Dear Dr Bruce, Thank you very much for your response. I tried mri_Convert -i INPUT_FIRST_DICOM -it dicom -ot nii -o OUTPUT_4d.nii The problem is when I run mri_info on the "OUTPUT_4d.nii" I get the following voxel-to-ras determinant 0 ras to voxel transform: mat =NULL! MatrixFree: NULL mat POINTER! I am not sure what I am doing wrong. So thank you for help Jon
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-------- Original Message -------- Subject: Re: [Freesurfer] mri_convert Local Time: July 19, 2017 5:12 PM UTC Time: July 19, 2017 9:12 PM From: fischl@nmr.mgh.harvard.edu To: John Anderson John.anderso@protonmail.com, Freesurfer support list freesurfer@nmr.mgh.harvard.edu Hi Jon have you tried mri_convert? cheers Bruce On Wed, 19 Jul 2017, John Anderson wrote:
Dear Freesurfer, Are there any tools in Freesurfer that can help to convert PET DICOMs to nifti files?
Thank you for your help and for any suggestion Jon
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