External Email - Use Caution
I tried. I cannot open them. They are not .mgz files, they are binary files. I will try though, and see what is happening.
Thank you, Rosalia
El lun., 22 oct. 2018 21:49, Bruce Fischl fischl@nmr.mgh.harvard.edu escribió:
with freeview On Mon, 22 Oct 2018, Rosalia Dacosta Aguayo wrote:
External Email - Use CautionHi Bruce,
I cannot examine those files with gedit. Could you tell me how to open
them?
Thank you, Rosalia
On Mon, Oct 22, 2018 at 9:35 PM Bruce Fischl fischl@nmr.mgh.harvard.edu
wrote:
Hi Lisa no, likely you have to identify and correct the source of thegiant defect,
typically be either fixing the skull stripping, or editing thewm.mgz or
adding control points cheers Bruce On Mon, 22 Oct 2018, Lisa Crystal Krishnamurthy wrote: > External Email - Use Caution > > Hi all, > > I have a stroke brain with a large lesion that runs into thissame problem. Is there a
way to push the process along? No white matter segmentations arecreated to try and edit
the surface. > > Best, > -Lisa Krishnamurthy > > -----Original Message----- > From: freesurfer-bounces@nmr.mgh.harvard.edu [mailto:freesurfer-bounces@nmr.mgh.harvard.edu] On Behalf OfBruce Fischl
> Sent: Monday, October 22, 2018 3:30 PM > To: Freesurfer support list > Subject: Re: [Freesurfer] Stuck in "CORRECTING DEFECT" > > Hi Rosaila > > usually when you have a defect that large (>30,000) vertices,which is about 1/4 of
the total surface more or less, something is dramatically wrongand it is not worth
waiting for it to finish (it might take days or weeks). Examinethe ?h.orig.nofix and
?h.inflated.nofix surfaces and see if there is some big problemlike skull or cerebellum
attached to the surface. > > cheers > Bruce > > > On Mon, 22 Oct 2018, Rosalia Dacosta Aguayo wrote: > >> >> External Email - Use Caution >> >> Dear FreeSurfer team, >> >> I Have run -autorecon1 in my sample and the report.log was"finished without errors"
>> Now, running recon-all -all I have seen that a participant isstuck in
>> CORRECTING DEFECT 0 (vertices=31977, convex hull=5359, v0=0)for more
>> than an hour. I wonder if this is normal or if I should beworried
>> because recon-all takes 4.5 hours approximately for everyparticipant but for this
one, it seems that is not moving from this step. >> >> Anyone could help me with this? >> >> Best regards, >> Rosaila >> >> >> >> > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > >_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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