Re: [Freesurfer] aseg stats on 001.mgz

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I was wondering if anyone could help me figure this out (or point me to a link that could help me figure this out).

Thanks Dan

On Fri, Jan 15, 2021 at 4:10 PM dg wakeman dgwakeman@gmail.com wrote:

Hi,

I can't seem to figure out the best way to load the aseg and the raw mgz file in the same space. Is there a registration file somewhere that I can use for that. I can see that FreeView can see this, but I am having trouble figuring out the right way to do this. What I need for this one instance is just to pull the mean intensity of a label from the aseg?

For future reference it would be great to know how to do this generically. e.g. if I read in the data in matlab/python, how do I line them up.

Thanks Dan