Dear Freesurfer experts,
I am having trouble using the -localGI option to smoothen the pial surface. When I use the command like:
recon-all -s ABC -localGI
I got the following error:
INFO: FreeSurfer build stamps do not match
Subject Stamp: freesurfer-Darwin-lion-stable-pub-v5.3.0
Current Stamp: freesurfer-Darwin-OSX-dev-20160611-876a0e6
cp: /Applications/freesurfer/subjects/ABC/scripts/lastcall.build-stamp.txt: Permission denied
INFO: SUBJECTS_DIR is /Applications/freesurfer/subjects
Actual FREESURFER_HOME /Applications/freesurfer
/Applications/freesurfer/subjects/ABC/scripts/recon-all.cmd: Permission denied.
But when I tried to do the same reconstruction via the super user(su), it says something about the library linking like below. I am wondering if it is a problem related to Matlab or freesurfer? I am currently using the development version of freesurfer.
Any help will be greatly appreciated.
reading surface from lh.pial...
dyld: lazy symbol binding failed: Symbol not found: ___emutls_get_address
Referenced from: /Applications/freesurfer/bin/../lib/gcc/lib/libgomp.1.dylib
Expected in: /usr/lib/libSystem.B.dylib
Thank you all.
Hari