19 Mar
2019
19 Mar
'19
12:07 p.m.
how about the destrieux atlas?
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2937159/
On 3/19/19 11:00 AM, Vasile, Eduard wrote:
Dear Freesurfer team,
I was wondering if you are aware of an extensive label for insula parcellation (LH and RH), something more advanced then the DK atlas. I've been struggling to find one.
Thank you!
Kind regards Eduard Vasile
On 3/18/19, 12:01 PM, "freesurfer-bounces@nmr.mgh.harvard.edu on behalf of freesurfer-request@nmr.mgh.harvard.edu" <freesurfer-bounces@nmr.mgh.harvard.edu on behalf of freesurfer-request@nmr.mgh.harvard.edu> wrote:
Send Freesurfer mailing list submissions to freesurfer@nmr.mgh.harvard.edu To subscribe or unsubscribe via the World Wide Web, visit https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer or, via email, send a message with subject or body 'help' to freesurfer-request@nmr.mgh.harvard.edu You can reach the person managing the list at freesurfer-owner@nmr.mgh.harvard.edu When replying, please edit your Subject line so it is more specific than "Re: Contents of Freesurfer digest..." Today's Topics: 1. mris_preproc not running (Sims, Sara A (Campus)) 2. Longitudinal QDEC (AKUDJEDU, THEOPHILUS) 3. Re: mris_preproc not running (Greve, Douglas N.,Ph.D.) 4. Re: Longitudinal QDEC (Greve, Douglas N.,Ph.D.) 5. Re: Cortical thickness values extraction issue (Giuliana Klencklen) 6. Re: Cortical thickness values extraction issue (Greve, Douglas N.,Ph.D.) 7. Re: Cortical thickness values extraction issue (Giuliana Klencklen) 8. skip subjects already processed (Akshay Patel) 9. tkregister-sess (Nasiriavanaki, Zahra) ---------------------------------------------------------------------- Message: 1 Date: Mon, 18 Mar 2019 15:12:39 +0000 From: "Sims, Sara A (Campus)" <snolin@uab.edu> Subject: [Freesurfer] mris_preproc not running To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu> Message-ID: <24C66DC0-853A-4C52-943B-0AB3E731FA7C@uab.edu> Content-Type: text/plain; charset="utf-8" External Email - Use Caution Hello! I have 786 subjects that I am trying to do a paired difference analysis using mri_glm. I am getting stuck at the mris_preproc stage. I have tried running it on a handful of subjects and it works wonderfully. However, when I run it on all the subjects it outputs an empty file. I think part of my problem is that I am having to do 1572 flags to enter all the subjects files (which I made a script to create, I did not hand type them). Is there a better way to do this? Do I just have too many subjects? This is what I have that isn?t working: mris_preproc --target fsaverage --hemi lh --isp $in/${network}/100206.${run1}/lhsurf.mgh --isp $in/${network}/100206.${run2}/lhsurf.mgh --isp $in/${network}/100307.${run1}/lhsurf.mgh --isp $in/${network}/100307.${run2}/lhsurf.mgh ??. --out $out/preproc_${network}_${pair}/lh.paired-diff.${network}_${pair}.mgh --f $sublist --paired-diff --no-cortex-only Thanks for the help! Sara Sims