Hi Douglas,
How exactly should I upload the glmdir?
Kind regards,
Bronwyn Overs Research Assistant
Neuroscience Research Australia
Neuroscience Research Australia Margarete Ainsworth Building Barker Street Randwick Sydney NSW 2031 Australia *M* 0411 308 769 *T* +61 2 9399 1883 *F* +61 2 9399 1265
neura.edu.au http://neura.edu.au
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On 11/11/2014 4:19 am, Douglas N Greve wrote:
Can you upload the gtlmdir and I'll take a look?
On 11/06/2014 08:19 PM, Bronwyn Overs wrote:
I believe it is the cluster-forming threshold. I was running the following: mri_glmfit-sim --glmdir site-gender-group-prothaplotype.glmdir --cache 1.3 abs --cwpvalthresh 0.05 --2spaces mri_glmfit-sim --glmdir site-gender-group-prothaplotype.glmdir --cache 2 abs --cwpvalthresh 0.05 --2spaces
Kind regards,
Bronwyn Overs Research Assistant
Neuroscience Research Australia
Neuroscience Research Australia Margarete Ainsworth Building Barker Street Randwick Sydney NSW 2031 Australia *M* 0411 308 769 *T* +61 2 9399 1883 *F* +61 2 9399 1265
neura.edu.au http://neura.edu.au
Follow @neuraustralia on twitter https://twitter.com/neuraustraliaFollow NeuRA on facebook https://www.facebook.com/NeuroscienceResearchAustraliaSubscribe to the NeuRA Magazine http://www.neura.edu.au/help-research/subscribe
On 7/11/2014 4:03 am, Douglas N Greve wrote:
Do you mean cluster-wise threshold or cluster-forming threshold?
On 11/06/2014 01:12 AM, Bronwyn Overs wrote:
Dear Freesurfer Mailing list,
While running a glm anlaysis with monte carlo correction (using cluster wise thresholds of .05 & .01), I encountered the following issue: When examining the clusters formed for each of the different cluster wise thresholds, the .05 threshold resulted in a superior temporal cluster, while the .01 threshold resulted in a two lateral occipital clusters that did not overlap with the cluster from the .05 threshold.
Do you know why there would be no overlap between significant regions at different cluster wise thresholds? I was aware that a cluster which is significant at .05 may split or be smaller at .01, but I do not know why entirely different regions would be significant. --
Kind regards,
Bronwyn Overs Research Assistant
Neuroscience Research Australia
Neuroscience Research Australia Margarete Ainsworth Building Barker Street Randwick Sydney NSW 2031 Australia *M* 0411 308 769 *T* +61 2 9399 1883 *F* +61 2 9399 1265
neura.edu.auhttp://neura.edu.au
Follow @neuraustralia on twitter https://twitter.com/neuraustraliaFollow NeuRA on facebook https://www.facebook.com/NeuroscienceResearchAustraliaSubscribe to the NeuRA Magazinehttp://www.neura.edu.au/help-research/subscribe
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