Bruce, I agree that ?h.white is a boundary. But it is labeled based on cortical labels? If yes, that is exactly what I need. Let me know,
Thanks for your response. Madhura
-----Original Message----- From: Bruce Fischl [mailto:fischl@nmr.mgh.harvard.edu] Sent: Wed 12/15/2010 11:05 AM To: Ingalhalikar, Madhura Cc: freesurfer@nmr.mgh.harvard.edu Subject: RE: [Freesurfer] WM parcelleted boundary
Hi Madhura,
I'm not sure I understand. The ?h.white is the boundary. If you want to create a voxel representation of it you can use mris_fill
cheers Bruce On Wed, 15 Dec 2010, Ingalhalikar, Madhura wrote:
Bruce and Allison, Thanks for your prompt reply. For me wmparc.mgz is not entirely the correct solution. I just need the labeled WM boundary (ribbon) to seed my fiber tracking. So basically I will have to compute the boundary from wmparc.mgz. Is there anything that does that already? Thanks, Madhura
-----Original Message----- From: Bruce Fischl [mailto:fischl@nmr.mgh.harvard.edu] Sent: Fri 12/10/2010 8:13 PM To: Ingalhalikar, Madhura Cc: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] WM parcelleted boundary
Hi Madhura,
have you looked at the wmparc.mgz? It might be exactly what you want
Bruce
On Fri, 10 Dec 2010, Ingalhalikar, Madhura wrote:
Hi,
Is there a way to get the cortical parcellations projected onto the WM boundary? I need to seed the boundary of the cortical ROI ( in WM) for fiber tracking. Please let me know,
Thank you, Madhura
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