External Email - Use Caution
Hi all, Just following up on this as I've run into the exact same problem. Is there a different recon-all.makefile that should be used for FS 6/6.0.1 ?
Thanks!
On Fri, Mar 29, 2019 at 9:28 AM Matthieu VANHOUTTE < matthieuvanhoutte@gmail.com> wrote:
External Email - Use CautionDear Freesurfer's experts,
Havng done multiple types of manual editing in two subjects, I relaunched the recon-all process (Freesurfer 6.0.1) with the flag "-make all".
However, during the process, I goth for both subjects the following error message:
*make: *** [/netapp/vol2_agewell/pro/IMAP/imap_mvh/FS6.0.1/awellv1s097/mri/aseg.presurf.mgz] Error 1*
*recon-all -s /netapp/vol2_agewell/pro/IMAP/imap_mvh/FS6.0.1/awellv3s024 -ccseg ERROR: Flag -ccseg unrecognized.*
Following the troubleshooting site ( https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/TroubleshootingDataV6.0) I have over-writed the "recon-all.makefile" file since I use the 6.0.1 version of Freesurfer.
Thanks for helping.
Best,
Matthieu _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer