Dear all,
I ran (on an isotropic MPRAGE ):
recon-all -subject mysubject -i ./DICOM/test.25.1.2010.04.27.21.51.18.31250.14004670.IMA -autorecon-all
which ran for few hours and then exited without a successful end as can be seen on log file below.
Contents of *recon-all-status.log* are:
Wed Apr 6 12:31:55 EDT 2011 #@# MotionCor Wed Apr 6 12:33:10 EDT 2011 #@# Nu Intensity Correction Wed Apr 6 12:33:40 EDT 2011 #@# Talairach Wed Apr 6 12:35:22 EDT 2011 *#@# Talairach Failure Detection Wed Apr 6 12:36:53 EDT 2011 *#@# Intensity Normalization Wed Apr 6 12:36:53 EDT 2011 #@# Skull Stripping Wed Apr 6 12:41:44 EDT 2011 #@# EM Registration Wed Apr 6 14:16:04 EDT 2011 #@# CA Normalize Wed Apr 6 15:18:54 EDT 2011 #@# CA Reg Wed Apr 6 15:22:59 EDT 2011
The last few lines of *recon-all.log* produces:
0091: dt=0.112000, rms=0.700 (-0.001%), neg=0, invalid=766 resetting metric properties... setting smoothness coefficient to 10.00 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.638, neg=0, invalid=766 0092: dt=0.772947, rms=0.623 (2.335%), neg=0, invalid=766 0093: dt=0.028000, rms=0.622 (0.145%), neg=0, invalid=766 0094: dt=0.028000, rms=0.622 (-0.063%), neg=0, invalid=766 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.622, neg=0, invalid=766
Do you have any idea what is going wrong here?
Thanks