Re: [Freesurfer] Command Not Found

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Oh thank you, good catch! I am now encountering the issue below:

developer@developer-VirtualBox:~$ tkregister2 --s home --mov updated.mgz --regheader --reg register.dat --surf orig tkregister_tcl /usr/local/freesurfer/7.2.0/tktools/tkregister2.tcl surfname set to orig INFO: no target volume specified, assuming FreeSurfer orig volume. target volume orig movable volume updated.mgz reg file register.dat LoadVol 1 ZeroCRAS 0 $Id: tkregister2.c,v 1.132.2.1 2016/08/02 21:17:29 greve Exp $ Diagnostic Level -1 ERROR: could not find orig as either mgz or COR /usr/local/freesurfer/7.2.0/subjects/home/mri/orig

Could this be another typo on my part or should I be using a different path?

Thanks again! Rachel

From: Wighton, Paulmailto:PWIGHTON@mgh.harvard.edu Sent: June 28, 2022 4:36 PM To: freesurfer@nmr.mgh.harvard.edumailto:Freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Command Not Found

You don't often get email from pwighton@mgh.harvard.edu. Learn why this is importanthttps://secure-web.cisco.com/1jnAu9rZyQoAsHaEXFKNaea_IoqrfNDjTa3fixAdF7c_WZaD8XRsCcN6osTq_CGAreLqRbDx4eZa528eU0R3IlrFdtRmTEhiPM8eWkmKpBzPHCx1MumoGqEPNTLyt9qCEX94kwQgCS6Z1wxx39C4ZoiSu5bP_hiAtdY08XFyA7iBmFcLayc4X_QskxFXP1snp4NASkLp3rXE3mKToDppINnv2nDnG52e091xf29pjQzW46h5-LXZkym2URm3ZRkr2DrY2ksZjAZM2GuLmSn8fm5OrlvNIikiwIUVqjuL-WxawQ6oQRmlHHFoOc50GXYK0/https%3A%2F%2Faka.ms%2FLearnAboutSenderIdentification Hi Rachel,

Are you trying to run tkregister2? Looks like you forgot the t at the start of the command.

-Paul

From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Rachel Wagner rwagne2@uwo.ca Sent: Tuesday, June 28, 2022 4:29 PM To: freesurfer@nmr.mgh.harvard.edu Freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] Command Not Found

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Hello,

Thank you for your help! I am trying to register my spm image and am getting the following error:

developer@developer-VirtualBox:~$ kregister2 --s home --mov updated.mgz --regheader --reg register.dat --surf orig

kregister2: command not found

Is my path not set correctly?

Thanks again,

Rachel Wagner