I thought I'd share the changes I needed in order to build from the current stable5 source in the repo. I have a Raring Ubuntu distribution, and I tried to install all the necessary libraries. (Independent of building, I still see https://bugzilla.redhat.com/show_bug.cgi?id=905638 in chklc.c of stable5, but I've also commented that out in order to proceed.)
Needed updates (diffs below):
- Pulled missing unwarpGradientNonlinearity.{h,c} files from somewhere in Google's cache - Updates to configure.in: Bypass gcc 4.4 decision so that libtool is used correctly (Raring has uses 4.7) Correct the MNI libraries link order Change GL include directory Do not create glut Makfile/library (use glut from system) - Update several Makefile.am files to use glut from system - Configure options that I used: --disable-Werror --with-mni-dir=/usr --with-vxl-dir=/usr --with-tcl-include=/usr --with-gl-dir=/usr --x-libraries=/usr/lib/X11 --x-includes=/usr/include/X11
? include/unwarpGradientNonlinearity.h ? utils/unwarpGradientNonlinearity.c Index: configure.in =================================================================== RCS file: /usr/fscvsroot/dev/configure.in,v retrieving revision 1.519.2.39 diff -b -r1.519.2.39 configure.in 203,210c203,210 < ac_have_gcc_44="no" < if test "${CC}" = "gcc"; then < gcc --version | head -n 1 | awk '{print $2 $3}' | grep "(GCC)4.4." >& /dev/null < if test "$?" = "0"; then < AC_MSG_NOTICE(Have gcc 4.4) < ac_have_gcc_44="yes" < fi < fi ---
ac_have_gcc_44="yes" # if test "${CC}" = "gcc"; then # gcc --version | head -n 1 | awk '{print $2 $3}' | grep "(GCC)4.4." >&
/dev/null
# if test "$?" = "0"; then # AC_MSG_NOTICE(Have gcc 4.4) # ac_have_gcc_44="yes" # fi #fi
1229c1229 < LIBS_MNI="-lnetcdf -lhdf5 -lvolume_io2 -lminc2" ---
LIBS_MNI="-lvolume_io2 -lminc2 -lnetcdf -lhdf5"
2748c2748 < [ ac_gl_includes="$withval"/include ---
[ ac_gl_includes="$withval"/include/GL
3472d3471 < glut/Makefile Index: fsgdf/fsgdf_wrap.c =================================================================== RCS file: /usr/fscvsroot/dev/fsgdf/fsgdf_wrap.c,v retrieving revision 1.18 diff -b -r1.18 fsgdf_wrap.c 110c110 < #include <tcl.h> ---
#include <tcl8.5/tcl.h>
Index: Makefile.am =================================================================== RCS file: /usr/fscvsroot/dev/Makefile.am,v retrieving revision 1.224.2.13 diff -b -r1.224.2.13 Makefile.am 13d12 < glut \ Index: mri_probedicom/Makefile.am =================================================================== RCS file: /usr/fscvsroot/dev/mri_probedicom/Makefile.am,v retrieving revision 1.7 diff -b -r1.7 Makefile.am 5c5 < AM_CFLAGS=-I$(top_srcdir)/glut $(GL_CFLAGS) \ ---
AM_CFLAGS=$(GL_CFLAGS) \
14c14 < $(X_LIBS) $(LIBS_OPENGL) $(top_builddir)/glut/libglut.a ---
$(X_LIBS) $(LIBS_OPENGL) -lglut
Index: mris2rgb/Makefile.am =================================================================== RCS file: /usr/fscvsroot/dev/mris2rgb/Makefile.am,v retrieving revision 1.8 diff -b -r1.8 Makefile.am 14d13 < -I$(top_srcdir)/glut \ 26,27c25 < $(LIBS_OPENGL) -lGL $(LIBTIFF) \ < $(top_builddir)/glut/libglut.a ---
$(LIBS_OPENGL) -lGL -lX11 $(LIBTIFF) -lglut
Index: mris_show/Makefile.am =================================================================== RCS file: /usr/fscvsroot/dev/mris_show/Makefile.am,v retrieving revision 1.7 diff -b -r1.7 Makefile.am 6d5 < -I$(top_srcdir)/glut \ 15c14 < $(LIBS_OPENGL) $(top_builddir)/glut/libglut.a ---
$(LIBS_OPENGL) -lglut
Index: nmovie/Makefile.am =================================================================== RCS file: /usr/fscvsroot/dev/nmovie/Makefile.am,v retrieving revision 1.11.4.3 diff -b -r1.11.4.3 Makefile.am 10,11c10 < -I$(top_srcdir)/unix \ < -I$(top_srcdir)/glut ---
-I$(top_srcdir)/unix
16,17c15 < -I$(top_srcdir)/unix \ < -I$(top_srcdir)/glut ---
-I$(top_srcdir)/unix
27c25 < $(top_builddir)/glut/libglut.a ---
-lglut
31c29 < $(top_builddir)/glut/libglut.a ---
-lglut
Index: stim_polar/Makefile.am =================================================================== RCS file: /usr/fscvsroot/dev/stim_polar/Makefile.am,v retrieving revision 1.9 diff -b -r1.9 Makefile.am 7c7 < -I$(top_srcdir)/glut $(GL_CFLAGS) ---
$(GL_CFLAGS)
14c14 < $(X_LIBS) $(LIBS_OPENGL) $(top_builddir)/glut/libglut.a ---
$(X_LIBS) $(LIBS_OPENGL) -lglut