Hello list,
I'm trying to get aparc surface area from the pial surface in a table using aparcstats2table but I'm not being able to...
I've already created the file aparc_pial.stats inside the stats dir running the following command line from the subjects's label dir:
mris_anatomical_stats -mgz -f ../stats/rh.aparcpial -b -a ./rh.aparc.annot -c ./aparc.ctab subjectname rh pial
And if I open the aparc_pial.stats file the surfaces are bigger then in aparc (white matter).
But when I try to get the table using:
aparcstats2table --hemi rh --subjects subjectname --parc aparc_pial --meas area -t rh_aparc_surface_pial.txt
I get the message:
Number of subjects : 1 Building the table.. ERROR: cannot find /home/user/visao/Freesurfer/subjectname/stats/rh.aparc_pial.stats Use --skip flag if you want to continue in such cases
What's wrong?
Thank you, Andreia