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Hi Andrew We are running Ubuntu 19.10 on our computer and as for Freesurfer were we tried to run this on freesurfer 7 and the development version but both produced this error. (freesurfer 7: freesurfer-linux-centos7_ x86_64-7.1.0-20200511-813297 Freesurfer DEV: freesurfer-linux-centos8_ x86_64-dev-20201109-2e16dca)
-Mackenzie
On Wed, Feb 3, 2021 at 10:37 AM Hoopes, Andrew AHOOPES@mgh.harvard.edu wrote:
Hi Mackenzie,
Can you let us know what OS and version you’re running this on?
Thanks,
Andrew
*From: *freesurfer-bounces@nmr.mgh.harvard.edu < freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of Langan, Mackenzie < mackenzie.langan@icahn.mssm.edu> *Date: *Wednesday, February 3, 2021 at 10:31 AM *To: *freesurfer@nmr.mgh.harvard.edu freesurfer@nmr.mgh.harvard.edu *Subject: *[Freesurfer] Issue with the hypothalamic segmentation
External Email - Use Caution *Good Morning,
I have been trying to run the hypothalamic segmentation and get the following error:
*aalqadi@athena:/zstore/data/aalqadi/aalqadi/mPFC/data$ mri_segment_hypothalamic_subunits --s S05486*
*Traceback (most recent call last):*
- File
"/usr/local/freesurfer_dev/freesurfer/python/scripts/mri_segment_hypothalamic_subunits", line 10, in <module>*
import freesurfer as fs*
File
"/usr/local/freesurfer_dev/freesurfer/python/packages/freesurfer/__init__.py", line 8, in <module>*
- from . import bindings*
*ImportError: /lib/x86_64-linux-gnu/libcrypt.so.1: version `XCRYPT_2.0' not found (required by /usr/local/freesurfer_dev/freesurfer/python/packages/freesurfer/* *bindings.cpython-36m-x86_64-linux-gnu.so* http://secure-web.cisco.com/1hzKok6ieorAQWILbwXrHm4nWv5aGVWrgLXUjICNL0HcYQDptT0fNHU6AOnJE3qXzhl9NRtNMMllRlwPcgtVISVPA9DsJir2pbwpc4pB0rKgOo_wc0yoGtFyiaXPXPRResPg1pGzrgr4u8Ao1pz7izacK37z0ZG3aoldmpUuq7kUqK3wyc40aHRkJp7A41zrUm-ikFytp9N0shHTbuPDQfnmsIvxVlN5ohXYytZXde24kCCukWp5zEZbAtWoVD6A8g0X2TtrYVzai92-jQmruSg/http%3A%2F%2Fbindings.cpython-36m-x86_64-linux-gnu.so%2F *)*
We installed the development version of freesurfer to see if that would work to run this, but that didn't work. We then installed XCRYPT_2.0 but still got the same error. We have two versions of python on our machine which we amended to fix the problem, but still get the same error. I am at a loss as to what I should try next to implement this. Any help would be great. Thanks
Best,
Mackenzie _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://secure-web.cisco.com/19hlZ_7axUn8AdTxkDXxN0gm31q3caM72TmC2x6KVSreK-I...