Hello everyone,
I have recently upgraded my OS from RedHat Linux 9 to RedHat Enterprise edition. After that, I'm getting the following error when I run : $ recon-all -sid xxxx -stage1
####################################### INFO: SUBJECTS_DIR is /home/edamaraju/freesurfer/subjects --------------------------------------------- MotionCor Tue Dec 21 18:22:55 EST 2004
INFO: no runs were found in /home/edamaraju/freesurfer/subjects/eFMRI02/mri/orig/XXX, however, there is a volume in /home/edamaraju/freesurfer/subjects/eFMRI02/mri/orig, so I am just going to proceed with that as the input. --------------------------------------------- Talairach Tue Dec 21 18:22:57 EST 2004 /home/edamaraju/freesurfer/subjects/eFMRI02/mri talairach2 eFMRI02 INFO: registering eFMRI02 Tue Dec 21 18:22:57 EST 2004 -------------------------------------------- mri_convert orig orig/orig.mnc mri_convert orig orig/orig.mnc reading from orig... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) writing to orig/orig.mnc... -------------------------------------------- mritotal -verbose -debug -clobber -protocol icbm orig/orig.mnc transforms/talairach.xfm -------------------------------------------- mri_add_xform_to_header /home/edamaraju/freesurfer/subjects/eFMRI02/mri/transforms/talairach.xfm /home/edamaraju/freesurfer/subjects/eFMRI02/mri/orig /home/edamaraju/freesurfer/subjects/eFMRI02/mri/orig Tue Dec 21 18:24:00 EST 2004 --------------------------------------------- Nu Intensity Correction Tue Dec 21 18:24:00 EST 2004 mri_convert orig nu/nu0.mnc mri_convert orig nu/nu0.mnc reading from orig... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) writing to nu/nu0.mnc... nu_correct -clobber nu/nu0.mnc nu/nu1.mnc [edamaraju@brisbane.psych.brown.edu:/home/edamaraju/freesurfer/subjects/eFMRI02/mri/] [2004-12-21 18:24:09] running: /usr/pubsw04/packages04/mni/current/bin/nu_estimate_np_and_em -parzen -log -sharpen 0.15 0.01 -iterations 50 -stop 0.001 -shrink 4 -auto_mask -nonotify -b_spline 1 -distance 200 -quiet -execute -clobber -nokeeptmp -tmpdir /usr/tmp/nu_correct_13858/ nu/nu0.mnc nu/nu1.imp
/usr/pubsw04/packages04/mni/current/bin/volume_stats: error while loading shared libraries: libstdc++-libc6.1-1.so.2: cannot open shared object file: No such file or directory nu_estimate_np_and_em: crashed while running volume_stats (termination status=32512) nu_correct: crashed while running nu_estimate_np_and_em (termination status=32512) ERROR: nu_correct --------------------------------------------------------------------------------
Where do I find these shared libraries? How should I link them?
Any help is appreciated.
Thanks, Eswar.