With the most recent release, does the skullstripping take place with brainmask.auto.mgz and brainmask.mgz? After completing recon-all autorecon-all I checked brain.mgz. I had some frontal areas missing, so ran recon-all -skullstrip -wsthresh 30. Brainmask.mgz looks good.
I believe that I know the answer, but to be safe, after running autorecon2 brain.mgz will reflect these edits? Thanks, Cliff
------------------ Clifford Smith, PhD Assistant Professor of Behavioral Sciences Rush University Medical Center 312.942.2893