I do note that I can enter "freeview ./brain.mgz" and the image opens. Then I can manuall save it as a .nii
- Joshua Lee, Ph.D. Post-Doctoral Researcher MIND Institute University of California, Davis 530.747.3805
On Thu, Jun 2, 2016 at 12:33 PM, Joshua Lee jkilee@ucdavis.edu wrote:
I had replaced the user name in the output I posted to the listserv for security reasons. I am not on a virtual machine. Fresh install on bare metal. ls -l ../
...
drwxr-xr-x 13 myuser myuser 4096 Jun 2 11:50 mri ...
Joshua Lee, Ph.D. Post-Doctoral Researcher MIND Institute University of California, Davis 530.747.3805
On Thu, Jun 2, 2016 at 12:25 PM, dgw dgwakeman@gmail.com wrote:
Is this a virtual machine? (The username seems odd...)
What is the output of whoami?
What is the output of ls -l ../?
hth d
On Thu, Jun 2, 2016 at 3:19 PM, Joshua Lee jkilee@ucdavis.edu wrote:
Hi Doug,
Yes the quoted lines were output fromt her terminal.
ls -l brain.mgz -rwxrwx--- 1 myuser myuser 1216430 May 18 17:06 brain.mgz
I have many Tb of disk space. I can chmod 777 the files and still seg faults.
Thanks Josh
Joshua Lee, Ph.D. Post-Doctoral Researcher MIND Institute University of California, Davis 530.747.3805
On Thu, Jun 2, 2016 at 12:13 PM, Douglas N Greve <
greve@nmr.mgh.harvard.edu>
wrote:
Can you send the full terminal output? Or is that it? Do you have
enough
disc space or is it running out? what is the result of ls -l brain.mgz
On 06/02/2016 03:07 PM, Joshua Lee wrote:
On freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0 installed on Ubuntu 16.04 LTS mri_convert is seg faulting
>>ls brain* brain.finalsurfs.mgz brainmask.auto.mgz brainmask.mgz brain.mgz mri_convert ./brain.mgz --in_type mgz --out_type nii -o./brain.nii
$Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ reading from ./brain.mgz... Segmentation fault (core dumped)Any ideas?
Thanks
Joshua
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