Hello FS Group, I get "segmentation fault" error during autorecon2 step. I checked the talairach transformation. It seemed to be fine. The skull strip did not seem to be correct. I manually edited the brainmask.mgz and saved the data. But still I get the error. I am not sure what the problem is. Any help would be great!
I have the output form mri_info for the original surface. .
Thanks. Mithra.
Output for mri_info: mri_info $SUBJECTS_DIR/asm1_004/mri/orig.mgz Volume information for /usr/pubsw/freesurfer/subjects/asm1_004/mri/orig.mgz type: MGH dimensions: 301 x 301 x 301 voxel sizes: 1.0000, 1.0000, 1.0000 type: UCHAR (0) fov: 301.000 xstart: -150.5, xend: 150.5 ystart: -150.5, yend: 150.5 zstart: -150.5, zend: 150.5 TR: 4.97 msec, TE: 1.21 msec, TI: 500.00 msec, flip angle: 11.00 deg rees nframes: 1 ras xform present xform info: x_r = -1.0000, y_r = 0.0000, z_r = 0.0000, c_r = 0.0000 : x_a = 0.0000, y_a = 0.0000, z_a = 1.0000, c_a = 40.3653 : x_s = 0.0000, y_s = -1.0000, z_s = 0.0000, c_s = -26.5037
talairach xfm : /usr/pubsw/freesurfer/subjects/asm1_004/mri/transforms/talairach .xfm Orientation : LIA Primary Slice Direction: coronal
voxel to ras transform: -1.0000 0.0000 0.0000 150.5000 0.0000 0.0000 1.0000 -110.1347 0.0000 -1.0000 0.0000 123.9963 0.0000 0.0000 0.0000 1.0000
voxel-to-ras determinant -1
ras to voxel transform: -1.0000 -0.0000 -0.0000 150.5000 -0.0000 -0.0000 -1.0000 123.9963 0.0000 1.0000 0.0000 110.1347 0.0000 0.0000 0.0000 1.0000