The name is arbitrary. You can specify it on the aparcstats2table command line doug
On 08/15/2013 12:10 PM, _andreia_@sapo.pt wrote:
Hi Doug,
It created an indidual .txt file, however I think I need a .stats file so to extract all the values from all subjects in a table using aparcstats2table.
Or can I do that from several .txt?
Thank you! Andreia
Quoting Douglas N Greve greve@nmr.mgh.harvard.edu:
If mris_anatomical_stats created the correct values, what's the problem? doug
On 08/15/2013 10:05 AM, _andreia_@sapo.pt wrote:
With mris_anatomical_stats using -log a .txt was created with the correct values. I'm trying mri_segstats now but I'm not getting the .stats file...
Waiting for Nick or Doug advice now.
Thank you Bruce!
Andreia
Quoting Bruce Fischl fischl@nmr.mgh.harvard.edu:
oh, I see. mris_anatomical_stats can write to a file with -log <file name>, but Doug or Nick can probably point you at a better way to do it with mri_segstats.
cheers Bruce On Thu, 15 Aug 2013, _andreia_@sapo.pt wrote:
Hi Bruce,
The values are displayed in the terminal but how can I create a .stats file with those measures to get a table with aparcstats2table?
I did manage do create such file from ?h.cortex.label but the values do not match the ones in aparc.
Andreia
Quoting Bruce Fischl fischl@nmr.mgh.harvard.edu:
Hi Andreia
mris_anatomical_stats -l <path to ?h.cortex.label> should do the trick.
cheers Bruce On Thu, 15 Aug 2013, _andreia_@sapo.pt wrote:
> How can I get the thickness and surface area values per hemisphere? > > Should I use the ones from cortex.label or the ones in aparc? How can > I get the aparc ones? > > Thank you in advance! > > Andreia > > > Quoting _andreia_@sapo.pt: > >> Sorry, the measures are only thickness and surface area, since I can >> get the volumes from aseg. >> >> Andreia >> >> >> Quoting _andreia_@sapo.pt: >> >>> Dear list, >>> >>> To obtain the thickness, surface area and volume values for each >>> hemisphere I ran the command line in the subjdir: >>> >>> mris_anatomical_stats -mgz -f ../stats/lh.cortex_white.stats >>> subjid lh white >>> >>> And did that with the pial surface too. However, the values I get from >>> the generated cortex.stats do not match the ones in aparc.stats >>> >>> How can I get the referred measures, which are in the aparc.stats but >>> do not appear in the table when using aparcstats2table? >>> >>> Thank you! >>> >>> Andreia >>> >>> _______________________________________________ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>> >>> >>> The information in this e-mail is intended only for the person >>> to whom it is >>> addressed. If you believe this e-mail was sent to you in error and >>> the e-mail >>> contains patient information, please contact the Partners Compliance >>> HelpLine at >>> http://www.partners.org/complianceline . If the e-mail was sent to >>> you in error >>> but does not contain patient information, please contact the sender >>> and properly >>> dispose of the e-mail. >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > >
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