you have to pass it the file(s) you want to analyze. If you have a bunch of dicoms, and your T1 is just one of many, you have to figure out one of the files that corresponds to the T1. Or you can use dcmunpack, eg, dcmunpack -src /path/to/your/dicoms -targ outputfolder -auto-runseq mgz That command will find all the series and convert each one to an mgz file. Hopefully, it will be obvious after that which one is the T1
On 8/22/2024 10:48 PM, 김유진 wrote:
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Hello,
I have many dicom files with many MRI sequences from one person.
(T1, T2, FLAIR, DWI, ...)
I didn't divided the folders according to the sequences-they are all in one folder.
Then does the program sort T1 image automatically and make results when I do 'recon-all -all -i <one file> -s <subject name>'?
Or does the program use all the files?
And I wonder that Freesurfer offers code for sorting the files based on sequences.
Thank you in advance!
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