Hi Eli
sure, you can use mri_extract_label and specify the output volume as .nii (or .nii.gz)
cheers Bruce On Mon, 5 Oct 2015, Rockers, Elijah D. wrote:
Hello,
We are interested in finding a way to use particular parcellations from Freesurfer in a separate program. For instance, we are very happy with the way Freesurfer parcellates the Choroid Plexus and separates the Cerebellum into white and gray matter regions, and would like to import these regions into another program for analysis. This other program (PMOD) can import .nii files as templates. We have been so far unsuccessful at importing the regions, but believe it should be possible.
Is there some way to achieve this?
Thanks,
Eli
Houston Methodist. Leading Medicine.
Ranked by U.S.News & World Report as one of America's "Best Hospitals" in 11 specialties. Named to FORTUNE® Magazine's "100 Best Companies to Work For®" list 10 years in a row. Designated as a Magnet hospital for excellence in nursing. Visit us at houstonmethodist.org. Follow us at twitter.com/MethodistHosp and www.facebook.com/HoustonMethodist.
***CONFIDENTIALITY NOTICE*** This e-mail is the property of Houston Methodist Hospital and/or its relevant affiliates and may contain restricted and privileged material for the sole use of the intended recipient(s). Any review, use, distribution or disclosure by others is strictly prohibited. If you are not the intended recipient (or authorized to receive for the recipient), please contact the sender and delete all copies of the message. Thank you.
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer