sorry, I still don't understand. Are you really trying to generate a subcortical atlas? Or do you mean a subcortical segmentation? If the latter, then 1mm is fine. The resolution you want really depends on what you are trying to do
On Tue, 24 Jan 2017, Alex Cohen wrote:
generating the subcortical atlas: recon-all now produces aseg.mgz (subcortical atlas) with Hi-Res data (<1mm). The -hires flag is still necessary to include with recon-all when hi-res data is input. Changes to mri_normalize, mri_em_register and mri_watershed were made to support this feature.
Alexander Li Cohen, M.D., Ph.D. E-mail: Alexander.Cohen2@childrens.harvard.edu (Medical/Science Email) E-mail: alexcohen@gmail.com (Lifetime Email)
On Tue, Jan 24, 2017 at 12:21 PM, Bruce Fischl fischl@nmr.mgh.harvard.edu wrote: Hi Alex
cut it for what? Bruce On Tue, 24 Jan 2017, Alex Cohen wrote: So what resolution would make sense to use? the release notes say <1.0mm but would 0.9mm isovol really cut it? -Alex ---------------------------------------------------------------- Alexander Li Cohen, M.D., Ph.D. E-mail: Alexander.Cohen2@childrens.harvard.edu (Medical/Science Email) E-mail: alexcohen@gmail.com (Lifetime Email) ----------------------------------------------------------------The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.