That did the trick. Thank you so much!
-Andrew
On Mon, Oct 26, 2009 at 1:57 PM, Krish Subramaniam < krish@nmr.mgh.harvard.edu> wrote:
I think the Python you have is not in the standard path /usr/bin .. you can verify it by typing
which python
It's wrong for the stats2table scripts to assume Python is in that standard path. So it's a bug. For a quick fix, you can change the first line of both files from #!/usr/bin/python to #!/usr/bin/env python
( this assumes env to be in your standard path.. and most of the time it is.. if you don't have, change that line to the path of the executable -- like #!/opt/local/bin/python )
The next release will fix this.
Thanks Krish
On Oct 26, 2009, at 1:46 PM, Andrew Jahn wrote:
Here is the output of my permissions:
[The-Ohio-State-University-Server:Angled/tmp2/AddEdge] scnlab% ls -al $FREESURFER_HOME/bin/*stats2table -rwxrwxrwx 1 root wheel 9013 Jan 21 2009 /usr/local/freesurfer/bin/aparcstats2table -rwxrwxrwx 1 root wheel 13351 Jan 21 2009 /usr/local/freesurfer/bin/asegstats2table
And here's what I get just typing in the command:
[The-Ohio-State-University-Server:Angled/tmp2/AddEdge] scnlab% asegstats2table asegstats2table: Command not found.
I am using Python 2.4.4. Does FreeSurfer require a different version?
Thanks,
-Andrew
On Mon, Oct 26, 2009 at 12:36 PM, Krish Subramaniam < krish@nmr.mgh.harvard.edu> wrote:
- Do they have proper permissions?
ls -al $FREESURFER_HOME/bin/*stats2table
-if they do.. might something be wrong with the default Python?
can you paste the entire output you get?
Krish
On Oct 26, 2009, at 12:29 PM, Andrew Jahn wrote:
Hi,
I am running FreeSurfer version 4.3, and when I type 'asegstats2table' I get a "command not found" error. I have my path set correctly (virtually all of the other commands in the freesurfer/bin directory work), but for some reason both asegstats2table and aparcstats2table do not. Any ideas?
Thanks,
-Andrew _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer