Hi again,
When I convert a surface to .gii with mris_convert, it is shifted compared to the original surface when loaded into freeview (see previous mail). Does anyone know how to solve this?
Best, Karen
On 02/18/2014 10:01 AM, Karen Marie Sandø Ambrosen wrote:
Hi Freesurfer experts,
I am trying to run tracktography from freesurfer labels using probtrackx2 in fsl. To convert the labels to surfaces I use the label2surf command as recommended on the fslwiki. To use the label2surf command I need to convert the surface, e.g. lh.white into a fsl-compatible format using mris_convert:
mris_convert lh.white lh.white.gii
When I load lh.white and the created lh.white.gii into freeview the two are not aligned. Aren't they suppose to be similar when lh.white.gii is use in the label2surf command? Do I need additional arguments in the mris_convert command?
Best, Karen _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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