Hi Dan,
if you have a good talairach.xfm it is used for this purpose.
cheers, Bruce
On Mon, 18 Oct 2004, Daniel Wehner wrote:
Hi, Is there a good way to ensure that the cutting planes are accurate for segmenting the white matter? In some subjects, it appears that their head was tilted in the scanner, so some slices contain both RH and LH white matter. Because of this, the cerebellum sometimes gets connected during mri_fill and inflate_subject exits before the brain can be inflated.
Here is the last few output lines when it exits:
badRH = 23027/273213, badLH=41/234276 Please check filled volume. Cerebellum may be included.
Thanks, Dan _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer