Freesurfer

freesurfer@nmr.mgh.harvard.edu

19 participants
30088 discussions

PETsurfer issue
by Mackenzie Leigh Carlson 31 Oct '19

31 Oct '19

External Email - Use Caution Hello, Wondering if anyone has had issues with PETsurfer partial volume correction. When I have used it, there are large 'holes' in the white matter. I am mostly interested in the hippocampal area, which seems unaffected by these holes, but I'm not sure if I should trust the outcome enough to still use PVC maps for the hippocampus! Any help is appreciated. Thank you! I am running this: mri_gtmpvc --i SUV-30-60-float-FixedSlope.nii.gz --reg SUVtoFS.reg.lta --psf 5 --seg gtmseg.mgz --default-seg-merge --auto-mask PSF .01 --mgx .01 --o gtmpvc.output.nopons --no-rescale -- Mackenzie L. Carlson PhD Candidate in Bioengineering | Stanford University BA Engineering Sciences | Dartmouth College (218) 269-7473

2 1

mac gcc builds
by Hoopes, Andrew 30 Oct '19

30 Oct '19

Notice to all mac FS developers, GCC builds on macOS have become increasingly difficult to maintain, mostly due to brew issues and gcc-version incompatibles with dependencies. Clang is now the "official" mac compiler for freesurfer. The external prebuilt packages (at https://surfer.nmr.mgh.harvard.edu/pub/data/fspackages/prebuilt/osx10.11-pa…) have been updated accordingly. best, Andrew

1 0

imperfect segmentation in the occipital lobe in epilepsy patient
by Xiaoqian Yan 30 Oct '19

30 Oct '19

External Email - Use Caution Dear Freesurfer experts, I am trying to do the segmentation on a patient's T1 image. I did not get error messages running the 'recon-all' (recon-all -i T1.nii -subjid PatientName -all), but the segmentation over the right occipital lobe was imperfect, which caused failures to map the functional activations in this region onto the surface. I tried to manually edit the wm.mgz several times, but the output did not change a lot (please see the attached image). The patient had depth EEG electrodes implanted in this region before, so there is a thermal lesion which I thought could have caused the bad segmentation. Do you have any ideas about what I can do next, or it is possible for you to help me editing the data? Thanks in advance, best wishes Xiaoqian

4 8

nuisance factors
by Georgina Angelopoulou 30 Oct '19

30 Oct '19

External Email - Use Caution Thank you very much! That makes a lot of sense. However, when I tried to run the analysis using that contrast (0.5 0.5 -0.5 -0.5 0), the following error appears: dimension mismatch between X and contrast Contrasts/age_sim.mtx X has 4 cols, C has 5 cols My fsgd file contains the following info: Title CMTX Class patientmale Class patientfemale Class controlmale Class controlfemale Variables age Any ideas of how to resolve it? Thanks once again, Georgina

2 1

Matrix is ill-conditioned or badly scaled
by Benjamin Ineichen 30 Oct '19

30 Oct '19

External Email - Use Caution Hi, I am having trouble with the mri_glmfit with the following error message and I was not able to find a solution on the mail archive: ERROR: matrix is ill-conditioned or badly scaled, condno = 1e+08 -------------------------------- Possible problem with experimental design: Check for duplicate entries and/or lack of range of continuous variables within a class. If you seek help with this problem, make sure to send: 1. Your command line: mri_glmfit.bin --y NFLclasscov.thickness.00.mgh --fsgd GLM4.fsgd.txt dods --C contrast4.mtx.txt --surf fsaverage lh --cortex --glmdir NFLclasscov.glmdir 2. The FSGD file (if using one) 3. And the design matrix above Attempting to diagnose further SumSq: Min=0.383673 (col 10), Max=7.173570 (col 15) The scale is much different between columns 10 and 15, you may want to normalize by subtracting the mean and dividing by the standard deviation. I get this error with both the non-demeaned and demeaned FSGD file (as suggested at the end of the error message). Both the non-demeaned (GLM3) and the demeaned FSGD files (GLM4) are attached, contrast file attached. Not sure if you also need the design matrix depicted in the command line, it would be at the end of the email. My questions: 1.) Do you see where the problem is? 2.) Would the contrast be correct for testing cortical thickness between NFL-low and NFL-high. Many thanks for your support! Best regards, Ben Design matrix ------------------ 1.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 1.21322 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -0.47975 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -0.07738 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000; 1.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.90977 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 3.25685 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -0.50014 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000; 0.00000 0.00000 0.00000 0.00000 1.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.60709 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 3.37385 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -0.50755 0.00000 0.00000 0.00000; 1.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.58764 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 3.24083 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -0.15618 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000; 0.00000 0.00000 0.00000 0.00000 1.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.40956 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -0.45256 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -0.69853 0.00000 0.00000 0.00000; 0.00000 0.00000 0.00000 0.00000 1.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.43975 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -0.62150 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -0.47325 0.00000 0.00000 0.00000; 0.00000 0.00000 0.00000 0.00000 1.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.54849 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 1.80338 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -0.17658 0.00000 0.00000 0.00000; 0.00000 0.00000 0.00000 0.00000 1.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.47864 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -0.12973 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -0.37312 0.00000 0.00000 0.00000; 1.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.17109 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.09941 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -0.60490 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000; 0.00000 0.00000 0.00000 0.00000 1.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.13348 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -0.63267 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -1.13983 0.00000 0.00000 0.00000; 0.00000 0.00000 0.00000 0.00000 1.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.21075 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.51059 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -0.83203 0.00000 0.00000 0.00000; 1.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.23327 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -0.60985 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.12565 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000; 0.00000 0.00000 0.00000 0.00000 1.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -0.13568 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -0.65791 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -0.87932 0.00000 0.00000 0.00000; 0.00000 0.00000 0.00000 0.00000 1.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.03933 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -0.63752 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.28882 0.00000 0.00000 0.00000; 0.00000 0.00000 0.00000 0.00000 0.00000 1.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -0.23675 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -0.37926 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -2.96527 0.00000 0.00000; 0.00000 0.00000 0.00000 0.00000 1.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -0.53534 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -0.55063 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -1.07030 0.00000 0.00000 0.00000; 1.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -0.03769 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.15427 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.48814 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000; 0.00000 0.00000 0.00000 0.00000 0.00000 1.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -0.06097 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 1.27520 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -0.95163 0.00000 0.00000; 0.00000 0.00000 0.00000 0.00000 1.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -0.75436 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -0.53266 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -0.97017 0.00000 0.00000 0.00000; 0.00000 0.00000 0.00000 0.00000 1.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -0.30097 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -0.63073 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.60218 0.00000 0.00000 0.00000; 0.00000 1.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -0.33679 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -0.19769 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -1.93806 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000; 0.00000 0.00000 0.00000 0.00000 0.00000 1.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -0.59291 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -0.29819 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -2.67139 0.00000 0.00000; 0.00000 0.00000 0.00000 0.00000 1.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -0.48008 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -0.50693 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00328 0.00000 0.00000 0.00000; 0.00000 0.00000 0.00000 0.00000 1.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -0.85543 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -0.68995 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -0.48901 0.00000 0.00000 0.00000; 0.00000 0.00000 0.00000 0.00000 1.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -0.54967 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -0.43169 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.57715 0.00000 0.00000 0.00000; 0.00000 0.00000 0.00000 0.00000 0.00000 1.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -1.07803 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00863 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -3.55490 0.00000 0.00000; 0.00000 0.00000 0.00000 0.00000 1.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -1.20724 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -0.56859 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -0.67814 0.00000 0.00000 0.00000; 0.00000 0.00000 0.00000 0.00000 1.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -1.30933 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -0.25546 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -0.56132 0.00000 0.00000 0.00000; 0.00000 0.00000 0.00000 0.00000 1.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -1.41423 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -0.69432 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -0.49643 0.00000 0.00000 0.00000; 0.00000 1.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -0.04511 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.46690 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -1.04619 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000; 0.00000 0.00000 0.00000 0.00000 1.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.07336 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.13873 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.53635 0.00000 0.00000 0.00000; 0.00000 0.00000 0.00000 0.00000 1.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -0.26310 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -0.69675 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.36206 0.00000 0.00000 0.00000; 1.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -0.24622 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -0.59869 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.71343 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000; 0.00000 0.00000 0.00000 0.00000 0.00000 1.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -0.39078 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.62079 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -2.91336 0.00000 0.00000; 0.00000 0.00000 0.00000 0.00000 1.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 1.75744 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.16058 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 2.21532 0.00000 0.00000 0.00000; 1.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 1.02798 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.74847 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.67449 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000; 0.00000 0.00000 0.00000 0.00000 1.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.50628 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.37515 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.40100 0.00000 0.00000 0.00000; 0.00000 0.00000 0.00000 0.00000 1.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -0.41611 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -0.06128 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.54655 0.00000 0.00000 0.00000; 0.00000 0.00000 0.00000 0.00000 1.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.64828 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -0.66519 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.64111 0.00000 0.00000 0.00000; 0.00000 0.00000 0.00000 0.00000 1.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.12581 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -0.69384 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.21836 0.00000 0.00000 0.00000; 0.00000 0.00000 0.00000 0.00000 1.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -0.74796 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -0.59577 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -0.78290 0.00000 0.00000 0.00000; 0.00000 1.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -0.17816 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.50817 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.59476 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000; 1.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 1.18815 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -0.41712 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.90163 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000; 1.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.30312 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -0.41324 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 1.11022 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000; 1.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 1.23497 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -0.42441 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.92666 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000; 0.00000 0.00000 0.00000 0.00000 1.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -0.08221 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -0.64675 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -2.61854 0.00000 0.00000 0.00000; 0.00000 0.00000 0.00000 0.00000 1.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -1.44442 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -0.51713 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.86825 0.00000 0.00000 0.00000; 1.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.25834 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -0.62344 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -1.06010 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000; 1.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -1.36204 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -0.52247 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.60774 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000; 0.00000 0.00000 0.00000 0.00000 1.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 1.45425 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -0.35838 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.52801 0.00000 0.00000 0.00000; 0.00000 0.00000 0.00000 0.00000 1.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -0.93270 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -0.68073 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.65873 0.00000 0.00000 0.00000; 0.00000 0.00000 0.00000 0.00000 1.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -1.58310 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -0.52829 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.70879 0.00000 0.00000 0.00000; 1.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -0.01927 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -0.64966 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -2.12533 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000; 0.00000 0.00000 0.00000 0.00000 1.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 1.01416 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 1.45530 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.57066 0.00000 0.00000 0.00000; 0.00000 0.00000 0.00000 0.00000 1.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.60120 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -0.31906 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -1.18989 0.00000 0.00000 0.00000; 0.00000 0.00000 0.00000 0.00000 1.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 1.30329 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.48244 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.54099 0.00000 0.00000 0.00000; 0.00000 0.00000 0.00000 0.00000 1.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.30133 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -0.65257 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -0.04493 0.00000 0.00000 0.00000; 0.00000 0.00000 0.00000 0.00000 1.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -1.23027 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -0.69384 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.02645 0.00000 0.00000 0.00000; 0.00000 0.00000 0.00000 0.00000 1.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -0.61901 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -0.68558 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.09042 0.00000 0.00000 0.00000; 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 1.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 2.68802 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 1.33200 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.57158 0.00000; 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 1.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 1.92913 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -0.26809 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -0.49457 0.00000; 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 1.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 2.08776 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 1.82960 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -0.52053 0.00000; 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 1.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 1.47472 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 3.96854 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -1.13149; 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 1.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 1.48495 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -0.21711 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -0.03381 0.00000; 0.00000 0.00000 1.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 1.14312 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -0.20886 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -0.15155 0.00000 0.00000 0.00000 0.00000 0.00000; 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 1.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 1.10090 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -0.63849 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -0.54556 0.00000; 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 1.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 1.37672 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -0.25595 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.36855 0.00000; 0.00000 0.00000 0.00000 1.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.80589 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -0.49286 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -1.86945 0.00000 0.00000 0.00000 0.00000; 0.00000 0.00000 1.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.87446 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -0.40499 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.15068 0.00000 0.00000 0.00000 0.00000 0.00000; 0.00000 0.00000 1.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.32692 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -0.26857 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -0.33233 0.00000 0.00000 0.00000 0.00000 0.00000; 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 1.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.67259 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -0.67102 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.61145 0.00000; 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 1.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.17544 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 1.48006 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -0.33604 0.00000; 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 1.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.02244 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -0.54237 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -0.41206 0.00000; 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 1.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -0.61082 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.26204 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -0.70224 0.00000; 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 1.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -0.73389 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -0.66811 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -0.97481 0.00000; 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 1.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -0.23470 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -0.33605 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 1.09910 0.00000; 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 1.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -0.51641 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.21640 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.26286 0.00000; 0.00000 0.00000 1.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -0.70524 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -0.30304 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -0.58636 0.00000 0.00000 0.00000 0.00000 0.00000; 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 1.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -0.81756 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.23145 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.28511 0.00000; 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 1.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -0.84519 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -0.43460 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.26193 0.00000; 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 1.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -0.90737 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -0.42198 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.94891 0.00000; 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 1.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -0.60033 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.04989 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 1.84912 0.00000; 0.00000 0.00000 1.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -1.42651 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -0.63510 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -1.17320 0.00000 0.00000 0.00000 0.00000 0.00000; 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 1.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -1.24332 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -0.47586 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.28233 0.00000; 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 1.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -1.27428 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -0.35013 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.78111 0.00000; 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 1.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -1.70361 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -0.55014 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.39080 0.00000; 0.00000 0.00000 1.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -1.55342 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -0.24284 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.53079 0.00000 0.00000 0.00000 0.00000 0.00000; 0.00000 0.00000 1.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -1.92800 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -0.66374 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.65224 0.00000 0.00000 0.00000 0.00000 0.00000; 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 1.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -1.73201 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -0.36906 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.63370; 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 1.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.63497 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -0.66617 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.55675 0.00000; 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 1.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.13118 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.14698 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.68376 0.00000; 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 1.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -1.36715 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -0.68316 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.62350 0.00000; 0.00000 0.00000 1.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -1.54472 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -0.65937 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.64760 0.00000 0.00000 0.00000 0.00000 0.00000; 0.00000 0.00000 1.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -0.01261 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.85382 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 1.40318 0.00000 0.00000 0.00000 0.00000 0.00000; 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 1.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.82764 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -0.18701 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 1.07036 0.00000; 0.00000 0.00000 1.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -1.21491 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -0.68219 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.57900 0.00000 0.00000 0.00000 0.00000 0.00000; 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 1.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -0.22907 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -0.63267 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -2.82157; 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 1.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 1.32913 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 2.90829 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.99619 0.00000; 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 1.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -0.80016 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -0.45111 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.62906 0.00000; 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 1.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -1.89653 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -0.55305 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.65873; 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 1.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 1.28896 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.23485 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 1.14545 0.00000; 0.00000 0.00000 1.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.07182 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -0.53024 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.61516 0.00000 0.00000 0.00000 0.00000 0.00000; 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 1.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -0.20809 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -0.57150 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.64853 0.00000; 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 1.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -0.72391 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -0.69481 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.64946 0.00000; 0.00000 0.00000 1.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -0.88204 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.55234 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.01533 0.00000 0.00000 0.00000 0.00000 0.00000; 0.00000 0.00000 1.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -1.24152 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -0.58752 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.60959 0.00000 0.00000 0.00000 0.00000 0.00000; 0.00000 0.00000 1.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 1.58013 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 2.97432 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.45384 0.00000 0.00000 0.00000 0.00000 0.00000; 0.00000 0.00000 0.00000 1.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -0.20835 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 1.80824 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -0.16175 0.00000 0.00000 0.00000 0.00000; 0.00000 0.00000 1.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -0.16613 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -0.53897 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.91739 0.00000 0.00000 0.00000 0.00000 0.00000; 0.00000 0.00000 1.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.11736 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -0.10109 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.61330 0.00000 0.00000 0.00000 0.00000 0.00000; 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 1.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 1.80785 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -0.69335 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.63926 0.00000; 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 1.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 1.65945 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 1.21840 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.69489 0.00000; 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 1.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -1.46515 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -0.68364 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.54841 0.00000; 0.00000 0.00000 1.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -0.52818 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -0.64626 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.67727 0.00000 0.00000 0.00000 0.00000 0.00000; 0.00000 0.00000 1.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 1.65715 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.76838 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.69581 0.00000 0.00000 0.00000 0.00000 0.00000; 0.00000 0.00000 1.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.78772 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -0.65937 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.61886 0.00000 0.00000 0.00000 0.00000 0.00000; 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 1.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.35352 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -0.64432 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.61423 0.00000; 0.00000 0.00000 1.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.29109 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.87372 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.60310 0.00000 0.00000 0.00000 0.00000 0.00000; 0.00000 0.00000 0.00000 1.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.28700 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -0.07342 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.15717 0.00000 0.00000 0.00000 0.00000; 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 1.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.67310 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 2.68449 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.53264 0.00000; 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 1.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 1.93783 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -0.62102 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.63555 0.00000; 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 1.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -0.61185 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 -0.69238 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.65317 0.00000; --------

2 1

registration
by Nader Razmara 30 Oct '19

30 Oct '19

External Email - Use Caution Instead of mri_cvs_register Which type of registration is more accurate or coparative to this. Best Regards Nader

1 0

nuisance factors
by Georgina Angelopoulou 30 Oct '19

30 Oct '19

External Email - Use Caution Dear FreeSurfer Developers, I am trying to design a matrix in order to run a group comparison analysis and I would like to verify if I am following the right steps. I have read a lot of things in the forum, but I got confused regarding how to treat nuisance factors. I have two groups (patients and controls) and I want to test if there is a significant difference in cortical thickness regressing out the effects of age and sex. My fsgd file is ControlMales ControlFemales PatientMales PatientFemales Again, based on what I have read so far, in order to use the age as a nuisance variable, I first tested the age slopes using the row values of age (meaning without centering them), is that correct? Since there is no significant difference in age slopes, that means that now I can run the analysis without including the age at all as a nuisance variable in the model? (what you usually refer as DOSS?) with the contrast matrix 0.5 0.5 -0.5 0.5 (meaning that I only control for the effect of sex)? Thank you in advance, Georgina

2 1

question about qdec 'Generate Stats Data Tables'
by 艺 30 Oct '19

30 Oct '19

External Email - Use Caution Hello, We had a problem when using QDEC for group analysis. After generating relevant files, I press 'Load Data Tabel' button to load my file 'qdec.tabel.dat'. But when I press the 'Generate Stats Data Tables' button, a popup window shows an error indicating that: --------------------------------------------------------------------------------------------------------------------- ERROR: In /usr/pubsw/packages/KWWidgets/CVS-vtk560/KWWidgets/vtKWTkUtilities.cxx,line230 vtKWQdecApp (0x27fbfce0): Script: vtKTemp2 GenetateStatsDataTables Returened Error on line 1: Uncaught exception: command failed: asegstats2table --common-segs --meas volume --tablefile /usr/local/freesurfer/subjects/qdec/stats_tables/aseg.volume.stats.dat --statsfile=aseg.stats --subjects PT1_01 PT1_03 PT1_04 PT1_06 PT1_11 PT1_12 PT1_14 PT1_27 PT1_32 PT1_33 PT1_34 PT1_47 PT1_55 PT1_05 PT1_08 PT1_09 PT1_16 PT1_18 PT1_19 PT1_20 PT1_21 PT1_23 PT1_24 PT1_26 PT1_38 PT1_45 PT1_48 PT1_52 PT1_75 PT1_81 PT1_87 Stack trace: Uncaught exception: command failed: asegstats2table --common-segs --meas volume --tablefile /usr/local/freesurfer/subjects/qdec/stats_tables/aseg.volume.stats.dat --statsfile=aseg.stats --subjects PT1_01 PT1_03 PT1_04 PT1_06 PT1_11 PT1_12 PT1_14 PT1_27 PT1_32 PT1_33 PT1_34 PT1_47 PT1_55 PT1_05 PT1_08 PT1_09 PT1_16 PT1_18 PT1_19 PT1_20 PT1_21 PT1_23 PT1_24 PT1_26 PT1_38 PT1_45 PT1_48 PT1_52 PT1_75 PT1_81 PT1_87 while executing "vtkTemp2 GenerateStatsDataTables" --------------------------------------------------------------------------------------------------------------------- Before that we were able to successfully ‘Generate Stats Data Tables’  (for our data but not all of the above data). We don't know if it is a server environment or something else. What‘s wrong? Please, could you advise me? Best regards,   Adam

2 1

Mapping coordinates from sphere file to ?h.white
by Oscar Esteban 30 Oct '19

30 Oct '19

External Email - Use Caution Dear experts, In the context of the BIDS transforms extension and the ".x5" format we chatted about in the workshop we made in March at MIT, we are addressing the following question. We have a sphere of fsLR coordinates in fsaverage space (e.g., https://github.com/Washington-University/HCPpipelines/blob/master/global/te… - but the question extends to the right hemisphere and also resolutions other than 59k). We want to expand this sphere to the fsaverage's white surface (lh.white, in this example). Since coordinates on the fsLR sphere don't match any of fsaverage{,3,4,5,6}'s coordinates, we wonder whether FreeSurfer stores somewhere/somehow the analytical transform of this mapping. In other words, how one would map arbitrary coordinates on the surface to a particular fsaverage's white (or midthickness, or pial, etc.) surface. Otherwise, I guess I would pick fsaverage's surfaces (i.e., 7th degree icosahedron), and interpolate the displacement vectors that start at each sample on the surface and end at the corresponding location of that vertex index of the destination surface (lh.white for the example above). Is there any tool that actually does the _inverse transform of the surface-to-sphere mapping_? Thanks very much. Regards, Oscar -- *___________________________* *Oscar Esteban, Ph.D.* Postdoctoral Fellow, Poldrack Lab Stanford University +1 (650) 733 33 82

2 1

recon-all -skullstrip issues
by Adam Rytina 30 Oct '19

30 Oct '19

External Email - Use Caution Hello all, I´m struggling with running "recon-all -skullstrip", in general with "recon-all". I added NIfTI series file to a new directory "QWE" (/usr/local/freesurfer/subjects/QWE) and running the skull stripping "mri_watershed /usr/local/freesurfer/subjects/QWE/ser.nii /usr/local/freesurfer/subjects/QWE/brainwithout.nii" without any proble. However, when trying to adjust watershed parameters the problem occurs. "recon-all -skullstrip -wsthresh 5 -clean-bm -subjid QWE". There are afterwards some errors occuring: "mv: cannot stat '/usr/local/freesurfer/subjects/QWE/mri/brainmask.mgz': No such file or directory", "mghRead(/usr/local/freesurfer/subjects/QWE/mri/nu.mgz, -1): could not open file mri_em_register: could not open input volume nu.mgz." I´m working with image series "ser.nii" and "brainwithout.nii", not with "brainmask.mgz" and "nu.mgz" in the tutorial. Please, where is the problem? Thanks a lot Adam [https://ipmcdn.avast.com/images/icons/icon-envelope-tick-round-orange-anima…]<https://www.avast.com/sig-email?utm_medium=email&utm_source=link&utm_campai…> Bez virů. www.avast.com<https://www.avast.com/sig-email?utm_medium=email&utm_source=link&utm_campai…>

2 3

Jump to page:

2026

2025

2024

2023

2022

2021

2020

2019

2018

2017

2016

2015

2014

2013

2012

2011

2010

2009

2008

2007

2006

2005

2004

Freesurfer