Narly,
v3.0 uses the aparc.a2005s atlas.
to use the a2002s atlas in v3.0, edit the recon-all script and replace instances of '2005' with '2002', which only appear in the cortparc2 stage. i havent tried this, so i dont know if the atlas will work though.
Nick
On Tue, 2009-10-20 at 18:03 +0100, Narly A Golestani wrote:
Hello all,
Thanks Chistophe for your answers.
I have not heard back regading some of the other points.
I would like to know:
- The fs release in which ?h.aparc.a2005s.annot replaced
?h.aparc.a2002s.annot. I assume it was before 2007 (I used version 3.0.5 in 2007).
2a) *** If it is possible to use the 2002 Destrieux atlas with either the present or with older (say version 3.0.5) versions of freesurfer? ****
Christophe seems to think that there was an important change in the reconstruction process in 2005 that obliged you to relabel the subjects used in the database.
2b) If this is possible, how can I go about it? I guess somewhere in the recon-all -all command I will need to specificy to use the 2002 and not the default atlas for that version (ie; the a2005 atlas for version 3.0.5).
- Rahul: how does the Desikan parcellation define the transverse
temporal gyrus (ie; does it include multiple transverse gyri or only the most anterior one in the case of duplication)? And has this definition changed between freesurfer versions 3.0.5 and 4.4? I have looked at the Desikan 2006 Neuroimage paper (desikan06-parcellation.pdf) but it does not specify exactly how the posterior boundary of the transverse gyrus was defined.
thanks in advance, best wishes, Narly. _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer