Hi Freesurfer users.
I am currently performing the steps of Functional Connectivity Walkthrough. And after resolving the problems in the first steps, specially in the preprocessing command (missing AFNI files), I'm now stuck in the 5th step: Creating the FC seeds for each subject.
In the 4th step I've created the parameters for a region of interest. In this case, cheking the FreeSurferColorLUT.txt, I run this command to create the parameters for Left CA1 of Hippocampus (after the reconstruction, I performed the hippocampal subfields):
fcseed-config -segid 552 -fcname L_CA1.dat -fsd rest -mean -cfg
mean.L_CA1.config
In the 5th step, when I run the fcseed-sess command, I obtain this error and I'm unable to figure out why:
fcseed-sess -s con_algon -cfg L_CA1.config
ERROR: could not determine file for
/Users/acad1215inv/Desktop/ALBERTO/08_Conectividad/CONECTIVIDAD/02_resting/con_algon/rest/009/fmcpr stem2fname /Users/acad1215inv/Desktop/ALBERTO/08_Conectividad/CONECTIVIDAD/02_resting/con_algon/rest/009/fmcpr
I've checked the "009" folder and there isn't any file with the name "fmcpr".
Does someone have any idea how could I resolve this?
Thanks!