I think there is no option to set custom color code for overlay from command-line. I’ll add that option and let you know when it’s ready.
Best, Ruopeng
On Nov 1, 2018, at 4:51 PM, Nillo, Ryan Michael R RyanMichael.Nillo@ucsf.edu wrote:
External Email - Use CautionHi Freesurfer Users,
I used linear regression to map regional beta values on the fsaverage surface. I want to use a colormap that goes from blue to gray or gray to red (no cyan and yellow). I've been using a custom colormap shown in example.tiff. I've been making this by going into freeview and adjusting the parameters from the GUI. Is there a way to load this and create a snapshot from the command line? I know you can adjust certain parameters like overlay threshold and change the colormap, but I don't see an option for "custom". The end goal is to make multiple regression models and automate the screenshot process.
Best,
Ryan M Nillo Staff Research Associate I UCSF Department of Radiology and Biomedical Imaging <example.tiff>_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu mailto:Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer