I don't think recon-all uses any sym links. I can mod the average subj script to copy instead of link.
bdragans@uke.uni-hamburg.de wrote:
Hi Doug,
while trying to expand the volume of my virtual machine to be able to create symbolic links I started wondering if the way I preprocessed my data with recon_all might be affected somehow by the fact symbolic links were not supported (the data was located on a mounted drive). The only error message regarding this came during the make_average_subject part...
Is there any way to use freesurfer avoiding the creation of symbolic links?
many thanks bogdan
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