlist are the same. > > 2. "ERROR: reading > > > /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//118/dmri/dwi_frame.nii.gz" > I'm guessing the problem is in the b-value table. How many entries are there that correspond > to low-b > images? > > a.y > > On Tue, 13 Aug 2013, Alan Francis wrote: > > Hi Anastasia: > > Thanks to your advice most of the data have been processed using Tracula. Two brains gave me > error > messages that are > as follows: > > > csh::alanf@cerebro > [/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons] : trac-all > -prep > -c /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/dmrirc-124 > ERROR: must specify as many DWI dicoms as subjects > csh::alanf@cerebro > [/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons] : trac-all > -prep > -c /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/dmrirc-118 > INFO: SUBJECTS_DIR is > /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons > INFO: Diffusion root is > /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/ > Actual FREESURFER_HOME /autofs/cluster/freesurfer/centos6_x86_64/stable5_3_0 > trac-preproc -c > > > /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//118/scripts/dmrirc.local > -log > > > /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//118/scripts/trac-all.log > -cmd > > > /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//118/scripts/trac-all.cmd > #------------------------------------- > /usr/local/freesurfer/stable5_3_0//bin/trac-preproc > #------------------------------------- > #@# Image corrections Mon Aug 12 17:11:05 EDT 2013 > mri_convert/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//118/Diffusion_Recons/200 > > > 90224_14110 > 2DIFFUSIONHighRess016a001.nii > > > /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//118/dmri/dwi_orig.nii.gz > mri_convert/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//118/Diffusion_Recons/200 > > > 90224_14110 > 2DIFFUSIONHighRess016a001.nii > > /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//118/dmri/dwi_orig.nii.gz > $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $ > readingfrom/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//118/Diffusion_Recons/200 > > 90224_1 > 4110 > 2DIFFUSIONHighRess016a001.nii... > TR=7640.00, TE=0.00, TI=0.00, flip angle=0.00 > i_ras = (-0.997762, -0.0667414, -0.00403802) > j_ras = (-0.0662713, 0.979101, 0.192276) > k_ras = (0.00887916, -0.192114, 0.981333) > writing to > > /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//118/dmri/dwi_orig.nii.gz... > cp > > /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/118/Diffusion_Recons/118.bvecs > > /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//118/dmri/dwi_orig.mghdti.bvecs > cp > > /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/118/Diffusion_Recons/118.bvals > > /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//118/dmri/dwi_orig.mghdti.bvals > flip4fsl > > /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//118/dmri/dwi_orig.nii.gz > > /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//118/dmri/dwi_orig_flip.nii.gz > INFO: input image orientation is LAS > INFO: input image determinant is -6.8719 > fslswapdim > > /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//118/dmri/dwi_orig.nii.gz > x y z > > /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//118/dmri/dwi_orig_flip.nii.gz > fslorient -forceradiological > > /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//118/dmri/dwi_orig_flip.nii.gz > INFO: found > > /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//118/dmri/dwi_orig.mghdti.bvals, > converting to FSL format > INFO: found > > /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//118/dmri/dwi_orig.mghdti.bvecs, > converting to FSL format > mv-f/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//118/dmri/dwi_orig_flip.mghdti.b > > ve > cs > /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//118/dmri/bvecs > mv-f/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//118/dmri/dwi_orig_flip.mghdti.b > > va > ls > /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//118/dmri/bvals > eddy_correct > /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//118/dmri/dwi_orig_flip.nii.gz > /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//118/dmri/dwi.nii.gz 0 > processing > /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//118/dmri/dwi_tmp0000 > processing > /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//118/dmri/dwi_tmp0001 > processing > /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//118/dmri/dwi_tmp0002 > processing > /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//118/dmri/dwi_tmp0003 > processing > /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//118/dmri/dwi_tmp0004 > processing > /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//118/dmri/dwi_tmp0005 > processing > /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//118/dmri/dwi_tmp0006 > processing > /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//118/dmri/dwi_tmp0007 > processing > /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//118/dmri/dwi_tmp0008 > processing > /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//118/dmri/dwi_tmp0009 > processing > /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//118/dmri/dwi_tmp0010 > processing > /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//118/dmri/dwi_tmp0011 > processing > /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//118/dmri/dwi_tmp0012 > processing > /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//118/dmri/dwi_tmp0013 > processing > /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//118/dmri/dwi_tmp0014 > processing > /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//118/dmri/dwi_tmp0015 > processing > /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//118/dmri/dwi_tmp0016 > processing > /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//118/dmri/dwi_tmp0017 > processing > /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//118/dmri/dwi_tmp0018 > processing > /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//118/dmri/dwi_tmp0019 > processing > /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//118/dmri/dwi_tmp0020 > processing > /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//118/dmri/dwi_tmp0021 > processing > /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//118/dmri/dwi_tmp0022 > processing > /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//118/dmri/dwi_tmp0023 > processing > /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//118/dmri/dwi_tmp0024 > processing > /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//118/dmri/dwi_tmp0025 > processing > /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//118/dmri/dwi_tmp0026 > processing > /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//118/dmri/dwi_tmp0027 > processing > /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//118/dmri/dwi_tmp0028 > processing > /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//118/dmri/dwi_tmp0029 > processing > /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//118/dmri/dwi_tmp0030 > processing > /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//118/dmri/dwi_tmp0031 > processing > /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//118/dmri/dwi_tmp0032 > processing > /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//118/dmri/dwi_tmp0033 > processing > /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//118/dmri/dwi_tmp0034 > processing > /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//118/dmri/dwi_tmp0035 > processing > /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//118/dmri/dwi_tmp0036 > processing > /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//118/dmri/dwi_tmp0037 > processing > /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//118/dmri/dwi_tmp0038 > processing > /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//118/dmri/dwi_tmp0039 > processing > /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//118/dmri/dwi_tmp0040 > processing > /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//118/dmri/dwi_tmp0041 > processing > /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//118/dmri/dwi_tmp0042 > processing > /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//118/dmri/dwi_tmp0043 > processing > /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//118/dmri/dwi_tmp0044 > processing > /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//118/dmri/dwi_tmp0045 > processing > /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//118/dmri/dwi_tmp0046 > processing > /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//118/dmri/dwi_tmp0047 > processing > /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//118/dmri/dwi_tmp0048 > processing > /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//118/dmri/dwi_tmp0049 > processing > /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//118/dmri/dwi_tmp0050 > processing > /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//118/dmri/dwi_tmp0051 > processing > /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//118/dmri/dwi_tmp0052 > processing > /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//118/dmri/dwi_tmp0053 > processing > /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//118/dmri/dwi_tmp0054 > processing > /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//118/dmri/dwi_tmp0055 > processing > /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//118/dmri/dwi_tmp0056 > processing > /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//118/dmri/dwi_tmp0057 > processing > /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//118/dmri/dwi_tmp0058 > processing > /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//118/dmri/dwi_tmp0059 > processing > /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//118/dmri/dwi_tmp0060 > processing > /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//118/dmri/dwi_tmp0061 > processing > /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//118/dmri/dwi_tmp0062 > processing > /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//118/dmri/dwi_tmp0063 > processing > /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//118/dmri/dwi_tmp0064 > processing > /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//118/dmri/dwi_tmp0065 > processing > /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//118/dmri/dwi_tmp0066 > processing > /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//118/dmri/dwi_tmp0067 > processing > /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//118/dmri/dwi_tmp0068 > processing > /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//118/dmri/dwi_tmp0069 > mv -f /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//118/dmri/bvecs > /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//118/dmri/bvecs.norot > xfmrot > /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//118/dmri/dwi.ecclog > /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//118/dmri/bvecs.norot > /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//118/dmri/bvecs > ln -sf > /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//118/dmri/dwi.nii.gz > /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//118/dmri/data.nii.gz > awk: cmd. line:1: fatal: cannot open file `0' for reading (No such file or directory) > mri_concat --i > /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//118/dmri/dwi_frame.nii.gz > --mean --o > /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//118/dmri/lowb.nii.gz > niiRead(): error opening file > /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//118/dmri/dwi_frame.nii.gz > ninputs = 1 > Checking inputs > ERROR: reading > /autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//118/dmri/dwi_frame.nii.gz > Linux cerebro 2.6.32-358.2.1.el6.x86_64 #1 SMP Wed Mar 13 00:26:49 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux > > trac-preproc exited with ERRORS at Mon Aug 12 17:30:05 EDT 2013 > > As always - thanks for your help, > > best, > > Alan > > Martinos Center. > > > > > > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the e-mail > contains patient information, please contact the Partners Compliance HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in error > but does not contain patient information, please contact the sender and properly > dispose of the e-mail. > > > > > > > >

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