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Hi Kazuhisa,
I believe that I included a wrapper for FSFAST to run gPPI. Please download the toolbox and take a look. If it's not there or your having issues, please let me know and I can help troubleshoot.
Best Regards, Donald McLaren, PhD
On Sat, Apr 17, 2021 at 8:57 AM Kazuhisa Shibata kazuhisa.shibata@riken.jp wrote:
External Email - Use CautionHi the list,
I’d like to perform task-based connectivity such as generalized PPI based on results obtained by GLM at freesurfer.
However, at least freesurfer 5.1.0 does not support such function. Only resting-state connectivity analysis was allowed in freesurfer. *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1M3RMJC0RII7fUZhyR6iM2CJGX6YIMCfV2wf-ytbnCfVI9N... https://secure-web.cisco.com/1sexOeLhNkPN8Z3bn5abjthrTbMXIQ_FDPXvySkfm3Kli0i1msXrbKp2q_Rlh5xKgzSK6bV5FpqBUU4mW5IY_mYE99MHo5L_BodbE9mymJFRqaBh3M591BTR6HUDs-NYffJuGsyTtAMDGk_j0rxyGI64GdAXBC47eSXjMalNCNyt2AlpmfS9mllswhc6Wud7rr03OSKxPU8HUqCwkbzFmpq8V548K5vRVfD98eSTRgJ0GXt0N_khRifFMGADuCfRF9ESahIeuK0J7olKnCsEpUw/https%3A%2F%2Fwww.mail-archive.com%2Ffreesurfer%40nmr.mgh.harvard.edu%2Fmsg25136.html
Since then, has such function been implemented in freesurfer and fsfast? If so, is there any webpage that describes how to perform it?
If not, it seems necessary for me to transfer freesurfer surface data to CONN or other software like Generalized PPI toolbox. Does anyone have experience for this? If so, do you know any helpful documentation for it? *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1ewGXdSL6A0cqS1_xT7oOm8IkjVLmU8WY5OhyJkiUwm3Or5... https://secure-web.cisco.com/1kd5f_e9wnp_Q-jk6Fa1Nex_rQiyaV5YLCxYpT61rgTqPEhcQAqYKZbhmd-39ni-QLOgaX9SdCXf967FKyEK3wdvPUZ8xjolH8T4vGIZ_CcG5fatVs5h72VbJ7KHhY8J6AdvZIsSSD8W7HtnJe3LDZ_8w_1ZIIojhoHHvwbbNe6UltWOlSVZ501ClsjK5qRy-6WlI9zmTUEd0YHIgcwdC89NeRf2WTyb4kah5J4f3tJKdLfJvrALd_VRZ_urpLQ24LDUczSrCSrqKXLBWxkCa1w/https%3A%2F%2Fweb.conn-toolbox.org%2Fhome *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1f8gSVzTGq3pxpgbGbYUp6J4e_7l2Z8zq4ukKXcEF16t05-... https://secure-web.cisco.com/1d8170Se4bSakirggALI9YRg8jtSsFsA_EziRfhR5tvTNj6VcX5-qvRKasA34GpalZg93WZFY_KZkAzeIVA5DiU448b9czT1PRVXQNETUpTHsav7k6W2T6m1ABfdi3Dyq-NoT_rITIdZrfloAH4e4xTZK0z31oFwX1PKxoPIWtvKeTIsYqgH0gAB3fStKzdqbRNiuZNZM0YiQySBOKzdN4w1h1c5Nu6RQaFG9O4zS5YHUrVbhVmlgltYdPDk08TW8TiaaEDJcjLdRV_q43q1PcA/https%3A%2F%2Fwww.nitrc.org%2Fprojects%2Fgppi
Thank you very much for your help in advance!
Best, Kaz -- Kazuhisa Shibata
Team Leader Lab for Human Cognition and Learning Center for Brain Science RIKEN *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1gKsebD1KiB1urxW4epo--yk8QU_rBhTtD0aYA0HTNxEY8P... https://secure-web.cisco.com/1ROGmGYauHN9kDMMqdx7YcnyWqL-60MNWgMfD1P5crCo78_HgyJ3op-2dnjBd9dylKz55aXG43ubZZGbN29yPeUABqsaG1m8b6GIlM9GxJFDJB2fSvoHHeKel2-V_Rz6xzhFi2EMUSsPtZHi4jU_sg_vHwtXYHfG45Mpvsrbh2LMSz0qlI_Ol4gp4nORiHi4JilfR6keyyN4d_KiFTKY9PWcHS7uE36OA3nV49cakOReB6NoQCLsSQe-dmGNw_5K1XdYjbCMtf-8TZEI3EvUydg/https%3A%2F%2Fshibatalab.riken.jp%2F
kazuhisa.shibata@riken.jp kazuhisa.shibata@gmail.com
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