In the terminal output it says that your movable volume is
/Users/djsandoval/Desktop/Selwyn/M87127996-2016004/Baseline/PETCT/PET/PET BRAIN TOF STATIC 2/2016004A/IM-0001-0001.dcm
not template.nii.gz. In principle, that should be fine, except that there are spaces in the path
On 01/25/2017 04:34 PM, Anderson Napolitano wrote:
Hello Experts!
I am having trouble checking the registration per step 2 of the pet surfer tutorial: http://freesurfer.net/fswiki/PetSurfer. The line: mri_coreg --s subject --mov template.nii.gz --reg template.reg.lta worked just fine but when checking the registration using the line: tkregisterfv --mov template.nii.gz --reg template.reg.lta --surfs I get the following output: set: Variable name must begin with a letter As suggested by Dr. Greve, I've attached a text file documenting the input, the output and the output with the debug flag on. Please let me know if I can provide you any further details and I will get to it as soon as I can. Thank you very much for your time. Warmest Regards, Anderson
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/****************************************************************************** Terminal Input ******************************************************************************/
tkregisterfv --mov /Users/djsandoval/Desktop/Selwyn/M87127996-2016004/Baseline/PETCT/PET/PET BRAIN TOF STATIC 2/2016004A/IM-0001-0001.dcm --reg /Users/djsandoval/Desktop/Selwyn/M87127996-2016004/Baseline/PETCT/PET/PET BRAIN TOF STATIC 2/2016004A/IM-0001-0001.dcm --surfs
/****************************************************************************** Terminal Output ******************************************************************************/
set: Variable name must begin with a letter
/****************************************************************************** Terminal Output with Debug Flag On ******************************************************************************/
set echo = 1 ; breaksw breaksw
end end while ( $#argv != 0 ) while ( 5 != 0 )
set flag = $argv[1] ; shift ; set flag = --mov shift
switch ( $flag ) switch ( --mov ) if ( $#argv < 1 ) goto arg1err ; if ( 4 < 1 ) goto arg1err set movvol = $argv[1] ; shift ; set movvol = /Users/djsandoval/Desktop/Selwyn/M87127996-2016004/Baseline/PETCT/PET/PET BRAIN TOF STATIC 2/2016004A/IM-0001-0001.dcm set: Variable name must begin with a letter. shift