I can't make anything out of the error msg gif. Somewhere in there, there should be a mris_preproc command line. Can you try cutting and pasting that into a shell? Trying to do this in the context of qdec will be difficult doug
On 07/25/2014 05:09 AM, Isotalus, Hanna wrote:
Dear FreeSurfer gurus,
I am using QDEC to run my analyses on a large data set. The analysis works fine with up to 1224 subjects but as soon as I add subject 1225 I get an error and the analysis stops. The error displays during 'concatenating volumes' and it just displays file names. When I try to run the analysis on the remaining subjects (around 360 of them) the analysis runs fine – so I am inclined to think there's nothing wrong with the data files. I've tried rotating the order of subjects and it just doesn't seem to allow me to run the analysis on all of them. Do you have any suggestions?
Here's a link to a screenshot of the error I get:
https://www.dropbox.com/s/08pqnmgep6crmr5/error%20message.gif
I can't actually see all of the error message, here's it from the beginning of what I can see and it continues like that – displaying all file names I think.
Thank you and best wishes,
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