Re: [Freesurfer] Histogram analysis capability via mri_segstats or other command-lines in Freesurfer?

No, sorry. You can do it easily enough in matlab, eg

seg = MRIread('seg.mgz');

input = MRIread('input.mgz');

ind = find(seg.vol == SegNo);

segmode = mode(input.vol(ind));

[h x] = hist(input.vol(ind),100);

On 03/13/2018 07:58 PM, Yash Patel wrote:

Any updates or ideas in extracting histogram data from mri_segstats?

On Sun, Mar 11, 2018 at 1:16 PM Yash Patel <ypatel@research.baycrest.org mailto:ypatel@research.baycrest.org> wrote:

Dear all,

I am using mri_segstats to obtain intensity values from each of
the 34 cortical parcellations in the Desikan-Killiany Atlas; this
provides metrics such as mean, min, max, range, and standard
deviation.
Is there a way to extract information such as the *mode*, or
information to create a histogram for each of the particular regions?

Thank you,
Yash

---

Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer