Hi Doug I am using the 5.0, but I have followed the instructions and downloaded the new files as indicated.
the xhemi folder has some folders that are empty (bem, label, src, stats, tmp), while the others include files (mri, scripts, surf, touch)
Is it possible that the script fails to copy files in the xhemi/label directory? I noted that the script copies other files from the subj00X folders to the xhemi folders, but label files are not copied.
May I find the label files in other folders and manually copy them into the xhemi/label folder? which are the correct files?
Thank you for your help!
Angela
I'm not sure why this is failing. Are there other things in the xhemi folder? What version of FS are you using? doug
On 07/01/2014 11:06 AM, angela.favaro@unipd.it wrote:
sure! thank you
Can you send the log file (or the full terminal output)? On 06/30/2014 03:11 PM, angela.favaro@unipd.it wrote:
Hi all, I have a problem with 'Surface-based Interhemispheric Registration'
I followed the instructions and all seem to work, but the command: 'surfreg --s $subject --t fsaverage_sym --lh --xhemi'
finish with the error below (indeed in the xhemi/label directory, there is no file)
What can I do? Thank you for any help! Angela
#@# Cortical Parc rh Mon Jun 30 17:44:52 CEST 2014 /Users/angelafavaro/Desktop/risonanze/studyfree/subj024/xhemi/scripts \n mris_ca_label -l ../label/rh.cortex.label -aseg ../mri/aseg.mgz -seed 1234 subj024/xhemi rh ../surf/rh.sphere.reg /Applications/freesurfer/average/rh.curvature.buckner40.filled.desikan_killiany.2010-03-25.gcs ../label/rh.aparc.annot \n No such file or directory mris_ca_label: could not open label file ../label/rh.cortex.label No such file or directory
No such file or directory Darwin host-001.homenet.telecomitalia.it 10.8.0 Darwin Kernel Version 10.8.0: Tue Jun 7 16:33:36 PDT 2011; root:xnu-1504.15.3~1/RELEASE_I386 i386
recon-all -s subj024/xhemi exited with ERRORS at Mon Jun 30 17:44:52 CEST 2014
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Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
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