Ok, thanks for the reply. It sounds like the ENIGMA folks need to updage their commands to use freeview. I'll try using ImageMajick's import as a workaround.
Jen
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Message: 11 Date: Thu, 12 Apr 2018 10:59:58 -0400 From: "Douglas N. Greve" dgreve@mgh.harvard.edu Subject: Re: [Freesurfer] tksurkfer save error To: freesurfer@nmr.mgh.harvard.edu, Ruopeng Wang rpwang@nmr.mgh.harvard.edu Message-ID: 834b362c-841b-5e86-cd3e-74b34ec33b76@mgh.harvard.edu Content-Type: text/plain; charset="utf-8"; format=flowed
We are not really supporting tksurfer anymore. You can use freeview to save a png from the GUI. Ruopeng, is there a way to take a snap shot from the command line?
On 04/12/2018 10:29 AM, Evans, Jennifer (NIH/NIMH) [F] wrote:
Hi,
This is a repost as I didn?t get a reply to the one I sent a few weeks ago.? This error basically means I can?t automatically generate a webpage of all of the segmentation results.? I getting an error when trying to save a tiff file using tksurfer on a linux machine via NoMachine v5.0.47.? I?m running the ENIGMA QA pipeline which has a call similar to: ?tkfsurfer bert lh inflated.? Then, trying to save the tiff either from the GUI or using their script doesn?t work and causes the error: pixel read error/resource temporarily unavailable. ??Is there a way to get this to work or is this a feature of using a virtual desktop?
Thanks,
Jen