sure. If you have a T2 you can probably just use FSL though.
cheers, Bruce
On Wed, 3 Dec 2008, Anthony wrote:
Hi Bruce,
Thank you for your prompt reply ,guess I can only deal with GM an WM with freesurfer for now. I read somewhere in our archive that you were considering other approaches to compute sulcal CSF like using T2-images , will it be available for distribution ?
Thanks, Anthony
--- On Wed, 3/12/08, Bruce Fischl fischl@nmr.mgh.harvard.edu wrote: From: Bruce Fischl fischl@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] CSF calculation To: "Anthony" slam_ono@yahoo.com Cc: freesurfer@nmr.mgh.harvard.edu Date: Wednesday, 3 December, 2008, 9:18 AM
Hi Anthony,
we compute ventricular CSF but not sulcal CSF (which you can't really see in a T1-weighted image).
cheers, Bruce On Tue, 2 Dec 2008, Anthony wrote:
Dear all,
Is there anyway to calculate CSF volume using freesurfer? I only know
freesurfer supports GM and WM calculation based on aseg.mgz and aseg.stats .
Thanks, Anthony
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