Dear Steve, Can you please send us: - The segmentation command you used for a sample subject - A list of the files under the mri directory for that subject. Cheers, /Eugenio
Juan Eugenio Iglesias Senior research fellow CMIC (UCL), MGH (HMS) and CSAIL (MIT) http://www.jeiglesias.com
From: freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Steve Petersen marfneuro@gmail.com Reply-To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Date: Wednesday, 11 December 2019 at 03:54 To: "freesurfer@nmr.mgh.harvard.edu" freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] Hippocampal subfields: exporting results
External Email - Use Caution Dear Freesurfer experts,
I used the freesurfer dev version to estimate hippocampal subfields using mode B (additional scan).
All have worked fine although when I tried to export the results I can not find the txt file created
This is the output
rmnlab1:~ neucoga$ quantifyHippocampalSubfields.sh HIPOAMYG HipoAmyg_results.txt /Applications/freesurfer/subjects/4001T1
Gathering results from subjects in:
/Applications/freesurfer/subjects/4001T1
Using the suffix name:
HIPOAMYG
And writing them to:
HipoAmyg_results.txt
Where is saved the HipoAmyg_results.txt file?? I have searched it and I can't find it...
Excuse me for this basic question.
Thanks in advance.
Best regards,