Dear Buche,
Thank you very much for your quick reply.
Do you mean those lines: (from recon-all. log) ================== . . . gca peak = 0.27536 (62) mri peak = 0.11940 (97) Right_Hippocampus (53): linear fit = 1.55 x + 0.0 (325 voxels, overlap=0. 000) Right_Hippocampus (53): linear fit = 1.55 x + 0.0 (325 voxels, peak = 96), gca=96.1 . .
===================
If this is what you meant, can you shed some light on this log. What "gcapeak" / " mri peak" means? And what the number insight the parentheses represent ?
Thanks in advance, Assaf
On Tue, Jun 25, 2013 at 9:49 PM, Bruce Fischl fischl@nmr.mgh.harvard.eduwrote:
Hi Dov
I think it writes out the log posterior at each iteration of the aseg (mri_ca_label)
cheers Bruce
On Tue, 25 Jun 2013, Dov Sadan wrote:
Hi there,
I'm wondering if there's any parameter which can assess the correctness of the freesurfer's segmentation **( the aparc.a2009s+aseg.mgz **file).
--> Assuming the freesurfer's algorithm fitting/minimizing an objective function, right ? If so, where I can find the value of this fitted function ? (or RMS value ?)
Thanks in advance, Dov
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