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Hi there,
Not exactly sure if you'll be able to help but I am a bit stumped. I recently updated my MAC os to the new monterey update. I now get these error messages when trying to use Freesurfer, or even freeview:
viewfreesurfer PATH/MRI/Freesurfer
2022-02-04 09:50:46.970 Freeview[476:2201959] *** WARNING: Method userSpaceScaleFactor in class NSView is deprecated on 10.7 and later. It should not be used in new applications. Use convertRectToBacking: instead.
[unset]: aborting job:
application called MPI_Abort(MPI_COMM_WORLD, 59) - process 0
viewfreesurfer:4: command not found: [0]PETSC
[\w]$ freeview
2022-02-04 09:51:20.263 Freeview[777:2204165] *** WARNING: Method userSpaceScaleFactor in class NSView is deprecated on 10.7 and later. It should not be used in new applications. Use convertRectToBacking: instead.
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range
[0]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger
[0]PETSC ERROR: or see http://secure-web.cisco.com/1EG_EG7NKVy2YlczWKlaltWyiZxVvICvRft1yFkkckKjOYb7... ERROR: or try http://secure-web.cisco.com/1GqQtB0MZCxTV0bZHhEXv3QNy3VG7-5YvXgfSDW1Lq0ByRHf... on linux or man libgmalloc on Apple to find memory corruption errors
[0]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run
[0]PETSC ERROR: to get more information on the crash.
[0]PETSC ERROR: --------------------- Error Message ------------------------------------
[0]PETSC ERROR: Signal received!
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: Petsc Release Version 2.3.3, Patch 13, Thu May 15 17:29:26 CDT 2008 HG revision: 4466c6289a0922df26e20626fd4a0b4dd03c8124
[0]PETSC ERROR: See docs/changes/index.html for recent updates.
[0]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
[0]PETSC ERROR: See docs/index.html for manual pages.
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: Unknown Name on a darwin12. named Taylor-Desktop.local by taylorl Fri Feb 4 09:51:18 2022
[0]PETSC ERROR: Libraries linked from /usr/pubsw/packages/petsc/2.3.3-p13-64b/src/petsc-2.3.3-p13/lib/darwin12.2.0-c-opt
[0]PETSC ERROR: Configure run at Mon Dec 17 15:29:35 2012
[0]PETSC ERROR: Configure options --with-debugging=no --with-cc=gcc --with-fc=0 --download-f-blas-lapack=0 --download-mpich=1 --with-mpi=1 --with-x=0 --with-gnu-copyright-code=0 --with-shared=0 COPTFLAGS=-O3 CXXOPTFLAGS=-O3 FOPTFLAGS=-O3
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: User provided function() line 0 in unknown directory unknown file
[unset]: aborting job:
application called MPI_Abort(MPI_COMM_WORLD, 59) - process 0
I am not exactly tech savvy to understand how I can go about this to remedy it. Any advice?
Thank you so much.
Lisa
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