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Hi guys,
I have the same problem as Saum, I executed the recon-all in several subjects and I did not obtain a completely correct segmentation of the pial surface. To solve this error could I use the control points? When I use the control points, will I also be able to correct the white matter segmentation?
I send you a image if you want to check it.
Thank you very much!
Cheers,
2018-04-27 21:28 GMT+02:00 Bruce Fischl fischl@nmr.mgh.harvard.edu:
Hi Saum
it is, but you need to figure out why it isn't getting out far enough. The easiest way is to override the intensity statistics that are computed automatically in mris_make_surfaces. You can see them if you look in your recon-all.log. For example if the lowest value gm is allowed to be at the pial surface is too high, then it will settle too far in
cheers Bruce
On Fri, 27 Apr 2018, Saum Naderi wrote:
External Email - Use CautionHi guys,
I'm having some trouble extending the pial surface of my bm volume. I am aware that the general procedure for extending the pial is to extend the wm first and the pial will follow. However, is it possible to extend the pial surface without affecting the wm boundary?
Thanks,
Saum
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