Hi Derin,
I guess it depends on your surfaces. Sometimes, with the cerebellum missing, they aren't accurate especially in some posterior and inferior regions. If they are fine then you probably only need to rerun the aseg (recon-all -subcortseg -s <subjid>). If the surfaces need to be fixed then you will have to do all of autorecon2 and autorecon3.
Jenni
On Wed, 7 Mar 2007, Derin Cobia wrote:
I noticed that one of our subjects made it through the processing stream (successfully) with the cerebellum missing, thus creating a bad aseg.mgz. I filled it back in, and was wondering if I needed to reprocess it completely under autorecon2 and 3 again, or just run -aseg and whatever else it needed. Thanks.
-Derin _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer