Sure, upload it and one of us will take a look
Bruce
On Aug 15, 2014, at 10:28 me PM, Mehul Sampat kmpsampat@gmail.com wrote:
Hi Bruce, rh.aparc.stats looks good and also rh.aparc.a2009s.stats looks correct. However, both aparc+aseg.mgz and aparc.a2009s+aseg.mgz have the issue with missing parcellation labels in right hemisphere.
Also I suspect the issues starts occurring in rh.ribbon.mgz and ribbon.mgz (missing labels). (lh.ribbon.mgz is fine)
I tried to recreate the rh.ribbon.mgz and ribbon.mgz files using the command below and I am able to reproduce the issue. mris_volmask --label_left_white 2 --label_left_ribbon 3 --label_right_white 41 --label_right_ribbon 42 --save_ribbon --save_distance <subjid>
I can upload the data if you would like to take a look. Thanks Mehul
On Fri, Aug 15, 2014 at 1:54 AM, Bruce Fischl fischl@nmr.mgh.harvard.edu wrote: How does the rh.aparc look?
On Aug 14, 2014, at 8:13 PM, Mehul Sampat mpsampat@gmail.com wrote:
Hi Folks, We have a strange error for one case. For one case there are missing cortical parcellation labels in aparc+aseg.mgz file in the right hemisphere (see screenshots)
I looked at the recon-all.log file and no errors are reported. Also I recreated aparc+aseg.mgz file using the following command but the issue persists: mri_aparc2aseg --s subjid --volmask I looked at the rh.white and rh.pial and those look good. I cannot figure out what would cause such an issue ? I was wondering if anyone has seen something similar ? Thanks Mehul
<missing-parcellation-10591037.png> <s3061-s10591037-img3.png> <s3061-s10591037-img2.png>
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