Re: [Freesurfer] mris_volmask ERROR

-- On Tue, 8 Dec 2009, Guang Zeng wrote: > > Hi, there, > > I submit several subjects to FS piepline using our Sun Grid Engine System, all of them failed at the same place which is > the mris_volmask step in autorecon3. It gave me an error like: > > ERROR: In /usr/pubsw/packages/vtk/5.2.0/src/Common/vtkMultiThreader.cxx, line 372 > vtkMultiThreader (0x33d05a90): Unable to create a thread. pthread_create() returned 12 > > I > knew this error is caused by some VTK function FS used to allocate > memory. So what I did is I use recon-all -s subjectid , and the process will finish. > > What happen is the same subjects have been run on our local machines, and finished without any problems. > However, when I looked at the wmparc.stats file of the same subject, the results are quite different. > > For example, > ctx_isthumus cingluate and ctx_posterior singulate value are not zeros for my local machine results, while > ctx_isthumus cingluate and ctx_posterior singulate value are zeros for my SGE machine results. > > And this problem have to all these subjects. Another funny thing is if I look at the ?h.aparc.stats file, the results from SGE and local machine are the same, while > when I load the results to tksurfer, they are quite different. > > So my question is: > > Since I need use SGE to run multiple subjects again, next time when I met this mris_volmask ERROR, I need rerun the process from the beginning, not from autorecon3, right? > > Thank! > Guang > > _________________________________________________________________ > Chat with Messenger straight from your Hotmail inbox. > http://www.microsoft.com/windows/windowslive/hotmail_bl1/hotmail_bl1.aspx?oc...