Pablo This Dicom you attached comes from a Philips scanner. We had a bug in 3 Philips scanners with their DICOM files not being compliant with DICOM standard.
In your header there's "DICOM 4.0 MR datadefs" - that's the problem with Philips: Dicom current standard is 3.
Take a look of this thread: http://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg08397.html http://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg08397.html ----------------------------------------------------------- Pedro Paulo de M. Oliveira Junior Diretor de Operações Netfilter & SpeedComm Telecom --- Novo Netfilter 3.0 www.Netfilter.com.br --- Em breve Netfilter Small Business
2009/7/17 Jose Luis Cantero Lorente jlcanlor@upo.es
Hi,
I am trying to convert from dicom to mgz (or nii) in Freesurfer by using dicom files as the one attached to this message. However, Freesurfer reports that this file is not a dicom. It seems weird to me since it can be opened with MRIcro, SPM as dicom, but not with Freesurfer. Could anyone tell me if there is another Freesurfer command to covert these dicoms to mgz from the command line?
Thanks in advance.
Best, Jose
Jose Luis Cantero, Ph.D. Laboratory of Functional Neuroscience Department of Physiology, Anatomy, and Cell Biology University Pablo de Olavide Ctra. de Utrera, Km.1 41013 - Sevilla
- Spain -
Phone: +34 954 977433 Fax: +34 954 349151 Email: jlcanlor@upo.es http://www.upo.es/neuroaging/en/
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