Re: [Freesurfer] aparc+aseg OR wmparc

yes On 06/26/2014 04:49 PM, Alshikho, Mohamad J. wrote:

Hi Fs Experts,

I am working on FA ROI analysis for my subjects, I did the following:

1.Mri_vol2vol –mov fa.nii –reg register.dat –fstarg –interp nearest –o fa.anat.mgh

2.Mri_segstat wmparc.mgz --ctab $FREESURFER_HOME/FreeSurferColorLUT.txt –I fa.anat.mgh –sum fa.stats

Then I used less fa.stats in order to view the statistics results… my question here is:

can I use aparc+aseg.mgz instead of wmparc.mgz in my command line in step 2 in order to exclude the unsegmentedwhite matter in the output stats.

Thanks,

Mohamad

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