We'll have to figure out where those 229s are coming from. Try this mri_binarize --i aseg.presurf.mgz --match 229 --o bin229.mgz It should print out whether there were any voxels that matched. If so, you can load bin229.mgz with the norm.mgz and the aseg.presurf.mgz and see where they are. If there are not any, then do the same thing with aparc+aseg.mgz
On 10/7/2019 4:54 PM, Marina Fernández wrote:
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Dear Douglas,
Sorry! This is the previous information:
Dear Douglas,
Thank you for the replay.
I think so, I can't find the code 229 in any subject.
I can't see anything strange in the aparc+aseg.mgz. The cerebral voxels have the normal > > segmentation and labels. Could it be a problem with the extracerebral voxels?
Best regards, Marina.
That is kind of weird. It says it has found a segmentation with number 229, but we don't have that code in our system. Can you find the 229 voxels in the aparc+aseg.mgz?
Dear experts,
The following error occurs with one subject when I am running gtmseg command:
Computing colortable ERROR: cannot find match for subcortical segid 229 ERROR: mri_gtmseg -s qsm_04_year3 --usf 2 --o gtmseg.mgz --apas apas+head.mgz --no-subseg-wm --no-keep-cc --no-keep-hypo gtmseg existed with errors ans=1
Do you know what happened with this subject? What can I do to solve it?
Thank you very much in advance. Marina.