Just run recon-all -s subject -segstats and the new ICV should appear in the aseg.stats file
On 11/13/2018 12:08 PM, Gamaliz wrote:
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I have a fewT1 scans that have obvious incorrect registration to mni_average_305. I opened tkregister2 --s subjid --fstal --surfs and I am able to fix the registration, but I wonder how to use the ew registration to recalculate the new ICV. I am interested in doing it with Freesurfer (as I know I could get the matrix and calculate the determinant. I guess I will have to save the transform and rerun some of Freesurfer command to overwrite the old icv value?
Thanks
Gabriel
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